Gcaud1190.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1190.t1
Unique Name	Gcaud1190.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	572

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1472_length_10382_cov_7.214751	contig	NODE_1472_length_10382_cov_7.214751:6366..8081 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1190	Gcaud1190	Gracilaria caudata M_176_S67 male	gene	NODE_1472_length_10382_cov_7.214751 6366..8081 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1190.t1.stop1	Gcaud1190.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1472_length_10382_cov_7.214751 6366..6368 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1190.t1.CDS1	Gcaud1190.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1472_length_10382_cov_7.214751 6366..8081 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1190.t1.exon1	Gcaud1190.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1472_length_10382_cov_7.214751 6366..8081 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1190.t1.start1	Gcaud1190.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1472_length_10382_cov_7.214751 8079..8081 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1190.t1	Gcaud1190.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1472_length_10382_cov_7.214751 6366..8081 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1472_length_10382_cov_7.214751:6366..8081-
coding sequence from alignment at NODE_1472_length_10382_cov_7.214751:6366..8081-

mRNA sequence

>Gcaud1190.t1 ID=Gcaud1190.t1|Name=Gcaud1190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=572bp
MLYEDVEEEIEAATVNEEESGSFRSLSESKNESESSSLSGDEETVPPSAD
KENQPLENSDIVPPPSSSNDNNSQRKRSLQSLLAEQEKYLPTSQLPCDLG
RGKRRKRTHSSLKAKKPRTREEAWNEMITAIILMEPDFFSSDEALLRNRS
KLERGRQVYKGLKANEENCEDLMTIYNIRFRSSEVLSGKPQAQYANVRCM
AGQIMRFSIACGLLAKEDGWKKGGMFECLLNFDSIQYFMRHFIIAAAPST
VATKANTLSLLVRYASSSFTDQEALNNLARVSDYLGKTASSAKKKHVTIT
RQRNAIDYVTKEDALLQPSDMTHALRLASNVLKDIFKTYCQDKAKKKSFA
KRLHKQEGLLEKWGINFLAAIVFAAGGQRPEAIARIEVPTDLELKSSKPT
QFGSFFSLRVRREKVERDAAFPVIIVPVMLQKFVKFYVNFIRRFIIRKSK
IEKQNEPWSLLLHTKDGRELSARCVSRSLRSFMRRIDKKFEYVTGRVVRY
SFATMMIQSYRNGKLGKDIPEDVFLDHLGRRMNTKPQQLKEAYLRIRRVD
FEEGCKIAMEHFFTMMNEGMD*

spliced messenger RNA

>Gcaud1190.t1 ID=Gcaud1190.t1|Name=Gcaud1190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at NODE_1472_length_10382_cov_7.214751:6366..8081- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTATGAGGACGTCGAAGAAGAAATCGAAGCGGCCACAGTTAACGA
GGAAGAAAGTGGTTCATTTCGTTCTCTTTCGGAATCCAAGAACGAAAGCG
AAAGTTCTTCTCTTTCAGGAGACGAAGAAACTGTGCCCCCAAGTGCCGAC
AAGGAGAACCAGCCTCTCGAAAATTCGGACATAGTGCCACCGCCTTCCTC
GTCAAACGACAATAATTCTCAAAGAAAGCGTAGTTTGCAGTCGCTTCTAG
CGGAGCAAGAAAAGTACTTACCGACGTCTCAATTGCCATGTGACCTTGGC
CGTGGCAAACGTCGAAAGCGAACTCATTCTTCACTGAAGGCCAAAAAGCC
GAGAACAAGGGAGGAGGCATGGAATGAAATGATTACCGCGATCATTTTGA
TGGAACCAGATTTCTTTTCAAGCGACGAAGCTTTGCTACGAAACAGATCG
AAGCTGGAAAGAGGCCGTCAGGTTTATAAGGGTTTAAAGGCAAACGAAGA
GAACTGTGAAGATTTGATGACAATTTACAACATTCGCTTTCGCAGTTCCG
AGGTTCTTTCTGGAAAGCCACAAGCGCAGTATGCAAATGTGAGATGCATG
GCGGGCCAGATCATGAGGTTTTCGATTGCATGCGGTTTGTTGGCAAAAGA
AGACGGCTGGAAGAAAGGAGGTATGTTTGAATGCCTCTTGAACTTTGACT
CTATCCAGTACTTCATGAGACATTTCATTATCGCTGCAGCCCCTTCGACA
GTAGCAACGAAGGCCAACACGTTAAGTCTTCTCGTTCGGTATGCCAGCTC
TTCGTTCACCGATCAGGAAGCGCTGAATAACTTGGCAAGAGTGTCGGACT
ACTTGGGAAAGACTGCTTCTTCTGCGAAGAAGAAGCACGTCACCATCACA
CGACAAAGAAATGCTATAGATTACGTCACGAAGGAAGACGCTTTGTTGCA
GCCGAGCGATATGACTCATGCTTTGCGATTGGCCAGTAATGTCCTTAAGG
ATATTTTCAAGACTTACTGTCAAGATAAGGCCAAAAAGAAGTCGTTTGCA
AAAAGGCTTCACAAACAGGAAGGTCTTCTCGAGAAGTGGGGTATCAACTT
CTTGGCTGCAATTGTGTTCGCCGCGGGGGGGCAGAGACCGGAAGCGATTG
CGAGAATTGAAGTGCCGACTGATTTGGAACTAAAGTCTTCGAAGCCAACG
CAATTTGGGTCCTTTTTTTCGCTGAGAGTTCGGCGAGAAAAGGTAGAGAG
GGATGCCGCTTTTCCGGTAATCATTGTTCCGGTCATGTTGCAGAAGTTCG
TGAAGTTTTATGTCAACTTCATTCGCAGGTTTATAATACGGAAGTCTAAA
ATAGAGAAACAGAATGAGCCCTGGAGTTTGCTTCTGCACACAAAGGATGG
TCGTGAGTTATCAGCTAGATGCGTAAGCCGGTCTCTGCGAAGCTTCATGA
GACGAATCGATAAGAAGTTCGAATACGTTACAGGACGTGTGGTGAGATAC
AGTTTTGCCACAATGATGATCCAGTCCTACCGAAATGGTAAGTTGGGAAA
GGATATACCAGAAGATGTCTTTCTTGATCATCTTGGACGTCGAATGAATA
CTAAGCCTCAGCAGCTAAAGGAGGCATATCTTCGAATTCGTCGTGTTGAT
TTCGAAGAGGGATGCAAGATAGCCATGGAGCACTTCTTTACGATGATGAA
CGAAGGAATGGACTAG

protein sequence of Gcaud1190.t1

>Gcaud1190.t1 ID=Gcaud1190.t1|Name=Gcaud1190.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=572bp
MLYEDVEEEIEAATVNEEESGSFRSLSESKNESESSSLSGDEETVPPSAD
KENQPLENSDIVPPPSSSNDNNSQRKRSLQSLLAEQEKYLPTSQLPCDLG
RGKRRKRTHSSLKAKKPRTREEAWNEMITAIILMEPDFFSSDEALLRNRS
KLERGRQVYKGLKANEENCEDLMTIYNIRFRSSEVLSGKPQAQYANVRCM
AGQIMRFSIACGLLAKEDGWKKGGMFECLLNFDSIQYFMRHFIIAAAPST
VATKANTLSLLVRYASSSFTDQEALNNLARVSDYLGKTASSAKKKHVTIT
RQRNAIDYVTKEDALLQPSDMTHALRLASNVLKDIFKTYCQDKAKKKSFA
KRLHKQEGLLEKWGINFLAAIVFAAGGQRPEAIARIEVPTDLELKSSKPT
QFGSFFSLRVRREKVERDAAFPVIIVPVMLQKFVKFYVNFIRRFIIRKSK
IEKQNEPWSLLLHTKDGRELSARCVSRSLRSFMRRIDKKFEYVTGRVVRY
SFATMMIQSYRNGKLGKDIPEDVFLDHLGRRMNTKPQQLKEAYLRIRRVD
FEEGCKIAMEHFFTMMNEGMD*

mRNA from alignment at NODE_1472_length_10382_cov_7.214751:6366..8081-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1190.t1 ID=Gcaud1190.t1|Name=Gcaud1190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at NODE_1472_length_10382_cov_7.214751:6366..8081- (Gracilaria caudata M_176_S67 male)
ATGTTGTATGAGGACGTCGAAGAAGAAATCGAAGCGGCCACAGTTAACGA
GGAAGAAAGTGGTTCATTTCGTTCTCTTTCGGAATCCAAGAACGAAAGCG
AAAGTTCTTCTCTTTCAGGAGACGAAGAAACTGTGCCCCCAAGTGCCGAC
AAGGAGAACCAGCCTCTCGAAAATTCGGACATAGTGCCACCGCCTTCCTC
GTCAAACGACAATAATTCTCAAAGAAAGCGTAGTTTGCAGTCGCTTCTAG
CGGAGCAAGAAAAGTACTTACCGACGTCTCAATTGCCATGTGACCTTGGC
CGTGGCAAACGTCGAAAGCGAACTCATTCTTCACTGAAGGCCAAAAAGCC
GAGAACAAGGGAGGAGGCATGGAATGAAATGATTACCGCGATCATTTTGA
TGGAACCAGATTTCTTTTCAAGCGACGAAGCTTTGCTACGAAACAGATCG
AAGCTGGAAAGAGGCCGTCAGGTTTATAAGGGTTTAAAGGCAAACGAAGA
GAACTGTGAAGATTTGATGACAATTTACAACATTCGCTTTCGCAGTTCCG
AGGTTCTTTCTGGAAAGCCACAAGCGCAGTATGCAAATGTGAGATGCATG
GCGGGCCAGATCATGAGGTTTTCGATTGCATGCGGTTTGTTGGCAAAAGA
AGACGGCTGGAAGAAAGGAGGTATGTTTGAATGCCTCTTGAACTTTGACT
CTATCCAGTACTTCATGAGACATTTCATTATCGCTGCAGCCCCTTCGACA
GTAGCAACGAAGGCCAACACGTTAAGTCTTCTCGTTCGGTATGCCAGCTC
TTCGTTCACCGATCAGGAAGCGCTGAATAACTTGGCAAGAGTGTCGGACT
ACTTGGGAAAGACTGCTTCTTCTGCGAAGAAGAAGCACGTCACCATCACA
CGACAAAGAAATGCTATAGATTACGTCACGAAGGAAGACGCTTTGTTGCA
GCCGAGCGATATGACTCATGCTTTGCGATTGGCCAGTAATGTCCTTAAGG
ATATTTTCAAGACTTACTGTCAAGATAAGGCCAAAAAGAAGTCGTTTGCA
AAAAGGCTTCACAAACAGGAAGGTCTTCTCGAGAAGTGGGGTATCAACTT
CTTGGCTGCAATTGTGTTCGCCGCGGGGGGGCAGAGACCGGAAGCGATTG
CGAGAATTGAAGTGCCGACTGATTTGGAACTAAAGTCTTCGAAGCCAACG
CAATTTGGGTCCTTTTTTTCGCTGAGAGTTCGGCGAGAAAAGGTAGAGAG
GGATGCCGCTTTTCCGGTAATCATTGTTCCGGTCATGTTGCAGAAGTTCG
TGAAGTTTTATGTCAACTTCATTCGCAGGTTTATAATACGGAAGTCTAAA
ATAGAGAAACAGAATGAGCCCTGGAGTTTGCTTCTGCACACAAAGGATGG
TCGTGAGTTATCAGCTAGATGCGTAAGCCGGTCTCTGCGAAGCTTCATGA
GACGAATCGATAAGAAGTTCGAATACGTTACAGGACGTGTGGTGAGATAC
AGTTTTGCCACAATGATGATCCAGTCCTACCGAAATGGTAAGTTGGGAAA
GGATATACCAGAAGATGTCTTTCTTGATCATCTTGGACGTCGAATGAATA
CTAAGCCTCAGCAGCTAAAGGAGGCATATCTTCGAATTCGTCGTGTTGAT
TTCGAAGAGGGATGCAAGATAGCCATGGAGCACTTCTTTACGATGATGAA
CGAAGGAATGGACTAG

Coding sequence (CDS) from alignment at NODE_1472_length_10382_cov_7.214751:6366..8081-

>Gcaud1190.t1 ID=Gcaud1190.t1|Name=Gcaud1190.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1716bp|location=Sequence derived from alignment at NODE_1472_length_10382_cov_7.214751:6366..8081- (Gracilaria caudata M_176_S67 male)
ATGTTGTATGAGGACGTCGAAGAAGAAATCGAAGCGGCCACAGTTAACGA
GGAAGAAAGTGGTTCATTTCGTTCTCTTTCGGAATCCAAGAACGAAAGCG
AAAGTTCTTCTCTTTCAGGAGACGAAGAAACTGTGCCCCCAAGTGCCGAC
AAGGAGAACCAGCCTCTCGAAAATTCGGACATAGTGCCACCGCCTTCCTC
GTCAAACGACAATAATTCTCAAAGAAAGCGTAGTTTGCAGTCGCTTCTAG
CGGAGCAAGAAAAGTACTTACCGACGTCTCAATTGCCATGTGACCTTGGC
CGTGGCAAACGTCGAAAGCGAACTCATTCTTCACTGAAGGCCAAAAAGCC
GAGAACAAGGGAGGAGGCATGGAATGAAATGATTACCGCGATCATTTTGA
TGGAACCAGATTTCTTTTCAAGCGACGAAGCTTTGCTACGAAACAGATCG
AAGCTGGAAAGAGGCCGTCAGGTTTATAAGGGTTTAAAGGCAAACGAAGA
GAACTGTGAAGATTTGATGACAATTTACAACATTCGCTTTCGCAGTTCCG
AGGTTCTTTCTGGAAAGCCACAAGCGCAGTATGCAAATGTGAGATGCATG
GCGGGCCAGATCATGAGGTTTTCGATTGCATGCGGTTTGTTGGCAAAAGA
AGACGGCTGGAAGAAAGGAGGTATGTTTGAATGCCTCTTGAACTTTGACT
CTATCCAGTACTTCATGAGACATTTCATTATCGCTGCAGCCCCTTCGACA
GTAGCAACGAAGGCCAACACGTTAAGTCTTCTCGTTCGGTATGCCAGCTC
TTCGTTCACCGATCAGGAAGCGCTGAATAACTTGGCAAGAGTGTCGGACT
ACTTGGGAAAGACTGCTTCTTCTGCGAAGAAGAAGCACGTCACCATCACA
CGACAAAGAAATGCTATAGATTACGTCACGAAGGAAGACGCTTTGTTGCA
GCCGAGCGATATGACTCATGCTTTGCGATTGGCCAGTAATGTCCTTAAGG
ATATTTTCAAGACTTACTGTCAAGATAAGGCCAAAAAGAAGTCGTTTGCA
AAAAGGCTTCACAAACAGGAAGGTCTTCTCGAGAAGTGGGGTATCAACTT
CTTGGCTGCAATTGTGTTCGCCGCGGGGGGGCAGAGACCGGAAGCGATTG
CGAGAATTGAAGTGCCGACTGATTTGGAACTAAAGTCTTCGAAGCCAACG
CAATTTGGGTCCTTTTTTTCGCTGAGAGTTCGGCGAGAAAAGGTAGAGAG
GGATGCCGCTTTTCCGGTAATCATTGTTCCGGTCATGTTGCAGAAGTTCG
TGAAGTTTTATGTCAACTTCATTCGCAGGTTTATAATACGGAAGTCTAAA
ATAGAGAAACAGAATGAGCCCTGGAGTTTGCTTCTGCACACAAAGGATGG
TCGTGAGTTATCAGCTAGATGCGTAAGCCGGTCTCTGCGAAGCTTCATGA
GACGAATCGATAAGAAGTTCGAATACGTTACAGGACGTGTGGTGAGATAC
AGTTTTGCCACAATGATGATCCAGTCCTACCGAAATGGTAAGTTGGGAAA
GGATATACCAGAAGATGTCTTTCTTGATCATCTTGGACGTCGAATGAATA
CTAAGCCTCAGCAGCTAAAGGAGGCATATCTTCGAATTCGTCGTGTTGAT
TTCGAAGAGGGATGCAAGATAGCCATGGAGCACTTCTTTACGATGATGAA
CGAAGGAATGGACTAG