Gcaud1258.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1258.t1
Unique Name	Gcaud1258.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1521_length_9981_cov_5.046411	contig	NODE_1521_length_9981_cov_5.046411:570..1538 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_000362-tr
PFAMs	CUB,EGF,Fz,Ldl_recept_a,Lectin_C,Trypsin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K01316,ko:K01317,ko:K09614,ko:K09640
Evalue	9.82e-16
EggNOG OGs	COG5640@1\|root,KOG3509@1\|root,KOG3714@1\|root,KOG4297@1\|root,KOG3509@2759\|Eukaryota,KOG3627@2759\|Eukaryota,KOG3714@2759\|Eukaryota,KOG4297@2759\|Eukaryota,38CGF@33154\|Opisthokonta,3BGUI@33208\|Metazoa,3CRKT@33213\|Bilateria
EC	3.4.21.10,3.4.21.9
Description	serine-type endopeptidase activity
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1258	Gcaud1258	Gracilaria caudata M_176_S67 male	gene	NODE_1521_length_9981_cov_5.046411 570..1538 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1258.t1.start1	Gcaud1258.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1521_length_9981_cov_5.046411 570..572 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1258.t1.CDS1	Gcaud1258.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1521_length_9981_cov_5.046411 570..1538 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1258.t1.exon1	Gcaud1258.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1521_length_9981_cov_5.046411 570..1538 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1258.t1.stop1	Gcaud1258.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1521_length_9981_cov_5.046411 1536..1538 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1258.t1	Gcaud1258.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1521_length_9981_cov_5.046411 570..1538 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1521_length_9981_cov_5.046411:570..1538+
coding sequence from alignment at NODE_1521_length_9981_cov_5.046411:570..1538+

mRNA sequence

>Gcaud1258.t1 ID=Gcaud1258.t1|Name=Gcaud1258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=323bp
MTAAHCLVTPQWSIDLAAPSVNGSHSHGRIESVYKHPNFTGINADPFDFA
LLRIMPPPWEPLDVPFVRLNAASWLAVEGAFVRVSGYGIFGWNASNDPSQ
ARKPIVGELHFVDIPIHRFSPCNNSYSQLDFPKIEPLLPELQVCAGYVRN
GCNQCSGDSGGPLLQYDRLGRAVQVAIATATFRCVRPRFPGIYVRVSAAL
GWFRRVRAVFETAEPEQVFRKRGTEQEAATSPVASDSPGVETPALETPAF
ATPVSETPASETPVSTPPALATAAVANPALDKPALETPALDSPASGVAVD
GLVGVNEGDGGGRLPIFIVLTA*

spliced messenger RNA

>Gcaud1258.t1 ID=Gcaud1258.t1|Name=Gcaud1258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_1521_length_9981_cov_5.046411:570..1538+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCGCACACTGTCTCGTCACCCCACAGTGGAGTATCGACCTGGC
CGCGCCCTCCGTAAATGGCAGTCACTCACACGGGCGTATCGAAAGCGTGT
ACAAGCATCCCAACTTCACGGGAATTAACGCAGATCCCTTCGATTTTGCG
CTGCTGCGCATTATGCCGCCGCCTTGGGAACCTCTTGACGTGCCCTTCGT
GCGGCTCAATGCCGCCTCGTGGCTAGCCGTTGAGGGCGCGTTCGTTCGCG
TGTCTGGGTACGGTATTTTCGGCTGGAATGCTTCCAACGATCCCTCGCAA
GCGAGAAAACCCATTGTCGGGGAGTTGCATTTCGTGGACATTCCCATCCA
TCGCTTTTCGCCCTGTAACAACTCCTACTCTCAACTCGACTTTCCAAAAA
TTGAACCGCTGCTGCCAGAATTACAAGTGTGTGCTGGTTACGTGCGCAAT
GGTTGCAATCAATGCAGCGGAGATTCTGGTGGTCCCCTCCTGCAATACGA
TAGGCTCGGACGTGCCGTGCAGGTAGCCATCGCTACAGCAACATTCAGAT
GCGTGCGTCCTCGATTTCCGGGAATTTACGTGCGCGTTTCTGCTGCTTTG
GGCTGGTTCCGAAGAGTCCGCGCGGTTTTCGAGACGGCTGAGCCGGAGCA
GGTGTTCCGAAAGCGCGGCACGGAGCAGGAAGCGGCGACTAGTCCTGTTG
CAAGTGACTCACCTGGCGTGGAAACGCCTGCTTTGGAAACACCTGCGTTT
GCAACACCTGTCTCAGAAACGCCCGCGTCGGAGACGCCTGTTTCGACACC
GCCTGCCTTAGCAACGGCTGCCGTGGCCAACCCTGCCCTAGACAAGCCTG
CCTTGGAAACTCCTGCATTAGATTCGCCTGCCTCCGGCGTCGCCGTGGAC
GGACTGGTGGGGGTTAATGAAGGCGACGGTGGTGGGCGGCTCCCCATCTT
TATCGTGTTGACTGCGTGA

protein sequence of Gcaud1258.t1

>Gcaud1258.t1 ID=Gcaud1258.t1|Name=Gcaud1258.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=323bp
MTAAHCLVTPQWSIDLAAPSVNGSHSHGRIESVYKHPNFTGINADPFDFA
LLRIMPPPWEPLDVPFVRLNAASWLAVEGAFVRVSGYGIFGWNASNDPSQ
ARKPIVGELHFVDIPIHRFSPCNNSYSQLDFPKIEPLLPELQVCAGYVRN
GCNQCSGDSGGPLLQYDRLGRAVQVAIATATFRCVRPRFPGIYVRVSAAL
GWFRRVRAVFETAEPEQVFRKRGTEQEAATSPVASDSPGVETPALETPAF
ATPVSETPASETPVSTPPALATAAVANPALDKPALETPALDSPASGVAVD
GLVGVNEGDGGGRLPIFIVLTA*

mRNA from alignment at NODE_1521_length_9981_cov_5.046411:570..1538+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1258.t1 ID=Gcaud1258.t1|Name=Gcaud1258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_1521_length_9981_cov_5.046411:570..1538+ (Gracilaria caudata M_176_S67 male)
ATGACTGCCGCACACTGTCTCGTCACCCCACAGTGGAGTATCGACCTGGC
CGCGCCCTCCGTAAATGGCAGTCACTCACACGGGCGTATCGAAAGCGTGT
ACAAGCATCCCAACTTCACGGGAATTAACGCAGATCCCTTCGATTTTGCG
CTGCTGCGCATTATGCCGCCGCCTTGGGAACCTCTTGACGTGCCCTTCGT
GCGGCTCAATGCCGCCTCGTGGCTAGCCGTTGAGGGCGCGTTCGTTCGCG
TGTCTGGGTACGGTATTTTCGGCTGGAATGCTTCCAACGATCCCTCGCAA
GCGAGAAAACCCATTGTCGGGGAGTTGCATTTCGTGGACATTCCCATCCA
TCGCTTTTCGCCCTGTAACAACTCCTACTCTCAACTCGACTTTCCAAAAA
TTGAACCGCTGCTGCCAGAATTACAAGTGTGTGCTGGTTACGTGCGCAAT
GGTTGCAATCAATGCAGCGGAGATTCTGGTGGTCCCCTCCTGCAATACGA
TAGGCTCGGACGTGCCGTGCAGGTAGCCATCGCTACAGCAACATTCAGAT
GCGTGCGTCCTCGATTTCCGGGAATTTACGTGCGCGTTTCTGCTGCTTTG
GGCTGGTTCCGAAGAGTCCGCGCGGTTTTCGAGACGGCTGAGCCGGAGCA
GGTGTTCCGAAAGCGCGGCACGGAGCAGGAAGCGGCGACTAGTCCTGTTG
CAAGTGACTCACCTGGCGTGGAAACGCCTGCTTTGGAAACACCTGCGTTT
GCAACACCTGTCTCAGAAACGCCCGCGTCGGAGACGCCTGTTTCGACACC
GCCTGCCTTAGCAACGGCTGCCGTGGCCAACCCTGCCCTAGACAAGCCTG
CCTTGGAAACTCCTGCATTAGATTCGCCTGCCTCCGGCGTCGCCGTGGAC
GGACTGGTGGGGGTTAATGAAGGCGACGGTGGTGGGCGGCTCCCCATCTT
TATCGTGTTGACTGCGTGA

Coding sequence (CDS) from alignment at NODE_1521_length_9981_cov_5.046411:570..1538+

>Gcaud1258.t1 ID=Gcaud1258.t1|Name=Gcaud1258.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=969bp|location=Sequence derived from alignment at NODE_1521_length_9981_cov_5.046411:570..1538+ (Gracilaria caudata M_176_S67 male)
ATGACTGCCGCACACTGTCTCGTCACCCCACAGTGGAGTATCGACCTGGC
CGCGCCCTCCGTAAATGGCAGTCACTCACACGGGCGTATCGAAAGCGTGT
ACAAGCATCCCAACTTCACGGGAATTAACGCAGATCCCTTCGATTTTGCG
CTGCTGCGCATTATGCCGCCGCCTTGGGAACCTCTTGACGTGCCCTTCGT
GCGGCTCAATGCCGCCTCGTGGCTAGCCGTTGAGGGCGCGTTCGTTCGCG
TGTCTGGGTACGGTATTTTCGGCTGGAATGCTTCCAACGATCCCTCGCAA
GCGAGAAAACCCATTGTCGGGGAGTTGCATTTCGTGGACATTCCCATCCA
TCGCTTTTCGCCCTGTAACAACTCCTACTCTCAACTCGACTTTCCAAAAA
TTGAACCGCTGCTGCCAGAATTACAAGTGTGTGCTGGTTACGTGCGCAAT
GGTTGCAATCAATGCAGCGGAGATTCTGGTGGTCCCCTCCTGCAATACGA
TAGGCTCGGACGTGCCGTGCAGGTAGCCATCGCTACAGCAACATTCAGAT
GCGTGCGTCCTCGATTTCCGGGAATTTACGTGCGCGTTTCTGCTGCTTTG
GGCTGGTTCCGAAGAGTCCGCGCGGTTTTCGAGACGGCTGAGCCGGAGCA
GGTGTTCCGAAAGCGCGGCACGGAGCAGGAAGCGGCGACTAGTCCTGTTG
CAAGTGACTCACCTGGCGTGGAAACGCCTGCTTTGGAAACACCTGCGTTT
GCAACACCTGTCTCAGAAACGCCCGCGTCGGAGACGCCTGTTTCGACACC
GCCTGCCTTAGCAACGGCTGCCGTGGCCAACCCTGCCCTAGACAAGCCTG
CCTTGGAAACTCCTGCATTAGATTCGCCTGCCTCCGGCGTCGCCGTGGAC
GGACTGGTGGGGGTTAATGAAGGCGACGGTGGTGGGCGGCTCCCCATCTT
TATCGTGTTGACTGCGTGA