Gcaud1255.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1255.t2
Unique Name	Gcaud1255.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	459

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_919_length_16135_cov_4.393854	contig	NODE_919_length_16135_cov_4.393854:8038..9414 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	391612.CY0110_09812
Preferred name	amgP
PFAMs	APH
Max annot lvl	2\|Bacteria
Evalue	6.7e-13
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria
Description	very-long-chain-acyl-CoA dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1255	Gcaud1255	Gracilaria caudata M_176_S67 male	gene	NODE_919_length_16135_cov_4.393854 8038..9414 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1255.t2.stop1	Gcaud1255.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_919_length_16135_cov_4.393854 8038..8040 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1255.t2.CDS1	Gcaud1255.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_919_length_16135_cov_4.393854 8038..9414 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1255.t2.exon1	Gcaud1255.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_919_length_16135_cov_4.393854 8038..9414 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1255.t2.start1	Gcaud1255.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_919_length_16135_cov_4.393854 9412..9414 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1255.t2	Gcaud1255.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_919_length_16135_cov_4.393854 8038..9414 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_919_length_16135_cov_4.393854:8038..9414-
coding sequence from alignment at NODE_919_length_16135_cov_4.393854:8038..9414-

mRNA sequence

>Gcaud1255.t2 ID=Gcaud1255.t2|Name=Gcaud1255.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp
MPTFLAIFGVGGKRIVVRSHVSDEVETIFEFDMRSLDGAYHVPSFIAAVS
RKMGIGTQMHIATDEDLADGTNIIVLELLSEDVKLQNPFSFAKWESVKHL
VETKCRVPSIGEYLVSFLEGKSLSLPGREATPWYRIGYYQHIEPRIMNAV
KHAGLIAVTKPDQLRLSSISVIYKISVKTVNSPKREETHFDVFYKVVPKG
SMEVLFTSLMCGLFPNSTGKLLYIDEEIGAFLSGDFGPNLCELGVQGIPE
RYGDRVQKLVDGAITQWAQIQRASVKHIQHLKHSGVPLYDIQWYNQGLEK
VMQYLEGKQEIMAGTTVRARRLLEKVSVLWEHAGIPYTIVHGDLHPENVS
TPRESKSVFVFYDWEDLCITHPFLDISDNQLGGAFKQNAAYCNSWEHYCR
DGSLLESIAEAADSLHWLRKAVDVMSRKYLWHEAKEERVLEYFNEFTSAI
ATIKWIDD*

spliced messenger RNA

>Gcaud1255.t2 ID=Gcaud1255.t2|Name=Gcaud1255.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at NODE_919_length_16135_cov_4.393854:8038..9414- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACCTTTTTGGCAATCTTCGGAGTGGGGGGGAAACGCATAGTTGT
ACGCTCCCACGTTTCCGATGAAGTTGAGACAATCTTTGAATTTGACATGA
GGAGTCTCGACGGTGCCTACCACGTCCCTTCTTTTATTGCGGCCGTAAGC
AGAAAGATGGGAATTGGGACCCAAATGCATATAGCCACTGACGAAGACTT
AGCGGACGGAACGAATATCATTGTTCTAGAGCTCTTAAGTGAGGACGTCA
AACTCCAAAATCCGTTTTCGTTTGCTAAGTGGGAATCTGTTAAACATCTT
GTGGAAACCAAATGCAGAGTACCGAGTATAGGAGAATACCTGGTGTCTTT
CTTGGAAGGCAAATCACTATCTTTACCTGGTCGTGAGGCAACTCCGTGGT
ACAGAATTGGATACTATCAGCATATTGAGCCGCGTATCATGAATGCTGTT
AAGCACGCAGGATTGATTGCAGTTACAAAGCCCGACCAACTCCGACTGTC
AAGCATATCGGTTATATACAAGATATCTGTGAAAACTGTCAACTCGCCTA
AAAGAGAAGAAACTCATTTTGATGTCTTTTACAAAGTGGTACCAAAAGGA
AGCATGGAAGTACTCTTCACATCTTTAATGTGTGGACTGTTTCCAAACTC
TACTGGTAAACTTTTGTACATTGACGAAGAGATCGGGGCCTTTCTAAGCG
GTGACTTTGGACCCAATCTTTGTGAATTAGGGGTTCAAGGGATACCTGAA
AGGTATGGAGACCGCGTTCAAAAGCTTGTCGATGGAGCAATAACGCAATG
GGCTCAGATACAGCGCGCTTCTGTGAAACATATACAGCATCTCAAACACT
CTGGTGTTCCGCTTTATGACATACAATGGTACAATCAAGGCCTGGAGAAG
GTAATGCAGTACTTGGAAGGAAAACAGGAGATAATGGCAGGCACTACAGT
AAGAGCAAGAAGACTGCTCGAAAAAGTCTCAGTATTGTGGGAGCACGCAG
GAATCCCGTACACCATTGTACATGGAGACTTACATCCTGAGAACGTATCC
ACACCCAGAGAAAGCAAAAGCGTTTTTGTTTTCTACGACTGGGAAGACTT
GTGCATCACACATCCTTTCTTGGATATTTCAGATAATCAGCTAGGTGGAG
CTTTCAAGCAAAATGCTGCGTATTGCAACAGCTGGGAACACTACTGTAGG
GACGGATCTTTGCTGGAAAGTATTGCAGAGGCGGCAGACTCATTACACTG
GCTTAGGAAAGCGGTGGATGTGATGAGTCGCAAGTATCTCTGGCATGAAG
CCAAAGAGGAAAGAGTCCTTGAATACTTCAACGAATTCACTTCAGCAATT
GCTACCATAAAATGGATTGATGATTAG

protein sequence of Gcaud1255.t2

>Gcaud1255.t2 ID=Gcaud1255.t2|Name=Gcaud1255.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=459bp
MPTFLAIFGVGGKRIVVRSHVSDEVETIFEFDMRSLDGAYHVPSFIAAVS
RKMGIGTQMHIATDEDLADGTNIIVLELLSEDVKLQNPFSFAKWESVKHL
VETKCRVPSIGEYLVSFLEGKSLSLPGREATPWYRIGYYQHIEPRIMNAV
KHAGLIAVTKPDQLRLSSISVIYKISVKTVNSPKREETHFDVFYKVVPKG
SMEVLFTSLMCGLFPNSTGKLLYIDEEIGAFLSGDFGPNLCELGVQGIPE
RYGDRVQKLVDGAITQWAQIQRASVKHIQHLKHSGVPLYDIQWYNQGLEK
VMQYLEGKQEIMAGTTVRARRLLEKVSVLWEHAGIPYTIVHGDLHPENVS
TPRESKSVFVFYDWEDLCITHPFLDISDNQLGGAFKQNAAYCNSWEHYCR
DGSLLESIAEAADSLHWLRKAVDVMSRKYLWHEAKEERVLEYFNEFTSAI
ATIKWIDD*

mRNA from alignment at NODE_919_length_16135_cov_4.393854:8038..9414-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1255.t2 ID=Gcaud1255.t2|Name=Gcaud1255.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at NODE_919_length_16135_cov_4.393854:8038..9414- (Gracilaria caudata M_176_S67 male)
ATGCCGACCTTTTTGGCAATCTTCGGAGTGGGGGGGAAACGCATAGTTGT
ACGCTCCCACGTTTCCGATGAAGTTGAGACAATCTTTGAATTTGACATGA
GGAGTCTCGACGGTGCCTACCACGTCCCTTCTTTTATTGCGGCCGTAAGC
AGAAAGATGGGAATTGGGACCCAAATGCATATAGCCACTGACGAAGACTT
AGCGGACGGAACGAATATCATTGTTCTAGAGCTCTTAAGTGAGGACGTCA
AACTCCAAAATCCGTTTTCGTTTGCTAAGTGGGAATCTGTTAAACATCTT
GTGGAAACCAAATGCAGAGTACCGAGTATAGGAGAATACCTGGTGTCTTT
CTTGGAAGGCAAATCACTATCTTTACCTGGTCGTGAGGCAACTCCGTGGT
ACAGAATTGGATACTATCAGCATATTGAGCCGCGTATCATGAATGCTGTT
AAGCACGCAGGATTGATTGCAGTTACAAAGCCCGACCAACTCCGACTGTC
AAGCATATCGGTTATATACAAGATATCTGTGAAAACTGTCAACTCGCCTA
AAAGAGAAGAAACTCATTTTGATGTCTTTTACAAAGTGGTACCAAAAGGA
AGCATGGAAGTACTCTTCACATCTTTAATGTGTGGACTGTTTCCAAACTC
TACTGGTAAACTTTTGTACATTGACGAAGAGATCGGGGCCTTTCTAAGCG
GTGACTTTGGACCCAATCTTTGTGAATTAGGGGTTCAAGGGATACCTGAA
AGGTATGGAGACCGCGTTCAAAAGCTTGTCGATGGAGCAATAACGCAATG
GGCTCAGATACAGCGCGCTTCTGTGAAACATATACAGCATCTCAAACACT
CTGGTGTTCCGCTTTATGACATACAATGGTACAATCAAGGCCTGGAGAAG
GTAATGCAGTACTTGGAAGGAAAACAGGAGATAATGGCAGGCACTACAGT
AAGAGCAAGAAGACTGCTCGAAAAAGTCTCAGTATTGTGGGAGCACGCAG
GAATCCCGTACACCATTGTACATGGAGACTTACATCCTGAGAACGTATCC
ACACCCAGAGAAAGCAAAAGCGTTTTTGTTTTCTACGACTGGGAAGACTT
GTGCATCACACATCCTTTCTTGGATATTTCAGATAATCAGCTAGGTGGAG
CTTTCAAGCAAAATGCTGCGTATTGCAACAGCTGGGAACACTACTGTAGG
GACGGATCTTTGCTGGAAAGTATTGCAGAGGCGGCAGACTCATTACACTG
GCTTAGGAAAGCGGTGGATGTGATGAGTCGCAAGTATCTCTGGCATGAAG
CCAAAGAGGAAAGAGTCCTTGAATACTTCAACGAATTCACTTCAGCAATT
GCTACCATAAAATGGATTGATGATTAG

Coding sequence (CDS) from alignment at NODE_919_length_16135_cov_4.393854:8038..9414-

>Gcaud1255.t2 ID=Gcaud1255.t2|Name=Gcaud1255.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1377bp|location=Sequence derived from alignment at NODE_919_length_16135_cov_4.393854:8038..9414- (Gracilaria caudata M_176_S67 male)
ATGCCGACCTTTTTGGCAATCTTCGGAGTGGGGGGGAAACGCATAGTTGT
ACGCTCCCACGTTTCCGATGAAGTTGAGACAATCTTTGAATTTGACATGA
GGAGTCTCGACGGTGCCTACCACGTCCCTTCTTTTATTGCGGCCGTAAGC
AGAAAGATGGGAATTGGGACCCAAATGCATATAGCCACTGACGAAGACTT
AGCGGACGGAACGAATATCATTGTTCTAGAGCTCTTAAGTGAGGACGTCA
AACTCCAAAATCCGTTTTCGTTTGCTAAGTGGGAATCTGTTAAACATCTT
GTGGAAACCAAATGCAGAGTACCGAGTATAGGAGAATACCTGGTGTCTTT
CTTGGAAGGCAAATCACTATCTTTACCTGGTCGTGAGGCAACTCCGTGGT
ACAGAATTGGATACTATCAGCATATTGAGCCGCGTATCATGAATGCTGTT
AAGCACGCAGGATTGATTGCAGTTACAAAGCCCGACCAACTCCGACTGTC
AAGCATATCGGTTATATACAAGATATCTGTGAAAACTGTCAACTCGCCTA
AAAGAGAAGAAACTCATTTTGATGTCTTTTACAAAGTGGTACCAAAAGGA
AGCATGGAAGTACTCTTCACATCTTTAATGTGTGGACTGTTTCCAAACTC
TACTGGTAAACTTTTGTACATTGACGAAGAGATCGGGGCCTTTCTAAGCG
GTGACTTTGGACCCAATCTTTGTGAATTAGGGGTTCAAGGGATACCTGAA
AGGTATGGAGACCGCGTTCAAAAGCTTGTCGATGGAGCAATAACGCAATG
GGCTCAGATACAGCGCGCTTCTGTGAAACATATACAGCATCTCAAACACT
CTGGTGTTCCGCTTTATGACATACAATGGTACAATCAAGGCCTGGAGAAG
GTAATGCAGTACTTGGAAGGAAAACAGGAGATAATGGCAGGCACTACAGT
AAGAGCAAGAAGACTGCTCGAAAAAGTCTCAGTATTGTGGGAGCACGCAG
GAATCCCGTACACCATTGTACATGGAGACTTACATCCTGAGAACGTATCC
ACACCCAGAGAAAGCAAAAGCGTTTTTGTTTTCTACGACTGGGAAGACTT
GTGCATCACACATCCTTTCTTGGATATTTCAGATAATCAGCTAGGTGGAG
CTTTCAAGCAAAATGCTGCGTATTGCAACAGCTGGGAACACTACTGTAGG
GACGGATCTTTGCTGGAAAGTATTGCAGAGGCGGCAGACTCATTACACTG
GCTTAGGAAAGCGGTGGATGTGATGAGTCGCAAGTATCTCTGGCATGAAG
CCAAAGAGGAAAGAGTCCTTGAATACTTCAACGAATTCACTTCAGCAATT
GCTACCATAAAATGGATTGATGATTAG