Gcaud1252.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1252.t1
Unique NameGcaud1252.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_763_length_18456_cov_4.667465contigNODE_763_length_18456_cov_4.667465:1525..2028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1252Gcaud1252Gracilaria caudata M_176_S67 malegeneNODE_763_length_18456_cov_4.667465 1525..2028 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1252.t1.stop1Gcaud1252.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_763_length_18456_cov_4.667465 1525..1527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1252.t1.CDS1Gcaud1252.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_763_length_18456_cov_4.667465 1525..2028 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1252.t1.exon1Gcaud1252.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_763_length_18456_cov_4.667465 1525..2028 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1252.t1.start1Gcaud1252.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_763_length_18456_cov_4.667465 2026..2028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1252.t1Gcaud1252.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_763_length_18456_cov_4.667465 1525..2028 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1252.t1 ID=Gcaud1252.t1|Name=Gcaud1252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=168bp
MGGEDGGDGGDGGDGGEGGDGGDGGDGGASIFTDGGAGGDGGDGGEGGAG
GEGGAGGDSLLETGGEGGDGGMGGEGGVGGAGGEGGDGDEMGGAGGDGGD
GGFGADGGSGGAGGDAEIGGDGGMGGDGGDGDAETPAGDGGLGGDGGLGE
ELDGFGGLGGAGGDDLA*
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spliced messenger RNA

>Gcaud1252.t1 ID=Gcaud1252.t1|Name=Gcaud1252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp|location=Sequence derived from alignment at NODE_763_length_18456_cov_4.667465:1525..2028- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGCGAGGATGGTGGCGACGGCGGCGACGGAGGAGATGGTGGGGA
GGGAGGTGACGGCGGTGATGGAGGAGATGGAGGAGCTTCCATCTTCACCG
ATGGTGGTGCCGGCGGTGACGGAGGAGACGGTGGTGAAGGTGGCGCCGGC
GGCGAAGGAGGCGCTGGAGGTGACTCGCTCTTGGAAACCGGAGGTGAAGG
AGGAGATGGAGGAATGGGTGGCGAGGGCGGCGTTGGAGGAGCTGGTGGCG
AAGGTGGTGACGGTGATGAGATGGGTGGAGCTGGTGGTGACGGTGGCGAC
GGTGGATTTGGCGCTGATGGAGGCAGTGGCGGGGCTGGTGGCGACGCGGA
AATCGGAGGGGATGGTGGAATGGGAGGTGATGGCGGAGATGGAGACGCGG
AGACACCGGCCGGTGATGGAGGTCTTGGCGGTGATGGCGGTTTAGGGGAA
GAGCTTGACGGATTTGGTGGTCTGGGTGGAGCTGGTGGAGACGACCTTGC
GTAA
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protein sequence of Gcaud1252.t1

>Gcaud1252.t1 ID=Gcaud1252.t1|Name=Gcaud1252.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=168bp
MGGEDGGDGGDGGDGGEGGDGGDGGDGGASIFTDGGAGGDGGDGGEGGAG
GEGGAGGDSLLETGGEGGDGGMGGEGGVGGAGGEGGDGDEMGGAGGDGGD
GGFGADGGSGGAGGDAEIGGDGGMGGDGGDGDAETPAGDGGLGGDGGLGE
ELDGFGGLGGAGGDDLA*
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mRNA from alignment at NODE_763_length_18456_cov_4.667465:1525..2028-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1252.t1 ID=Gcaud1252.t1|Name=Gcaud1252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp|location=Sequence derived from alignment at NODE_763_length_18456_cov_4.667465:1525..2028- (Gracilaria caudata M_176_S67 male)
ATGGGCGGCGAGGATGGTGGCGACGGCGGCGACGGAGGAGATGGTGGGGA
GGGAGGTGACGGCGGTGATGGAGGAGATGGAGGAGCTTCCATCTTCACCG
ATGGTGGTGCCGGCGGTGACGGAGGAGACGGTGGTGAAGGTGGCGCCGGC
GGCGAAGGAGGCGCTGGAGGTGACTCGCTCTTGGAAACCGGAGGTGAAGG
AGGAGATGGAGGAATGGGTGGCGAGGGCGGCGTTGGAGGAGCTGGTGGCG
AAGGTGGTGACGGTGATGAGATGGGTGGAGCTGGTGGTGACGGTGGCGAC
GGTGGATTTGGCGCTGATGGAGGCAGTGGCGGGGCTGGTGGCGACGCGGA
AATCGGAGGGGATGGTGGAATGGGAGGTGATGGCGGAGATGGAGACGCGG
AGACACCGGCCGGTGATGGAGGTCTTGGCGGTGATGGCGGTTTAGGGGAA
GAGCTTGACGGATTTGGTGGTCTGGGTGGAGCTGGTGGAGACGACCTTGC
GTAA
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Coding sequence (CDS) from alignment at NODE_763_length_18456_cov_4.667465:1525..2028-

>Gcaud1252.t1 ID=Gcaud1252.t1|Name=Gcaud1252.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=504bp|location=Sequence derived from alignment at NODE_763_length_18456_cov_4.667465:1525..2028- (Gracilaria caudata M_176_S67 male)
ATGGGCGGCGAGGATGGTGGCGACGGCGGCGACGGAGGAGATGGTGGGGA
GGGAGGTGACGGCGGTGATGGAGGAGATGGAGGAGCTTCCATCTTCACCG
ATGGTGGTGCCGGCGGTGACGGAGGAGACGGTGGTGAAGGTGGCGCCGGC
GGCGAAGGAGGCGCTGGAGGTGACTCGCTCTTGGAAACCGGAGGTGAAGG
AGGAGATGGAGGAATGGGTGGCGAGGGCGGCGTTGGAGGAGCTGGTGGCG
AAGGTGGTGACGGTGATGAGATGGGTGGAGCTGGTGGTGACGGTGGCGAC
GGTGGATTTGGCGCTGATGGAGGCAGTGGCGGGGCTGGTGGCGACGCGGA
AATCGGAGGGGATGGTGGAATGGGAGGTGATGGCGGAGATGGAGACGCGG
AGACACCGGCCGGTGATGGAGGTCTTGGCGGTGATGGCGGTTTAGGGGAA
GAGCTTGACGGATTTGGTGGTCTGGGTGGAGCTGGTGGAGACGACCTTGC
GTAA
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