Gcaud1222.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1222.t1
Unique NameGcaud1222.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2412_length_5731_cov_4.498050contigNODE_2412_length_5731_cov_4.498050:2..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1222Gcaud1222Gracilaria caudata M_176_S67 malegeneNODE_2412_length_5731_cov_4.498050 2..468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1222.t1.CDS1Gcaud1222.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2412_length_5731_cov_4.498050 2..468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1222.t1.exon1Gcaud1222.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2412_length_5731_cov_4.498050 2..468 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1222.t1.start1Gcaud1222.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2412_length_5731_cov_4.498050 466..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1222.t1Gcaud1222.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2412_length_5731_cov_4.498050 2..468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1222.t1 ID=Gcaud1222.t1|Name=Gcaud1222.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=156bp
MTRTESDARPDTPLLCAEHTIPVKQHQYVYDLNEAADSLELKNQHHQHTE
PLSLTVNYESVLKGYLLVALSSIVFGALTTALLRHATNDFGFRPQTILFA
VGAVNLFISAPLLLLIECTSRSSFALEEWKGVLLLLRGVAGSASNLMFFE
AVQRIP
back to top

spliced messenger RNA

>Gcaud1222.t1 ID=Gcaud1222.t1|Name=Gcaud1222.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=467bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:2..468- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGGACCGAATCTGACGCAAGGCCCGATACGCCGCTTTTGTGTGC
CGAACACACAATTCCTGTGAAGCAACATCAATACGTTTATGACCTCAATG
AAGCCGCCGACAGTCTCGAGCTCAAGAACCAGCACCATCAACACACCGAG
CCCCTGTCCCTTACGGTGAATTACGAATCTGTGTTGAAGGGATACCTTCT
GGTTGCGCTCTCTTCAATCGTTTTCGGCGCGCTAACCACCGCATTGCTCC
GTCATGCTACCAACGATTTCGGATTCCGGCCGCAGACCATATTGTTCGCG
GTGGGTGCCGTAAACCTGTTCATTTCGGCCCCGCTCTTGTTACTGATCGA
GTGCACGTCGCGTAGTTCCTTCGCGTTGGAAGAATGGAAAGGTGTCTTGT
TGCTGCTCCGCGGCGTCGCCGGATCTGCCTCCAACCTCATGTTCTTCGAG
GCCGTGCAACGGATTCC
back to top

protein sequence of Gcaud1222.t1

>Gcaud1222.t1 ID=Gcaud1222.t1|Name=Gcaud1222.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=156bp
MTRTESDARPDTPLLCAEHTIPVKQHQYVYDLNEAADSLELKNQHHQHTE
PLSLTVNYESVLKGYLLVALSSIVFGALTTALLRHATNDFGFRPQTILFA
VGAVNLFISAPLLLLIECTSRSSFALEEWKGVLLLLRGVAGSASNLMFFE
AVQRIP
back to top

mRNA from alignment at NODE_2412_length_5731_cov_4.498050:2..468-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1222.t1 ID=Gcaud1222.t1|Name=Gcaud1222.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=467bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:2..468- (Gracilaria caudata M_176_S67 male)
ATGACGCGGACCGAATCTGACGCAAGGCCCGATACGCCGCTTTTGTGTGC
CGAACACACAATTCCTGTGAAGCAACATCAATACGTTTATGACCTCAATG
AAGCCGCCGACAGTCTCGAGCTCAAGAACCAGCACCATCAACACACCGAG
CCCCTGTCCCTTACGGTGAATTACGAATCTGTGTTGAAGGGATACCTTCT
GGTTGCGCTCTCTTCAATCGTTTTCGGCGCGCTAACCACCGCATTGCTCC
GTCATGCTACCAACGATTTCGGATTCCGGCCGCAGACCATATTGTTCGCG
GTGGGTGCCGTAAACCTGTTCATTTCGGCCCCGCTCTTGTTACTGATCGA
GTGCACGTCGCGTAGTTCCTTCGCGTTGGAAGAATGGAAAGGTGTCTTGT
TGCTGCTCCGCGGCGTCGCCGGATCTGCCTCCAACCTCATGTTCTTCGAG
GCCGTGCAACGGATTCC
back to top

Coding sequence (CDS) from alignment at NODE_2412_length_5731_cov_4.498050:2..468-

>Gcaud1222.t1 ID=Gcaud1222.t1|Name=Gcaud1222.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=467bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:2..468- (Gracilaria caudata M_176_S67 male)
ATGACGCGGACCGAATCTGACGCAAGGCCCGATACGCCGCTTTTGTGTGC
CGAACACACAATTCCTGTGAAGCAACATCAATACGTTTATGACCTCAATG
AAGCCGCCGACAGTCTCGAGCTCAAGAACCAGCACCATCAACACACCGAG
CCCCTGTCCCTTACGGTGAATTACGAATCTGTGTTGAAGGGATACCTTCT
GGTTGCGCTCTCTTCAATCGTTTTCGGCGCGCTAACCACCGCATTGCTCC
GTCATGCTACCAACGATTTCGGATTCCGGCCGCAGACCATATTGTTCGCG
GTGGGTGCCGTAAACCTGTTCATTTCGGCCCCGCTCTTGTTACTGATCGA
GTGCACGTCGCGTAGTTCCTTCGCGTTGGAAGAATGGAAAGGTGTCTTGT
TGCTGCTCCGCGGCGTCGCCGGATCTGCCTCCAACCTCATGTTCTTCGAG
GCCGTGCAACGGATTCC
back to top