Gcaud1243.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1243.t1
Unique NameGcaud1243.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_627_length_20665_cov_4.535384contigNODE_627_length_20665_cov_4.535384:4444..5378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9258.ENSOANP00000014813
Preferred nameSPINT1
PFAMsKunitz_BPTI,Ldl_recept_a,MANEC
Max annot lvl33208|Metazoa
KEGG koko:K15619
KEGG Pathwayko05202,ko05215,map05202,map05215
GOsGO:0000003,GO:0001568,GO:0001701,GO:0001763,GO:0001838,GO:0001841,GO:0001843,GO:0001890,GO:0001892,GO:0001944,GO:0002009,GO:0003006,GO:0003674,GO:0004857,GO:0004866,GO:0004867,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0008150,GO:0008285,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009987,GO:0010466,GO:0010605,GO:0010720,GO:0010951,GO:0014013,GO:0014015,GO:0014020,GO:0016020,GO:0016043,GO:0016331,GO:0019222,GO:0021915,GO:0022008,GO:0022414,GO:0030154,GO:0030162,GO:0030198,GO:0030234,GO:0030414,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0035148,GO:0035239,GO:0035295,GO:0042127,GO:0043009,GO:0043062,GO:0043086,GO:0044092,GO:0044464,GO:0045595,GO:0045597,GO:0045685,GO:0045687,GO:0045861,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048598,GO:0048608,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051960,GO:0051962,GO:0052547,GO:0052548,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0060606,GO:0060669,GO:0060670,GO:0060674,GO:0060711,GO:0060713,GO:0061134,GO:0061135,GO:0061138,GO:0061458,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0072175,GO:0072358,GO:0072359,GO:0080090,GO:0098772,GO:2000026,GO:2000177,GO:2000178
Evalue1.42e-06
EggNOG OGsKOG4295@1|root,KOG4295@2759|Eukaryota,38H0X@33154|Opisthokonta,3BC8K@33208|Metazoa,3CTKT@33213|Bilateria,4835I@7711|Chordata,490IE@7742|Vertebrata,3JEAR@40674|Mammalia
DescriptionKunitz-type protease inhibitor 1
COG categoryT
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1243Gcaud1243Gracilaria caudata M_176_S67 malegeneNODE_627_length_20665_cov_4.535384 4444..5378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1243.t1Gcaud1243.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_627_length_20665_cov_4.535384 4444..5378 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1243.t1.stop1Gcaud1243.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_627_length_20665_cov_4.535384 4444..4446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1243.t1.CDS1Gcaud1243.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_627_length_20665_cov_4.535384 4444..4543 -
Gcaud1243.t1.CDS2Gcaud1243.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_627_length_20665_cov_4.535384 4801..4895 -
Gcaud1243.t1.CDS3Gcaud1243.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_627_length_20665_cov_4.535384 4989..5378 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1243.t1.exon1Gcaud1243.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_627_length_20665_cov_4.535384 4444..4543 -
Gcaud1243.t1.exon2Gcaud1243.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_627_length_20665_cov_4.535384 4801..4895 -
Gcaud1243.t1.exon3Gcaud1243.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_627_length_20665_cov_4.535384 4989..5378 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1243.t1.intron1Gcaud1243.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_627_length_20665_cov_4.535384 4544..4800 -
Gcaud1243.t1.intron2Gcaud1243.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_627_length_20665_cov_4.535384 4896..4988 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1243.t1.start1Gcaud1243.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_627_length_20665_cov_4.535384 5376..5378 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1243.t1 ID=Gcaud1243.t1|Name=Gcaud1243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=195bp
MASQNEYVALNHAGEHHPYTHQAIMQDRLPISYRPSNRALIAAGIFAVAC
IAFVSMHGVDHAYYPSMRFSRFPLLPRSRHSANAYPSRMGMNTTDRWTYD
PNLKPSCSGTGQTGYCQMYTQRYYYDDSTGDCVRFTYGGCPYPEGVNPGF
EDYLECLTKCAKLLSSGENQKEGSPKAQDDYDGWFASNVGANRR*
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spliced messenger RNA

>Gcaud1243.t1 ID=Gcaud1243.t1|Name=Gcaud1243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:4444..5378- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCCAGAACGAGTACGTCGCGCTCAACCACGCGGGAGAACACCA
TCCTTACACGCACCAGGCCATCATGCAAGATCGCCTGCCCATCTCCTACC
GCCCAAGCAATCGTGCTCTCATCGCAGCAGGAATATTTGCTGTGGCTTGC
ATAGCATTCGTCTCAATGCATGGCGTGGATCATGCCTACTACCCTTCGAT
GCGTTTTTCTCGTTTCCCTCTTCTCCCGCGCTCTCGGCATTCTGCGAACG
CGTATCCCAGCAGAATGGGTATGAATACAACGGACCGCTGGACGTATGAC
CCGAATTTGAAACCGAGTTGCTCAGGAACCGGTCAAACCGGCTATTGTCA
GATGTACACTCAGAGGTATTATTACGATGACAGCACCGGAGATTGCGTGC
GCTTTACGTACGGAGGCTGTCCCTATCCTGAGGGCGTAAACCCGGGCTTT
GAAGATTACCTTGAATGTTTGACTAAATGTGCAAAGCTTCTTTCCAGTGG
TGAGAACCAAAAGGAGGGCTCACCGAAAGCACAGGACGACTACGACGGCT
GGTTCGCCAGCAATGTTGGAGCAAATCGTCGTTAG
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protein sequence of Gcaud1243.t1

>Gcaud1243.t1 ID=Gcaud1243.t1|Name=Gcaud1243.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=195bp
MASQNEYVALNHAGEHHPYTHQAIMQDRLPISYRPSNRALIAAGIFAVAC
IAFVSMHGVDHAYYPSMRFSRFPLLPRSRHSANAYPSRMGMNTTDRWTYD
PNLKPSCSGTGQTGYCQMYTQRYYYDDSTGDCVRFTYGGCPYPEGVNPGF
EDYLECLTKCAKLLSSGENQKEGSPKAQDDYDGWFASNVGANRR*
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mRNA from alignment at NODE_627_length_20665_cov_4.535384:4444..5378-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1243.t1 ID=Gcaud1243.t1|Name=Gcaud1243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=935bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:4444..5378- (Gracilaria caudata M_176_S67 male)
ATGGCCTCCCAGAACGAGTACGTCGCGCTCAACCACGCGGGAGAACACCA
TCCTTACACGCACCAGGCCATCATGCAAGATCGCCTGCCCATCTCCTACC
GCCCAAGCAATCGTGCTCTCATCGCAGCAGGAATATTTGCTGTGGCTTGC
ATAGCATTCGTCTCAATGCATGGCGTGGATCATGCCTACTACCCTTCGAT
GCGTTTTTCTCGTTTCCCTCTTCTCCCGCGCTCTCGGCATTCTGCGAACG
CGTATCCCAGCAGAATGGGTATGAATACAACGGACCGCTGGACGTATGAC
CCGAATTTGAAACCGAGTTGCTCAGGAACCGGTCAAACCGGCTATTGTCA
GATGTACACTCAGAGGTATTATTACGATGACAGCACCGGAGTAAGTACCA
TTCGCATCATTTCGAGCGTGTGAGGGGAATAGTATACGTTCTAACCATGG
CTGAACTTCTTTTTGCTTCTCTGTGTGTGCAAGGATTGCGTGCGCTTTAC
GTACGGAGGCTGTCCCTATCCTGAGGGCGTAAACCCGGGCTTTGAAGATT
ACCTTGAATGTTTGACTAAATGTGCAAAGTTCTGGTAGATGAGACAAAAT
AGCTTCGTTTGTAGGTATAAAATTGTGAGAGCGGATCAAAGCTTCGGAAC
GTGTGATTTGTGCCATTGGCGCTCTTCCCGTTTTGTTCTCAATTGAAGGG
GTAAATTGACATAACACATTGATGAAACGGAAATAGAGTACGCTCCATGA
TTTGTTGAGACACTTTGTTTTCTAGTTTTCCACTCGGGTATCCTCTTCTG
GCCCATACAGTCGCGATTCGCTTGTATACAATCAGGCTTCTTTCCAGTGG
TGAGAACCAAAAGGAGGGCTCACCGAAAGCACAGGACGACTACGACGGCT
GGTTCGCCAGCAATGTTGGAGCAAATCGTCGTTAG
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Coding sequence (CDS) from alignment at NODE_627_length_20665_cov_4.535384:4444..5378-

>Gcaud1243.t1 ID=Gcaud1243.t1|Name=Gcaud1243.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=585bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:4444..5378- (Gracilaria caudata M_176_S67 male)
ATGGCCTCCCAGAACGAGTACGTCGCGCTCAACCACGCGGGAGAACACCA
TCCTTACACGCACCAGGCCATCATGCAAGATCGCCTGCCCATCTCCTACC
GCCCAAGCAATCGTGCTCTCATCGCAGCAGGAATATTTGCTGTGGCTTGC
ATAGCATTCGTCTCAATGCATGGCGTGGATCATGCCTACTACCCTTCGAT
GCGTTTTTCTCGTTTCCCTCTTCTCCCGCGCTCTCGGCATTCTGCGAACG
CGTATCCCAGCAGAATGGGTATGAATACAACGGACCGCTGGACGTATGAC
CCGAATTTGAAACCGAGTTGCTCAGGAACCGGTCAAACCGGCTATTGTCA
GATGTACACTCAGAGGTATTATTACGATGACAGCACCGGAGATTGCGTGC
GCTTTACGTACGGAGGCTGTCCCTATCCTGAGGGCGTAAACCCGGGCTTT
GAAGATTACCTTGAATGTTTGACTAAATGTGCAAAGCTTCTTTCCAGTGG
TGAGAACCAAAAGGAGGGCTCACCGAAAGCACAGGACGACTACGACGGCT
GGTTCGCCAGCAATGTTGGAGCAAATCGTCGTTAG
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