Gcaud1262.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1262.t1
Unique NameGcaud1262.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4528_length_2198_cov_5.187470contigNODE_4528_length_2198_cov_5.187470:1404..2014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7460.GB53737-PA
PFAMsSCAN,zf-AD,zf-C2H2,zf-C2H2_2,zf-C2H2_4,zf-C2H2_6,zf-met
Max annot lvl33208|Metazoa
KEGG koko:K09228,ko:K09229
Evalue0.000809
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,38BZ9@33154|Opisthokonta,3BA9A@33208|Metazoa,3CT35@33213|Bilateria,41WW3@6656|Arthropoda,3SJ74@50557|Insecta,46EE1@7399|Hymenoptera
DescriptionZinc-finger associated domain (zf-AD)
COG categoryS
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1262Gcaud1262Gracilaria caudata M_176_S67 malegeneNODE_4528_length_2198_cov_5.187470 1404..2014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1262.t1Gcaud1262.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4528_length_2198_cov_5.187470 1404..2014 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1262.t1.stop1Gcaud1262.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4528_length_2198_cov_5.187470 1404..1406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1262.t1.CDS1Gcaud1262.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4528_length_2198_cov_5.187470 1404..1756 -
Gcaud1262.t1.CDS2Gcaud1262.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_4528_length_2198_cov_5.187470 1836..1852 -
Gcaud1262.t1.CDS3Gcaud1262.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_4528_length_2198_cov_5.187470 1947..2014 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1262.t1.exon1Gcaud1262.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4528_length_2198_cov_5.187470 1404..1756 -
Gcaud1262.t1.exon2Gcaud1262.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_4528_length_2198_cov_5.187470 1836..1852 -
Gcaud1262.t1.exon3Gcaud1262.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_4528_length_2198_cov_5.187470 1947..2014 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1262.t1.intron1Gcaud1262.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_4528_length_2198_cov_5.187470 1757..1835 -
Gcaud1262.t1.intron2Gcaud1262.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_4528_length_2198_cov_5.187470 1853..1946 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1262.t1.start1Gcaud1262.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4528_length_2198_cov_5.187470 2012..2014 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1262.t1 ID=Gcaud1262.t1|Name=Gcaud1262.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=146bp
MSNQAYTRKPITLKECPEPSCLRKLAGEAALSRHLNQEHGGRTRSDRKFK
CSSCGFGFLSKGSLKDHHDKVHSVGNTRSKIQVAQKPERKPILPNPSTER
GSSAGPSNQTSSKQKPNVKRDPIKKEPAKSRRVKKEAVEEGIARP*
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spliced messenger RNA

>Gcaud1262.t1 ID=Gcaud1262.t1|Name=Gcaud1262.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_4528_length_2198_cov_5.187470:1404..2014- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAATCAAGCTTATACTCGTAAACCTATAACGTTGAAGGAATGTCC
AGAACCTTCTTGCCTACGAAAACTTGCAGGTGAAGCTGCGTTGAGTAGGC
ACCTAAATCAAGAACATGGTGGACGAACTAGAAGTGATCGAAAGTTTAAA
TGCAGTTCTTGTGGCTTCGGTTTTTTGTCTAAAGGGAGTCTAAAAGATCA
TCATGATAAAGTGCACAGTGTTGGGAACACAAGGTCTAAAATTCAAGTTG
CTCAAAAGCCGGAACGTAAACCAATACTTCCAAATCCCTCTACCGAAAGA
GGATCAAGCGCGGGGCCGTCTAACCAGACATCATCAAAACAGAAACCTAA
TGTTAAACGTGACCCGATCAAGAAAGAGCCGGCAAAGTCAAGGCGAGTGA
AAAAAGAAGCTGTTGAAGAGGGAATTGCAAGGCCGTAG
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protein sequence of Gcaud1262.t1

>Gcaud1262.t1 ID=Gcaud1262.t1|Name=Gcaud1262.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MSNQAYTRKPITLKECPEPSCLRKLAGEAALSRHLNQEHGGRTRSDRKFK
CSSCGFGFLSKGSLKDHHDKVHSVGNTRSKIQVAQKPERKPILPNPSTER
GSSAGPSNQTSSKQKPNVKRDPIKKEPAKSRRVKKEAVEEGIARP*
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mRNA from alignment at NODE_4528_length_2198_cov_5.187470:1404..2014-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1262.t1 ID=Gcaud1262.t1|Name=Gcaud1262.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=611bp|location=Sequence derived from alignment at NODE_4528_length_2198_cov_5.187470:1404..2014- (Gracilaria caudata M_176_S67 male)
ATGTCCAATCAAGCTTATACTCGTAAACCTATAACGTTGAAGGAATGTCC
AGAACCTTCTTGCCTACGGTGCGTTAGTCACTTAAGTGAGAAGAACTTCT
CATATCAACGTGGCTTTCAACCAACATGTTCTGAGTCATTTATTGTGAAT
AACGTGTCACAGAAAACTTGCAGGTGAAGGTATGTCACTACGAGCAGCTT
CTGCGTCGCTGCGAGTACATGCTTGATTGTTGTCTAACTCGTACTTGTGA
TATACTAGCTGCGTTGAGTAGGCACCTAAATCAAGAACATGGTGGACGAA
CTAGAAGTGATCGAAAGTTTAAATGCAGTTCTTGTGGCTTCGGTTTTTTG
TCTAAAGGGAGTCTAAAAGATCATCATGATAAAGTGCACAGTGTTGGGAA
CACAAGGTCTAAAATTCAAGTTGCTCAAAAGCCGGAACGTAAACCAATAC
TTCCAAATCCCTCTACCGAAAGAGGATCAAGCGCGGGGCCGTCTAACCAG
ACATCATCAAAACAGAAACCTAATGTTAAACGTGACCCGATCAAGAAAGA
GCCGGCAAAGTCAAGGCGAGTGAAAAAAGAAGCTGTTGAAGAGGGAATTG
CAAGGCCGTAG
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Coding sequence (CDS) from alignment at NODE_4528_length_2198_cov_5.187470:1404..2014-

>Gcaud1262.t1 ID=Gcaud1262.t1|Name=Gcaud1262.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=438bp|location=Sequence derived from alignment at NODE_4528_length_2198_cov_5.187470:1404..2014- (Gracilaria caudata M_176_S67 male)
ATGTCCAATCAAGCTTATACTCGTAAACCTATAACGTTGAAGGAATGTCC
AGAACCTTCTTGCCTACGAAAACTTGCAGGTGAAGCTGCGTTGAGTAGGC
ACCTAAATCAAGAACATGGTGGACGAACTAGAAGTGATCGAAAGTTTAAA
TGCAGTTCTTGTGGCTTCGGTTTTTTGTCTAAAGGGAGTCTAAAAGATCA
TCATGATAAAGTGCACAGTGTTGGGAACACAAGGTCTAAAATTCAAGTTG
CTCAAAAGCCGGAACGTAAACCAATACTTCCAAATCCCTCTACCGAAAGA
GGATCAAGCGCGGGGCCGTCTAACCAGACATCATCAAAACAGAAACCTAA
TGTTAAACGTGACCCGATCAAGAAAGAGCCGGCAAAGTCAAGGCGAGTGA
AAAAAGAAGCTGTTGAAGAGGGAATTGCAAGGCCGTAG
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