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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 296587.XP_002503674.1 |
| Preferred name | metH |
| PFAMs | B12-binding,B12-binding_2,Met_synt_B12,Pterin_bind,S-methyl_trans |
| Max annot lvl | 3041|Chlorophyta |
| KEGG rclass | RC00035,RC00113,RC01241 |
| KEGG ko | ko:K00548 |
| KEGG Reaction | R00946,R09365 |
| KEGG Pathway | ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230 |
| KEGG Module | M00017 |
| Evalue | 0.0 |
| EggNOG OGs | COG0646@1|root,KOG1579@2759|Eukaryota,37PZ9@33090|Viridiplantae,34JK1@3041|Chlorophyta |
| EC | 2.1.1.13 |
| Description | Methionine synthase |
| COG category | E |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1203.t1.start1 | Gcaud1203.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1977_length_7374_cov_5.226967 2532..2534 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1203.t1 ID=Gcaud1203.t1|Name=Gcaud1203.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=845bp MAQPSEFEPAIFAEIRAVLNERVMYIDGAMGTMIQRYKLKEHDFRGERYL NHSHDLQGNNDILSITRPDIIQEIHEQYLEAGSDFLETNTFSGTRIAQAD YELDTEKDVYDINFESAKVARAACDKYEAMDGKRRYVCGAIGPTNRTLSI SPDVNDPSFRNITYMEVVDAYYEQIHALAEGKVDVLLVETIFDTLNAKAA IFAIEKYFDDHSDQQRIPVFISGTVVDMSGRTLSGQTTEGFWTSVEHAKP IAVGLNCALGAKDMRQYIERLGRCSDAYIICYPNAGLPNAMGGYDQTGPE MAAELEPFSKGRLVNIVGGCCGSTPAHIKSIVETFSKVPPKPAPKPLPNM MRLSGLEQFVLDPSLVRFVNVGERCNVAGSMFFKKQVLAGKYEKMQEIAL KQVDNGAQVLDINFDEGLLDSHAVMRKFCNLLATEPDVAKVPFMIDSSKF DVVEQGLQCVQGKCIVNSISLKVGVDEFIRHAKLVKRYGAAVVVMAFDEE GQAAGRDDKVRICARAYKILVEDVKFNPNDIIFDPNILTVATGIEEHNNY AKDFFEATKIIKDTLPHCHISGGVSNISFSFRGNNALREAMHSAFLYHGI SNGMDMGIVNAGIIPVYSDIPETLLNLIEDVLLNRSTEATENLLEFSLSM DKKSSVGGGNDADKNKWRVLPVKERLSHALVKGIDEFVNGDVEEARQAAD KPLDVIEGPLMDGMNIVGDLFGAGKMFLPQVIKSARVMKKAVAVLIPYME AEKEAKIAEAKARGETASEDDMYAGTMVIATVKGDVHDIGKNIVAVVLGC NNYRVVDLGVMCPCDKIIDAAREHKANIIGLSGLITPSLDEMVDX back to topspliced messenger RNA >Gcaud1203.t1 ID=Gcaud1203.t1|Name=Gcaud1203.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2533bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:2..2534- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTCAACCGTCCGAATTCGAGCCCGCTATATTTGCGGAGATTCGTGC CGTCCTCAATGAGCGTGTCATGTACATTGATGGTGCCATGGGTACCATGA TTCAACGCTACAAACTCAAGGAACACGATTTTCGTGGCGAGCGATACCTG AATCATTCCCATGACCTGCAAGGTAATAATGACATTCTGTCCATCACTCG TCCGGATATCATTCAAGAAATTCATGAACAATATCTTGAAGCAGGTTCGG ATTTCCTTGAAACGAATACCTTTTCGGGCACTCGCATTGCGCAAGCTGAT TACGAACTTGACACCGAGAAGGATGTGTATGATATAAACTTCGAGAGTGC CAAAGTCGCTCGTGCCGCATGTGACAAATATGAAGCCATGGACGGTAAGC GTCGTTATGTTTGTGGGGCAATTGGACCTACCAACCGAACTCTTAGTATT TCTCCTGATGTGAATGACCCGTCGTTTCGGAACATTACGTACATGGAGGT GGTCGATGCCTATTATGAACAGATACACGCCCTTGCCGAAGGCAAAGTGG ATGTTCTTCTCGTCGAGACAATTTTTGATACGCTCAATGCCAAGGCCGCT ATCTTTGCCATTGAAAAGTATTTTGATGACCATTCCGATCAACAACGAAT CCCAGTCTTTATTTCTGGTACTGTCGTAGACATGAGTGGCAGAACGCTTT CCGGTCAAACTACAGAAGGCTTTTGGACATCCGTCGAGCACGCCAAACCC ATAGCTGTTGGTCTCAACTGTGCGTTGGGTGCTAAGGATATGCGTCAATA CATCGAGCGTTTGGGACGTTGTTCTGATGCCTACATCATTTGCTACCCCA ACGCTGGTCTTCCGAACGCTATGGGAGGTTACGATCAGACTGGGCCGGAA ATGGCGGCGGAATTGGAACCGTTTTCGAAGGGTCGTCTCGTCAACATTGT AGGAGGATGCTGCGGTTCCACTCCTGCTCATATCAAGAGCATTGTTGAGA CCTTTAGCAAGGTTCCGCCGAAACCAGCACCCAAACCCCTTCCGAACATG ATGAGGCTCTCAGGTCTGGAACAATTTGTGTTGGACCCATCGCTTGTGCG ATTTGTCAATGTTGGTGAAAGGTGTAACGTTGCGGGTTCTATGTTTTTTA AAAAACAGGTCTTGGCTGGCAAGTACGAGAAGATGCAAGAAATTGCATTG AAACAAGTTGATAATGGTGCTCAAGTTCTGGATATAAACTTTGATGAGGG TTTGCTGGACTCGCATGCTGTGATGAGGAAGTTCTGCAATCTTTTGGCTA CCGAACCCGACGTGGCAAAAGTTCCGTTTATGATTGATTCCTCGAAGTTT GATGTCGTTGAACAGGGTCTACAATGTGTACAAGGCAAGTGCATTGTCAA CTCCATATCTCTCAAGGTCGGAGTGGACGAGTTTATTAGGCATGCCAAAC TCGTGAAGCGATATGGAGCAGCGGTTGTGGTCATGGCCTTTGATGAGGAA GGTCAGGCTGCGGGCCGTGATGACAAAGTCAGAATTTGTGCAAGGGCATA CAAGATCCTGGTCGAAGACGTCAAGTTTAATCCCAATGATATCATCTTCG ATCCGAATATTCTCACTGTTGCAACTGGTATCGAGGAGCATAACAACTAC GCGAAAGACTTCTTCGAGGCCACGAAGATTATCAAGGACACCCTGCCTCA CTGTCATATATCAGGTGGCGTTTCTAACATTTCCTTTTCGTTCCGTGGTA ACAATGCCCTTCGTGAGGCCATGCATTCGGCTTTCTTGTATCATGGTATC TCGAATGGAATGGATATGGGTATCGTGAACGCTGGTATCATTCCTGTATA CTCTGATATCCCTGAAACGCTGTTGAATCTCATCGAAGACGTGCTGCTCA ATCGTTCTACAGAGGCAACTGAAAATCTCTTGGAATTCTCACTCAGTATG GACAAGAAGAGTTCTGTGGGGGGCGGCAATGATGCAGACAAGAACAAGTG GCGCGTGTTGCCGGTCAAGGAAAGACTCTCACACGCTCTTGTGAAGGGCA TTGACGAGTTTGTTAATGGAGATGTTGAAGAAGCCCGTCAAGCTGCGGAC AAACCTCTTGACGTCATCGAAGGTCCTCTCATGGACGGCATGAACATTGT CGGTGATCTCTTCGGTGCTGGAAAGATGTTTCTGCCGCAGGTGATCAAAT CTGCTCGTGTCATGAAGAAGGCTGTAGCTGTACTAATTCCGTACATGGAA GCGGAAAAAGAAGCGAAAATTGCTGAGGCGAAAGCAAGGGGAGAAACCGC ATCAGAGGATGATATGTACGCTGGTACAATGGTAATTGCTACAGTGAAGG GTGACGTGCATGACATTGGAAAGAATATCGTGGCAGTTGTACTTGGCTGC AATAACTACAGGGTTGTTGACCTTGGCGTCATGTGTCCGTGCGACAAAAT CATTGACGCTGCCAGGGAACACAAGGCCAACATAATTGGTCTTTCCGGCC TCATTACCCCATCACTCGACGAAATGGTTGATG back to topprotein sequence of Gcaud1203.t1 >Gcaud1203.t1 ID=Gcaud1203.t1|Name=Gcaud1203.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=845bp
MAQPSEFEPAIFAEIRAVLNERVMYIDGAMGTMIQRYKLKEHDFRGERYL NHSHDLQGNNDILSITRPDIIQEIHEQYLEAGSDFLETNTFSGTRIAQAD YELDTEKDVYDINFESAKVARAACDKYEAMDGKRRYVCGAIGPTNRTLSI SPDVNDPSFRNITYMEVVDAYYEQIHALAEGKVDVLLVETIFDTLNAKAA IFAIEKYFDDHSDQQRIPVFISGTVVDMSGRTLSGQTTEGFWTSVEHAKP IAVGLNCALGAKDMRQYIERLGRCSDAYIICYPNAGLPNAMGGYDQTGPE MAAELEPFSKGRLVNIVGGCCGSTPAHIKSIVETFSKVPPKPAPKPLPNM MRLSGLEQFVLDPSLVRFVNVGERCNVAGSMFFKKQVLAGKYEKMQEIAL KQVDNGAQVLDINFDEGLLDSHAVMRKFCNLLATEPDVAKVPFMIDSSKF DVVEQGLQCVQGKCIVNSISLKVGVDEFIRHAKLVKRYGAAVVVMAFDEE GQAAGRDDKVRICARAYKILVEDVKFNPNDIIFDPNILTVATGIEEHNNY AKDFFEATKIIKDTLPHCHISGGVSNISFSFRGNNALREAMHSAFLYHGI SNGMDMGIVNAGIIPVYSDIPETLLNLIEDVLLNRSTEATENLLEFSLSM DKKSSVGGGNDADKNKWRVLPVKERLSHALVKGIDEFVNGDVEEARQAAD KPLDVIEGPLMDGMNIVGDLFGAGKMFLPQVIKSARVMKKAVAVLIPYME AEKEAKIAEAKARGETASEDDMYAGTMVIATVKGDVHDIGKNIVAVVLGC NNYRVVDLGVMCPCDKIIDAAREHKANIIGLSGLITPSLDEMVDX back to topmRNA from alignment at NODE_1977_length_7374_cov_5.226967:2..2534- Legend: CDSpolypeptideexonstart_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1203.t1 ID=Gcaud1203.t1|Name=Gcaud1203.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2533bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:2..2534- (Gracilaria caudata M_176_S67 male) ATGGCTCAACCGTCCGAATTCGAGCCCGCTATATTTGCGGAGATTCGTGC
CGTCCTCAATGAGCGTGTCATGTACATTGATGGTGCCATGGGTACCATGA
TTCAACGCTACAAACTCAAGGAACACGATTTTCGTGGCGAGCGATACCTG
AATCATTCCCATGACCTGCAAGGTAATAATGACATTCTGTCCATCACTCG
TCCGGATATCATTCAAGAAATTCATGAACAATATCTTGAAGCAGGTTCGG
ATTTCCTTGAAACGAATACCTTTTCGGGCACTCGCATTGCGCAAGCTGAT
TACGAACTTGACACCGAGAAGGATGTGTATGATATAAACTTCGAGAGTGC
CAAAGTCGCTCGTGCCGCATGTGACAAATATGAAGCCATGGACGGTAAGC
GTCGTTATGTTTGTGGGGCAATTGGACCTACCAACCGAACTCTTAGTATT
TCTCCTGATGTGAATGACCCGTCGTTTCGGAACATTACGTACATGGAGGT
GGTCGATGCCTATTATGAACAGATACACGCCCTTGCCGAAGGCAAAGTGG
ATGTTCTTCTCGTCGAGACAATTTTTGATACGCTCAATGCCAAGGCCGCT
ATCTTTGCCATTGAAAAGTATTTTGATGACCATTCCGATCAACAACGAAT
CCCAGTCTTTATTTCTGGTACTGTCGTAGACATGAGTGGCAGAACGCTTT
CCGGTCAAACTACAGAAGGCTTTTGGACATCCGTCGAGCACGCCAAACCC
ATAGCTGTTGGTCTCAACTGTGCGTTGGGTGCTAAGGATATGCGTCAATA
CATCGAGCGTTTGGGACGTTGTTCTGATGCCTACATCATTTGCTACCCCA
ACGCTGGTCTTCCGAACGCTATGGGAGGTTACGATCAGACTGGGCCGGAA
ATGGCGGCGGAATTGGAACCGTTTTCGAAGGGTCGTCTCGTCAACATTGT
AGGAGGATGCTGCGGTTCCACTCCTGCTCATATCAAGAGCATTGTTGAGA
CCTTTAGCAAGGTTCCGCCGAAACCAGCACCCAAACCCCTTCCGAACATG
ATGAGGCTCTCAGGTCTGGAACAATTTGTGTTGGACCCATCGCTTGTGCG
ATTTGTCAATGTTGGTGAAAGGTGTAACGTTGCGGGTTCTATGTTTTTTA
AAAAACAGGTCTTGGCTGGCAAGTACGAGAAGATGCAAGAAATTGCATTG
AAACAAGTTGATAATGGTGCTCAAGTTCTGGATATAAACTTTGATGAGGG
TTTGCTGGACTCGCATGCTGTGATGAGGAAGTTCTGCAATCTTTTGGCTA
CCGAACCCGACGTGGCAAAAGTTCCGTTTATGATTGATTCCTCGAAGTTT
GATGTCGTTGAACAGGGTCTACAATGTGTACAAGGCAAGTGCATTGTCAA
CTCCATATCTCTCAAGGTCGGAGTGGACGAGTTTATTAGGCATGCCAAAC
TCGTGAAGCGATATGGAGCAGCGGTTGTGGTCATGGCCTTTGATGAGGAA
GGTCAGGCTGCGGGCCGTGATGACAAAGTCAGAATTTGTGCAAGGGCATA
CAAGATCCTGGTCGAAGACGTCAAGTTTAATCCCAATGATATCATCTTCG
ATCCGAATATTCTCACTGTTGCAACTGGTATCGAGGAGCATAACAACTAC
GCGAAAGACTTCTTCGAGGCCACGAAGATTATCAAGGACACCCTGCCTCA
CTGTCATATATCAGGTGGCGTTTCTAACATTTCCTTTTCGTTCCGTGGTA
ACAATGCCCTTCGTGAGGCCATGCATTCGGCTTTCTTGTATCATGGTATC
TCGAATGGAATGGATATGGGTATCGTGAACGCTGGTATCATTCCTGTATA
CTCTGATATCCCTGAAACGCTGTTGAATCTCATCGAAGACGTGCTGCTCA
ATCGTTCTACAGAGGCAACTGAAAATCTCTTGGAATTCTCACTCAGTATG
GACAAGAAGAGTTCTGTGGGGGGCGGCAATGATGCAGACAAGAACAAGTG
GCGCGTGTTGCCGGTCAAGGAAAGACTCTCACACGCTCTTGTGAAGGGCA
TTGACGAGTTTGTTAATGGAGATGTTGAAGAAGCCCGTCAAGCTGCGGAC
AAACCTCTTGACGTCATCGAAGGTCCTCTCATGGACGGCATGAACATTGT
CGGTGATCTCTTCGGTGCTGGAAAGATGTTTCTGCCGCAGGTGATCAAAT
CTGCTCGTGTCATGAAGAAGGCTGTAGCTGTACTAATTCCGTACATGGAA
GCGGAAAAAGAAGCGAAAATTGCTGAGGCGAAAGCAAGGGGAGAAACCGC
ATCAGAGGATGATATGTACGCTGGTACAATGGTAATTGCTACAGTGAAGG
GTGACGTGCATGACATTGGAAAGAATATCGTGGCAGTTGTACTTGGCTGC
AATAACTACAGGGTTGTTGACCTTGGCGTCATGTGTCCGTGCGACAAAAT
CATTGACGCTGCCAGGGAACACAAGGCCAACATAATTGGTCTTTCCGGCC
TCATTACCCCATCACTCGACGAAATGGTTGATG back to topCoding sequence (CDS) from alignment at NODE_1977_length_7374_cov_5.226967:2..2534- >Gcaud1203.t1 ID=Gcaud1203.t1|Name=Gcaud1203.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2533bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:2..2534- (Gracilaria caudata M_176_S67 male) ATGGCTCAACCGTCCGAATTCGAGCCCGCTATATTTGCGGAGATTCGTGC CGTCCTCAATGAGCGTGTCATGTACATTGATGGTGCCATGGGTACCATGA TTCAACGCTACAAACTCAAGGAACACGATTTTCGTGGCGAGCGATACCTG AATCATTCCCATGACCTGCAAGGTAATAATGACATTCTGTCCATCACTCG TCCGGATATCATTCAAGAAATTCATGAACAATATCTTGAAGCAGGTTCGG ATTTCCTTGAAACGAATACCTTTTCGGGCACTCGCATTGCGCAAGCTGAT TACGAACTTGACACCGAGAAGGATGTGTATGATATAAACTTCGAGAGTGC CAAAGTCGCTCGTGCCGCATGTGACAAATATGAAGCCATGGACGGTAAGC GTCGTTATGTTTGTGGGGCAATTGGACCTACCAACCGAACTCTTAGTATT TCTCCTGATGTGAATGACCCGTCGTTTCGGAACATTACGTACATGGAGGT GGTCGATGCCTATTATGAACAGATACACGCCCTTGCCGAAGGCAAAGTGG ATGTTCTTCTCGTCGAGACAATTTTTGATACGCTCAATGCCAAGGCCGCT ATCTTTGCCATTGAAAAGTATTTTGATGACCATTCCGATCAACAACGAAT CCCAGTCTTTATTTCTGGTACTGTCGTAGACATGAGTGGCAGAACGCTTT CCGGTCAAACTACAGAAGGCTTTTGGACATCCGTCGAGCACGCCAAACCC ATAGCTGTTGGTCTCAACTGTGCGTTGGGTGCTAAGGATATGCGTCAATA CATCGAGCGTTTGGGACGTTGTTCTGATGCCTACATCATTTGCTACCCCA ACGCTGGTCTTCCGAACGCTATGGGAGGTTACGATCAGACTGGGCCGGAA ATGGCGGCGGAATTGGAACCGTTTTCGAAGGGTCGTCTCGTCAACATTGT AGGAGGATGCTGCGGTTCCACTCCTGCTCATATCAAGAGCATTGTTGAGA CCTTTAGCAAGGTTCCGCCGAAACCAGCACCCAAACCCCTTCCGAACATG ATGAGGCTCTCAGGTCTGGAACAATTTGTGTTGGACCCATCGCTTGTGCG ATTTGTCAATGTTGGTGAAAGGTGTAACGTTGCGGGTTCTATGTTTTTTA AAAAACAGGTCTTGGCTGGCAAGTACGAGAAGATGCAAGAAATTGCATTG AAACAAGTTGATAATGGTGCTCAAGTTCTGGATATAAACTTTGATGAGGG TTTGCTGGACTCGCATGCTGTGATGAGGAAGTTCTGCAATCTTTTGGCTA CCGAACCCGACGTGGCAAAAGTTCCGTTTATGATTGATTCCTCGAAGTTT GATGTCGTTGAACAGGGTCTACAATGTGTACAAGGCAAGTGCATTGTCAA CTCCATATCTCTCAAGGTCGGAGTGGACGAGTTTATTAGGCATGCCAAAC TCGTGAAGCGATATGGAGCAGCGGTTGTGGTCATGGCCTTTGATGAGGAA GGTCAGGCTGCGGGCCGTGATGACAAAGTCAGAATTTGTGCAAGGGCATA CAAGATCCTGGTCGAAGACGTCAAGTTTAATCCCAATGATATCATCTTCG ATCCGAATATTCTCACTGTTGCAACTGGTATCGAGGAGCATAACAACTAC GCGAAAGACTTCTTCGAGGCCACGAAGATTATCAAGGACACCCTGCCTCA CTGTCATATATCAGGTGGCGTTTCTAACATTTCCTTTTCGTTCCGTGGTA ACAATGCCCTTCGTGAGGCCATGCATTCGGCTTTCTTGTATCATGGTATC TCGAATGGAATGGATATGGGTATCGTGAACGCTGGTATCATTCCTGTATA CTCTGATATCCCTGAAACGCTGTTGAATCTCATCGAAGACGTGCTGCTCA ATCGTTCTACAGAGGCAACTGAAAATCTCTTGGAATTCTCACTCAGTATG GACAAGAAGAGTTCTGTGGGGGGCGGCAATGATGCAGACAAGAACAAGTG GCGCGTGTTGCCGGTCAAGGAAAGACTCTCACACGCTCTTGTGAAGGGCA TTGACGAGTTTGTTAATGGAGATGTTGAAGAAGCCCGTCAAGCTGCGGAC AAACCTCTTGACGTCATCGAAGGTCCTCTCATGGACGGCATGAACATTGT CGGTGATCTCTTCGGTGCTGGAAAGATGTTTCTGCCGCAGGTGATCAAAT CTGCTCGTGTCATGAAGAAGGCTGTAGCTGTACTAATTCCGTACATGGAA GCGGAAAAAGAAGCGAAAATTGCTGAGGCGAAAGCAAGGGGAGAAACCGC ATCAGAGGATGATATGTACGCTGGTACAATGGTAATTGCTACAGTGAAGG GTGACGTGCATGACATTGGAAAGAATATCGTGGCAGTTGTACTTGGCTGC AATAACTACAGGGTTGTTGACCTTGGCGTCATGTGTCCGTGCGACAAAAT CATTGACGCTGCCAGGGAACACAAGGCCAACATAATTGGTCTTTCCGGCC TCATTACCCCATCACTCGACGAAATGGTTGATG back to top
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