Gcaud1192.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1192.t1
Unique NameGcaud1192.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6022_length_1316_cov_3.965714contigNODE_6022_length_1316_cov_3.965714:2..1287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705292.1
Preferred namePID2
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K12873
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000003,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008289,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009888,GO:0009908,GO:0009914,GO:0009925,GO:0009926,GO:0009932,GO:0009958,GO:0009986,GO:0009987,GO:0010015,GO:0010033,GO:0010053,GO:0010054,GO:0010154,GO:0010540,GO:0010817,GO:0016020,GO:0016043,GO:0016049,GO:0016301,GO:0016310,GO:0016323,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021700,GO:0022414,GO:0022622,GO:0023052,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032878,GO:0032879,GO:0032989,GO:0035091,GO:0035556,GO:0036211,GO:0040007,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044459,GO:0044464,GO:0044706,GO:0045178,GO:0048316,GO:0048364,GO:0048366,GO:0048367,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048764,GO:0048765,GO:0048766,GO:0048767,GO:0048825,GO:0048827,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0060560,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071695,GO:0071704,GO:0071840,GO:0071944,GO:0080147,GO:0080167,GO:0090558,GO:0090567,GO:0090627,GO:0098590,GO:0099402,GO:0140096,GO:1901564,GO:1901981,GO:1905392,GO:2000012,GO:2000114
Evalue1.83e-105
EggNOG OGsKOG0610@1|root,KOG0610@2759|Eukaryota
Descriptionprotein serine/threonine kinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1192Gcaud1192Gracilaria caudata M_176_S67 malegeneNODE_6022_length_1316_cov_3.965714 2..1287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1192.t1Gcaud1192.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6022_length_1316_cov_3.965714 2..1287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1192.t1.CDS1Gcaud1192.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6022_length_1316_cov_3.965714 2..90 -
Gcaud1192.t1.CDS2Gcaud1192.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_6022_length_1316_cov_3.965714 381..1287 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1192.t1.exon1Gcaud1192.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6022_length_1316_cov_3.965714 2..90 -
Gcaud1192.t1.exon2Gcaud1192.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_6022_length_1316_cov_3.965714 381..1287 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1192.t1.intron1Gcaud1192.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_6022_length_1316_cov_3.965714 91..380 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1192.t1.start1Gcaud1192.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6022_length_1316_cov_3.965714 1285..1287 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1192.t1 ID=Gcaud1192.t1|Name=Gcaud1192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=332bp
MSGSAKNPQRQEQTPAPTSAPSTSASSRRQTDSNAHSDFRQRMNQSRTGG
HQAAPQPPNSATSTPSHGSAPSPYLMQSSPGGASSSDNGLTSRRSAFPPY
RDNTVLHTVSVPCSPAFPVKDDQIGPKHFSRLKLLGRGGIGQVFLVRLKN
TDKLYAMKVLSRDEMIQKNKVKRVMTEREILATANHPFIVTMYASFQTPD
RLCFVMDYCAGGEFFRVLQRQPKRRLKEDAVRFYAAEVILALEYLHHMGF
IYRDLKPENILMRENGHIALTDFDLSKQAHAVPPRVVKTQLSFQDKIRKS
LLKRTNSSLNNFEIVNSEPVLPYQTNSFVGTE
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spliced messenger RNA

>Gcaud1192.t1 ID=Gcaud1192.t1|Name=Gcaud1192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=996bp|location=Sequence derived from alignment at NODE_6022_length_1316_cov_3.965714:2..1287- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGTTCCGCTAAGAACCCACAGCGACAAGAGCAAACCCCCGCGCC
CACGTCCGCGCCCTCCACCTCCGCCTCCTCGAGGCGCCAGACCGACTCCA
ACGCCCACTCTGACTTCCGCCAGCGCATGAATCAGAGCCGCACAGGCGGC
CACCAGGCCGCACCGCAGCCGCCCAATTCCGCCACCTCCACCCCTTCGCA
CGGCTCAGCGCCCTCCCCGTACCTTATGCAATCCTCGCCAGGCGGCGCCT
CTTCCTCCGACAATGGCCTAACCAGCCGTCGATCCGCGTTTCCCCCCTAT
CGCGATAATACCGTCCTACACACAGTCTCAGTGCCCTGCTCCCCTGCCTT
CCCCGTCAAGGACGACCAAATCGGTCCCAAACACTTCAGCCGTCTCAAGC
TATTGGGTCGCGGTGGAATTGGTCAGGTGTTCCTTGTTCGACTCAAGAAT
ACCGACAAGCTCTATGCAATGAAGGTCTTGTCGCGCGACGAAATGATTCA
GAAGAACAAGGTCAAGCGGGTCATGACCGAACGTGAAATCCTCGCAACCG
CAAACCATCCCTTTATTGTTACAATGTACGCCTCCTTTCAGACCCCCGAC
CGCCTCTGCTTCGTGATGGACTACTGCGCGGGCGGTGAGTTCTTCCGCGT
GCTACAACGCCAACCCAAGCGCCGCCTCAAGGAGGATGCCGTGCGTTTCT
ATGCAGCGGAGGTCATTCTTGCCCTTGAGTACCTACATCACATGGGTTTT
ATCTATAGGGACCTCAAACCGGAAAACATCCTTATGCGAGAGAACGGCCA
TATAGCGCTAACCGACTTCGACCTTTCGAAGCAGGCGCACGCCGTTCCAC
CACGCGTTGTCAAGACCCAACTGTCATTCCAAGACAAAATCCGCAAGTCT
TTGTTAAAAAGAACAAATTCCTCACTCAACAACTTTGAAATCGTCAACTC
AGAACCGGTGCTTCCCTATCAAACCAATTCTTTTGTTGGAACAGAA
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protein sequence of Gcaud1192.t1

>Gcaud1192.t1 ID=Gcaud1192.t1|Name=Gcaud1192.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=332bp
MSGSAKNPQRQEQTPAPTSAPSTSASSRRQTDSNAHSDFRQRMNQSRTGG
HQAAPQPPNSATSTPSHGSAPSPYLMQSSPGGASSSDNGLTSRRSAFPPY
RDNTVLHTVSVPCSPAFPVKDDQIGPKHFSRLKLLGRGGIGQVFLVRLKN
TDKLYAMKVLSRDEMIQKNKVKRVMTEREILATANHPFIVTMYASFQTPD
RLCFVMDYCAGGEFFRVLQRQPKRRLKEDAVRFYAAEVILALEYLHHMGF
IYRDLKPENILMRENGHIALTDFDLSKQAHAVPPRVVKTQLSFQDKIRKS
LLKRTNSSLNNFEIVNSEPVLPYQTNSFVGTE
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mRNA from alignment at NODE_6022_length_1316_cov_3.965714:2..1287-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1192.t1 ID=Gcaud1192.t1|Name=Gcaud1192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1286bp|location=Sequence derived from alignment at NODE_6022_length_1316_cov_3.965714:2..1287- (Gracilaria caudata M_176_S67 male)
ATGAGCGGTTCCGCTAAGAACCCACAGCGACAAGAGCAAACCCCCGCGCC
CACGTCCGCGCCCTCCACCTCCGCCTCCTCGAGGCGCCAGACCGACTCCA
ACGCCCACTCTGACTTCCGCCAGCGCATGAATCAGAGCCGCACAGGCGGC
CACCAGGCCGCACCGCAGCCGCCCAATTCCGCCACCTCCACCCCTTCGCA
CGGCTCAGCGCCCTCCCCGTACCTTATGCAATCCTCGCCAGGCGGCGCCT
CTTCCTCCGACAATGGCCTAACCAGCCGTCGATCCGCGTTTCCCCCCTAT
CGCGATAATACCGTCCTACACACAGTCTCAGTGCCCTGCTCCCCTGCCTT
CCCCGTCAAGGACGACCAAATCGGTCCCAAACACTTCAGCCGTCTCAAGC
TATTGGGTCGCGGTGGAATTGGTCAGGTGTTCCTTGTTCGACTCAAGAAT
ACCGACAAGCTCTATGCAATGAAGGTCTTGTCGCGCGACGAAATGATTCA
GAAGAACAAGGTCAAGCGGGTCATGACCGAACGTGAAATCCTCGCAACCG
CAAACCATCCCTTTATTGTTACAATGTACGCCTCCTTTCAGACCCCCGAC
CGCCTCTGCTTCGTGATGGACTACTGCGCGGGCGGTGAGTTCTTCCGCGT
GCTACAACGCCAACCCAAGCGCCGCCTCAAGGAGGATGCCGTGCGTTTCT
ATGCAGCGGAGGTCATTCTTGCCCTTGAGTACCTACATCACATGGGTTTT
ATCTATAGGGACCTCAAACCGGAAAACATCCTTATGCGAGAGAACGGCCA
TATAGCGCTAACCGACTTCGACCTTTCGAAGCAGGCGCACGCCGTTCCAC
CACGCGTTGTCAAGACCCAACTGTCATTCCAAGACAAAATCCGCAAGTCT
TTGTTAAGTAAGTTCTCTGCTGATGTCAGGTTTAGCCACTTAGTCGCTAC
GCTGCGTACCATGCTTCTTCGCGCACAAGACGTCCATAACGCTTCATCAT
TTCCATCACGGAGCAGATGTTCACAGCAATGCATTTTATTTGTGCTACCT
TGTGCGTGATCCTGACGAGGTCCAACACCTTACGCATGCGGTCCCTGTGC
CTCTCGATTATGCATGCCACTAACTTGCTTTTTGTGTGTTCGTTGTGTCC
CTCTTCCCAAATTTCTTCACTGCGCCTCTGTCTTTCCTTACACACAGAAA
GAACAAATTCCTCACTCAACAACTTTGAAATCGTCAACTCAGAACCGGTG
CTTCCCTATCAAACCAATTCTTTTGTTGGAACAGAA
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Coding sequence (CDS) from alignment at NODE_6022_length_1316_cov_3.965714:2..1287-

>Gcaud1192.t1 ID=Gcaud1192.t1|Name=Gcaud1192.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=996bp|location=Sequence derived from alignment at NODE_6022_length_1316_cov_3.965714:2..1287- (Gracilaria caudata M_176_S67 male)
ATGAGCGGTTCCGCTAAGAACCCACAGCGACAAGAGCAAACCCCCGCGCC
CACGTCCGCGCCCTCCACCTCCGCCTCCTCGAGGCGCCAGACCGACTCCA
ACGCCCACTCTGACTTCCGCCAGCGCATGAATCAGAGCCGCACAGGCGGC
CACCAGGCCGCACCGCAGCCGCCCAATTCCGCCACCTCCACCCCTTCGCA
CGGCTCAGCGCCCTCCCCGTACCTTATGCAATCCTCGCCAGGCGGCGCCT
CTTCCTCCGACAATGGCCTAACCAGCCGTCGATCCGCGTTTCCCCCCTAT
CGCGATAATACCGTCCTACACACAGTCTCAGTGCCCTGCTCCCCTGCCTT
CCCCGTCAAGGACGACCAAATCGGTCCCAAACACTTCAGCCGTCTCAAGC
TATTGGGTCGCGGTGGAATTGGTCAGGTGTTCCTTGTTCGACTCAAGAAT
ACCGACAAGCTCTATGCAATGAAGGTCTTGTCGCGCGACGAAATGATTCA
GAAGAACAAGGTCAAGCGGGTCATGACCGAACGTGAAATCCTCGCAACCG
CAAACCATCCCTTTATTGTTACAATGTACGCCTCCTTTCAGACCCCCGAC
CGCCTCTGCTTCGTGATGGACTACTGCGCGGGCGGTGAGTTCTTCCGCGT
GCTACAACGCCAACCCAAGCGCCGCCTCAAGGAGGATGCCGTGCGTTTCT
ATGCAGCGGAGGTCATTCTTGCCCTTGAGTACCTACATCACATGGGTTTT
ATCTATAGGGACCTCAAACCGGAAAACATCCTTATGCGAGAGAACGGCCA
TATAGCGCTAACCGACTTCGACCTTTCGAAGCAGGCGCACGCCGTTCCAC
CACGCGTTGTCAAGACCCAACTGTCATTCCAAGACAAAATCCGCAAGTCT
TTGTTAAAAAGAACAAATTCCTCACTCAACAACTTTGAAATCGTCAACTC
AGAACCGGTGCTTCCCTATCAAACCAATTCTTTTGTTGGAACAGAA
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