Gcaud1233.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1233.t1
Unique NameGcaud1233.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2904_length_4424_cov_5.636511contigNODE_2904_length_4424_cov_5.636511:15..836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1233Gcaud1233Gracilaria caudata M_176_S67 malegeneNODE_2904_length_4424_cov_5.636511 15..836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1233.t1Gcaud1233.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2904_length_4424_cov_5.636511 15..836 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1233.t1.stop1Gcaud1233.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2904_length_4424_cov_5.636511 15..17 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1233.t1.CDS1Gcaud1233.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2904_length_4424_cov_5.636511 15..573 -
Gcaud1233.t1.CDS2Gcaud1233.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2904_length_4424_cov_5.636511 650..727 -
Gcaud1233.t1.CDS3Gcaud1233.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2904_length_4424_cov_5.636511 814..836 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1233.t1.exon1Gcaud1233.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2904_length_4424_cov_5.636511 15..573 -
Gcaud1233.t1.exon2Gcaud1233.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2904_length_4424_cov_5.636511 650..727 -
Gcaud1233.t1.exon3Gcaud1233.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2904_length_4424_cov_5.636511 814..836 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1233.t1.intron1Gcaud1233.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2904_length_4424_cov_5.636511 574..649 -
Gcaud1233.t1.intron2Gcaud1233.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2904_length_4424_cov_5.636511 728..813 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1233.t1.start1Gcaud1233.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2904_length_4424_cov_5.636511 834..836 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1233.t1 ID=Gcaud1233.t1|Name=Gcaud1233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=220bp
MDKVNAYKLHTICLQSLRINRSIAALLPFNLLSYVVLAACSAQASALSPT
SRVDVGSATSLASINGNEHRLHDEANEVTVRSVLAEAPEASPEELLVDAS
PEPSVKRSPEPSAVAISPFPVPENEQQSIIQNSFIVQISDRCDASCEADV
QKALLQKEVTDSCSLQGNVTIGSLNQLFISCEGGGASISSVEVESAIDGA
VRAAGLSIVSVDNDGVVSI*
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spliced messenger RNA

>Gcaud1233.t1 ID=Gcaud1233.t1|Name=Gcaud1233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_2904_length_4424_cov_5.636511:15..836- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAAGTCAATGCGTACAAATTACACACCATTTGCCTCCAATCTCT
GCGTATAAATCGAAGCATTGCTGCGCTGTTGCCTTTCAACTTGCTTTCGT
ACGTGGTCCTAGCCGCTTGCAGTGCTCAAGCCTCTGCTTTGTCCCCAACC
TCGCGTGTGGACGTTGGCTCAGCAACTTCTTTGGCATCGATCAACGGAAA
TGAGCACAGGCTGCATGATGAAGCTAATGAAGTGACTGTTCGTTCCGTTC
TTGCCGAAGCGCCTGAAGCCTCTCCCGAAGAACTTCTAGTGGATGCAAGT
CCGGAGCCCAGCGTCAAGCGCTCTCCAGAGCCGTCTGCCGTTGCTATCTC
ACCTTTTCCCGTACCAGAAAACGAGCAACAATCTATCATTCAGAATTCAT
TCATCGTTCAAATCAGCGACCGCTGTGACGCCTCATGTGAAGCGGACGTC
CAGAAGGCGCTGCTTCAGAAAGAAGTCACCGATTCGTGCTCCCTGCAAGG
CAACGTGACCATCGGAAGCCTTAACCAGCTGTTTATCAGCTGCGAGGGAG
GTGGGGCGTCCATCAGCTCCGTCGAGGTTGAAAGCGCCATCGACGGCGCA
GTGCGCGCCGCCGGTCTATCAATTGTTTCAGTTGACAATGATGGCGTTGT
TTCGATTTGA
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protein sequence of Gcaud1233.t1

>Gcaud1233.t1 ID=Gcaud1233.t1|Name=Gcaud1233.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
MDKVNAYKLHTICLQSLRINRSIAALLPFNLLSYVVLAACSAQASALSPT
SRVDVGSATSLASINGNEHRLHDEANEVTVRSVLAEAPEASPEELLVDAS
PEPSVKRSPEPSAVAISPFPVPENEQQSIIQNSFIVQISDRCDASCEADV
QKALLQKEVTDSCSLQGNVTIGSLNQLFISCEGGGASISSVEVESAIDGA
VRAAGLSIVSVDNDGVVSI*
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mRNA from alignment at NODE_2904_length_4424_cov_5.636511:15..836-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1233.t1 ID=Gcaud1233.t1|Name=Gcaud1233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_2904_length_4424_cov_5.636511:15..836- (Gracilaria caudata M_176_S67 male)
ATGGACAAAGTCAATGCGTACAAGTGCGTTTGGGCCCCAAACCAGAGGCA
ACGTTGGCGTTCGCACTTTTGTGCGCTAACCGTTGCCAACGTATTCTTAT
TGCGTTAAGATTACACACCATTTGCCTCCAATCTCTGCGTATAAATCGAA
GCATTGCTGCGCTGTTGCCTTTCAACTTGCTTTCGTAGTGCGTATCGTAC
CTTGCACATGATGGCCTTTCATCACAGTGGATCCTTTGCTTGTATCTGTG
CGCTTCTTCTTAGCGTGGTCCTAGCCGCTTGCAGTGCTCAAGCCTCTGCT
TTGTCCCCAACCTCGCGTGTGGACGTTGGCTCAGCAACTTCTTTGGCATC
GATCAACGGAAATGAGCACAGGCTGCATGATGAAGCTAATGAAGTGACTG
TTCGTTCCGTTCTTGCCGAAGCGCCTGAAGCCTCTCCCGAAGAACTTCTA
GTGGATGCAAGTCCGGAGCCCAGCGTCAAGCGCTCTCCAGAGCCGTCTGC
CGTTGCTATCTCACCTTTTCCCGTACCAGAAAACGAGCAACAATCTATCA
TTCAGAATTCATTCATCGTTCAAATCAGCGACCGCTGTGACGCCTCATGT
GAAGCGGACGTCCAGAAGGCGCTGCTTCAGAAAGAAGTCACCGATTCGTG
CTCCCTGCAAGGCAACGTGACCATCGGAAGCCTTAACCAGCTGTTTATCA
GCTGCGAGGGAGGTGGGGCGTCCATCAGCTCCGTCGAGGTTGAAAGCGCC
ATCGACGGCGCAGTGCGCGCCGCCGGTCTATCAATTGTTTCAGTTGACAA
TGATGGCGTTGTTTCGATTTGA
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Coding sequence (CDS) from alignment at NODE_2904_length_4424_cov_5.636511:15..836-

>Gcaud1233.t1 ID=Gcaud1233.t1|Name=Gcaud1233.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=660bp|location=Sequence derived from alignment at NODE_2904_length_4424_cov_5.636511:15..836- (Gracilaria caudata M_176_S67 male)
ATGGACAAAGTCAATGCGTACAAATTACACACCATTTGCCTCCAATCTCT
GCGTATAAATCGAAGCATTGCTGCGCTGTTGCCTTTCAACTTGCTTTCGT
ACGTGGTCCTAGCCGCTTGCAGTGCTCAAGCCTCTGCTTTGTCCCCAACC
TCGCGTGTGGACGTTGGCTCAGCAACTTCTTTGGCATCGATCAACGGAAA
TGAGCACAGGCTGCATGATGAAGCTAATGAAGTGACTGTTCGTTCCGTTC
TTGCCGAAGCGCCTGAAGCCTCTCCCGAAGAACTTCTAGTGGATGCAAGT
CCGGAGCCCAGCGTCAAGCGCTCTCCAGAGCCGTCTGCCGTTGCTATCTC
ACCTTTTCCCGTACCAGAAAACGAGCAACAATCTATCATTCAGAATTCAT
TCATCGTTCAAATCAGCGACCGCTGTGACGCCTCATGTGAAGCGGACGTC
CAGAAGGCGCTGCTTCAGAAAGAAGTCACCGATTCGTGCTCCCTGCAAGG
CAACGTGACCATCGGAAGCCTTAACCAGCTGTTTATCAGCTGCGAGGGAG
GTGGGGCGTCCATCAGCTCCGTCGAGGTTGAAAGCGCCATCGACGGCGCA
GTGCGCGCCGCCGGTCTATCAATTGTTTCAGTTGACAATGATGGCGTTGT
TTCGATTTGA
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