Gcaud1246.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1246.t1
Unique Name	Gcaud1246.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	460

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_627_length_20665_cov_4.535384	contig	NODE_627_length_20665_cov_4.535384:13690..15069 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122129.AUEF01000011_gene1298
Preferred name	oxlT
PFAMs	MFS_1
Max annot lvl	91061\|Bacilli
KEGG ko	ko:K08177
KEGG TC	2.A.1.11
Evalue	1.01e-10
EggNOG OGs	COG2223@1\|root,COG2223@2\|Bacteria,1TPR9@1239\|Firmicutes,4HB93@91061\|Bacilli,4GYS9@90964\|Staphylococcaceae
Description	Major Facilitator Superfamily
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1246	Gcaud1246	Gracilaria caudata M_176_S67 male	gene	NODE_627_length_20665_cov_4.535384 13690..15069 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1246.t1.stop1	Gcaud1246.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_627_length_20665_cov_4.535384 13690..13692 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1246.t1.CDS1	Gcaud1246.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_627_length_20665_cov_4.535384 13690..15069 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1246.t1.exon1	Gcaud1246.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_627_length_20665_cov_4.535384 13690..15069 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1246.t1.start1	Gcaud1246.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_627_length_20665_cov_4.535384 15067..15069 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1246.t1	Gcaud1246.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_627_length_20665_cov_4.535384 13690..15069 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_627_length_20665_cov_4.535384:13690..15069-
coding sequence from alignment at NODE_627_length_20665_cov_4.535384:13690..15069-

mRNA sequence

>Gcaud1246.t1 ID=Gcaud1246.t1|Name=Gcaud1246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=460bp
MELRKYRYVAPIPASFLLQAIGGLLYAQGVCVAMIKRAEYTMCISIASFC
TCCGMLFAGMFINKMVPRSYAHLSTVYVSFIGSLGLCGQILIAIALAFNN
LPLLYVSAVMYGFGCGIFFISSVDVMQSWMPESPGFIAGIGLLWCSAGSI
IGVEAYRSLSSSLGSPIPAIAVMGIISVFLALPVSRLLQKPPEGWHPDPS
LSLDAKETTSILNASDQLYYSTPEERKALSLQEIVTDMQFYLILMTYAAT
VGPGFAITLGFQSMVMNMFDVGIGWASSLYIGIVVFGIAARPLIGMCTDK
IGDRYSSCPRLSGVKRTTQLLLFVQLLATICTPYFVRRGYLYSFVAACAV
VYMTCTGGPVVSACFSGSVYDQRNACLIYSLIGVSAGVSDFFFSWTVLKG
NQTAAVQHISNGLDLRIHANDYNLFLWCSFLLSVAGLYATHYIGKSQKLL
PPSKRPSDR*

spliced messenger RNA

>Gcaud1246.t1 ID=Gcaud1246.t1|Name=Gcaud1246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:13690..15069- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTTCGCAAGTATCGTTATGTCGCCCCTATCCCAGCCTCCTTCCT
TCTCCAAGCGATTGGTGGGCTTCTTTACGCGCAAGGAGTGTGCGTCGCGA
TGATCAAACGGGCTGAGTACACAATGTGCATCAGCATTGCAAGCTTCTGC
ACGTGCTGTGGTATGTTGTTTGCTGGAATGTTCATAAACAAGATGGTGCC
ACGATCGTACGCTCATTTATCAACGGTGTACGTCTCATTCATTGGTAGTC
TGGGGCTCTGCGGCCAGATCCTTATCGCTATCGCGCTTGCCTTCAATAAT
CTTCCCCTTCTATATGTGTCAGCAGTGATGTATGGCTTTGGATGCGGCAT
CTTTTTCATTTCTTCAGTCGATGTGATGCAGAGCTGGATGCCAGAGTCAC
CTGGATTCATTGCGGGCATTGGATTATTATGGTGCTCGGCTGGTTCGATT
ATTGGTGTTGAAGCGTATCGGTCTCTCTCGTCGTCATTGGGAAGTCCGAT
TCCCGCTATAGCCGTAATGGGAATCATCTCAGTGTTCTTGGCGCTTCCGG
TTTCCAGGCTACTACAAAAGCCCCCGGAAGGATGGCATCCAGATCCTTCC
CTGAGCCTCGACGCGAAAGAAACAACCAGCATTCTGAACGCTAGTGATCA
GTTGTACTACTCAACTCCAGAAGAACGCAAGGCCTTGAGTTTGCAAGAAA
TTGTTACCGATATGCAGTTCTATTTGATTTTAATGACGTACGCGGCAACA
GTTGGACCGGGCTTCGCTATAACTCTCGGGTTTCAAAGTATGGTGATGAA
TATGTTTGACGTTGGCATTGGCTGGGCTAGCTCTTTATACATCGGAATTG
TTGTTTTTGGTATCGCAGCTCGTCCTTTGATCGGGATGTGCACAGATAAG
ATTGGTGACCGGTACTCGTCATGTCCTCGTCTTAGCGGTGTGAAACGAAC
GACGCAACTTTTACTCTTCGTACAACTGCTAGCAACGATTTGTACGCCGT
ACTTTGTTCGAAGGGGTTACCTCTATAGTTTTGTGGCGGCGTGTGCAGTA
GTGTACATGACTTGTACCGGTGGACCGGTGGTGAGTGCGTGCTTTTCTGG
CAGTGTATACGATCAGAGAAATGCGTGTCTGATATACTCTTTGATTGGGG
TAAGCGCGGGCGTTAGTGACTTCTTCTTTTCATGGACGGTTTTGAAGGGG
AACCAAACTGCAGCGGTGCAGCACATATCGAATGGCCTCGACTTGAGGAT
CCACGCAAACGACTACAACCTTTTTCTTTGGTGTTCGTTTTTGCTTTCCG
TAGCCGGTCTGTACGCGACGCACTATATCGGAAAGTCGCAAAAACTTTTA
CCTCCTTCCAAGAGGCCCAGTGACAGGTGA

protein sequence of Gcaud1246.t1

>Gcaud1246.t1 ID=Gcaud1246.t1|Name=Gcaud1246.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=460bp
MELRKYRYVAPIPASFLLQAIGGLLYAQGVCVAMIKRAEYTMCISIASFC
TCCGMLFAGMFINKMVPRSYAHLSTVYVSFIGSLGLCGQILIAIALAFNN
LPLLYVSAVMYGFGCGIFFISSVDVMQSWMPESPGFIAGIGLLWCSAGSI
IGVEAYRSLSSSLGSPIPAIAVMGIISVFLALPVSRLLQKPPEGWHPDPS
LSLDAKETTSILNASDQLYYSTPEERKALSLQEIVTDMQFYLILMTYAAT
VGPGFAITLGFQSMVMNMFDVGIGWASSLYIGIVVFGIAARPLIGMCTDK
IGDRYSSCPRLSGVKRTTQLLLFVQLLATICTPYFVRRGYLYSFVAACAV
VYMTCTGGPVVSACFSGSVYDQRNACLIYSLIGVSAGVSDFFFSWTVLKG
NQTAAVQHISNGLDLRIHANDYNLFLWCSFLLSVAGLYATHYIGKSQKLL
PPSKRPSDR*

mRNA from alignment at NODE_627_length_20665_cov_4.535384:13690..15069-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1246.t1 ID=Gcaud1246.t1|Name=Gcaud1246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:13690..15069- (Gracilaria caudata M_176_S67 male)
ATGGAGCTTCGCAAGTATCGTTATGTCGCCCCTATCCCAGCCTCCTTCCT
TCTCCAAGCGATTGGTGGGCTTCTTTACGCGCAAGGAGTGTGCGTCGCGA
TGATCAAACGGGCTGAGTACACAATGTGCATCAGCATTGCAAGCTTCTGC
ACGTGCTGTGGTATGTTGTTTGCTGGAATGTTCATAAACAAGATGGTGCC
ACGATCGTACGCTCATTTATCAACGGTGTACGTCTCATTCATTGGTAGTC
TGGGGCTCTGCGGCCAGATCCTTATCGCTATCGCGCTTGCCTTCAATAAT
CTTCCCCTTCTATATGTGTCAGCAGTGATGTATGGCTTTGGATGCGGCAT
CTTTTTCATTTCTTCAGTCGATGTGATGCAGAGCTGGATGCCAGAGTCAC
CTGGATTCATTGCGGGCATTGGATTATTATGGTGCTCGGCTGGTTCGATT
ATTGGTGTTGAAGCGTATCGGTCTCTCTCGTCGTCATTGGGAAGTCCGAT
TCCCGCTATAGCCGTAATGGGAATCATCTCAGTGTTCTTGGCGCTTCCGG
TTTCCAGGCTACTACAAAAGCCCCCGGAAGGATGGCATCCAGATCCTTCC
CTGAGCCTCGACGCGAAAGAAACAACCAGCATTCTGAACGCTAGTGATCA
GTTGTACTACTCAACTCCAGAAGAACGCAAGGCCTTGAGTTTGCAAGAAA
TTGTTACCGATATGCAGTTCTATTTGATTTTAATGACGTACGCGGCAACA
GTTGGACCGGGCTTCGCTATAACTCTCGGGTTTCAAAGTATGGTGATGAA
TATGTTTGACGTTGGCATTGGCTGGGCTAGCTCTTTATACATCGGAATTG
TTGTTTTTGGTATCGCAGCTCGTCCTTTGATCGGGATGTGCACAGATAAG
ATTGGTGACCGGTACTCGTCATGTCCTCGTCTTAGCGGTGTGAAACGAAC
GACGCAACTTTTACTCTTCGTACAACTGCTAGCAACGATTTGTACGCCGT
ACTTTGTTCGAAGGGGTTACCTCTATAGTTTTGTGGCGGCGTGTGCAGTA
GTGTACATGACTTGTACCGGTGGACCGGTGGTGAGTGCGTGCTTTTCTGG
CAGTGTATACGATCAGAGAAATGCGTGTCTGATATACTCTTTGATTGGGG
TAAGCGCGGGCGTTAGTGACTTCTTCTTTTCATGGACGGTTTTGAAGGGG
AACCAAACTGCAGCGGTGCAGCACATATCGAATGGCCTCGACTTGAGGAT
CCACGCAAACGACTACAACCTTTTTCTTTGGTGTTCGTTTTTGCTTTCCG
TAGCCGGTCTGTACGCGACGCACTATATCGGAAAGTCGCAAAAACTTTTA
CCTCCTTCCAAGAGGCCCAGTGACAGGTGA

Coding sequence (CDS) from alignment at NODE_627_length_20665_cov_4.535384:13690..15069-

>Gcaud1246.t1 ID=Gcaud1246.t1|Name=Gcaud1246.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1380bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:13690..15069- (Gracilaria caudata M_176_S67 male)
ATGGAGCTTCGCAAGTATCGTTATGTCGCCCCTATCCCAGCCTCCTTCCT
TCTCCAAGCGATTGGTGGGCTTCTTTACGCGCAAGGAGTGTGCGTCGCGA
TGATCAAACGGGCTGAGTACACAATGTGCATCAGCATTGCAAGCTTCTGC
ACGTGCTGTGGTATGTTGTTTGCTGGAATGTTCATAAACAAGATGGTGCC
ACGATCGTACGCTCATTTATCAACGGTGTACGTCTCATTCATTGGTAGTC
TGGGGCTCTGCGGCCAGATCCTTATCGCTATCGCGCTTGCCTTCAATAAT
CTTCCCCTTCTATATGTGTCAGCAGTGATGTATGGCTTTGGATGCGGCAT
CTTTTTCATTTCTTCAGTCGATGTGATGCAGAGCTGGATGCCAGAGTCAC
CTGGATTCATTGCGGGCATTGGATTATTATGGTGCTCGGCTGGTTCGATT
ATTGGTGTTGAAGCGTATCGGTCTCTCTCGTCGTCATTGGGAAGTCCGAT
TCCCGCTATAGCCGTAATGGGAATCATCTCAGTGTTCTTGGCGCTTCCGG
TTTCCAGGCTACTACAAAAGCCCCCGGAAGGATGGCATCCAGATCCTTCC
CTGAGCCTCGACGCGAAAGAAACAACCAGCATTCTGAACGCTAGTGATCA
GTTGTACTACTCAACTCCAGAAGAACGCAAGGCCTTGAGTTTGCAAGAAA
TTGTTACCGATATGCAGTTCTATTTGATTTTAATGACGTACGCGGCAACA
GTTGGACCGGGCTTCGCTATAACTCTCGGGTTTCAAAGTATGGTGATGAA
TATGTTTGACGTTGGCATTGGCTGGGCTAGCTCTTTATACATCGGAATTG
TTGTTTTTGGTATCGCAGCTCGTCCTTTGATCGGGATGTGCACAGATAAG
ATTGGTGACCGGTACTCGTCATGTCCTCGTCTTAGCGGTGTGAAACGAAC
GACGCAACTTTTACTCTTCGTACAACTGCTAGCAACGATTTGTACGCCGT
ACTTTGTTCGAAGGGGTTACCTCTATAGTTTTGTGGCGGCGTGTGCAGTA
GTGTACATGACTTGTACCGGTGGACCGGTGGTGAGTGCGTGCTTTTCTGG
CAGTGTATACGATCAGAGAAATGCGTGTCTGATATACTCTTTGATTGGGG
TAAGCGCGGGCGTTAGTGACTTCTTCTTTTCATGGACGGTTTTGAAGGGG
AACCAAACTGCAGCGGTGCAGCACATATCGAATGGCCTCGACTTGAGGAT
CCACGCAAACGACTACAACCTTTTTCTTTGGTGTTCGTTTTTGCTTTCCG
TAGCCGGTCTGTACGCGACGCACTATATCGGAAAGTCGCAAAAACTTTTA
CCTCCTTCCAAGAGGCCCAGTGACAGGTGA