Gcaud1189.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1189.t1
Unique Name	Gcaud1189.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	519

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_376_length_27957_cov_4.369698	contig	NODE_376_length_27957_cov_4.369698:26298..27854 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703545.1
PFAMs	Branch
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG Reaction	R05925,R06189
KEGG Pathway	ko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG Module	M00057
GOs	GO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue	3.57e-59
EggNOG OGs	KOG0799@1\|root,KOG0799@2759\|Eukaryota
EC	2.4.1.150,2.4.2.26
Description	acetylglucosaminyltransferase activity
COG category	O
CAZy	GT14
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1189	Gcaud1189	Gracilaria caudata M_176_S67 male	gene	NODE_376_length_27957_cov_4.369698 26298..27854 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1189.t1.start1	Gcaud1189.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_376_length_27957_cov_4.369698 26298..26300 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1189.t1.CDS1	Gcaud1189.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_376_length_27957_cov_4.369698 26298..27854 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1189.t1.exon1	Gcaud1189.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_376_length_27957_cov_4.369698 26298..27854 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1189.t1.stop1	Gcaud1189.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_376_length_27957_cov_4.369698 27852..27854 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1189.t1	Gcaud1189.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_376_length_27957_cov_4.369698 26298..27854 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_376_length_27957_cov_4.369698:26298..27854+
coding sequence from alignment at NODE_376_length_27957_cov_4.369698:26298..27854+

mRNA sequence

>Gcaud1189.t1 ID=Gcaud1189.t1|Name=Gcaud1189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp
MRKPSLASPELSSLPRIRRLRPRARARRKRFVRPSAQFVTVLASFIILCA
FVAISRASLFESQLVSLLDNAAAAAPPSSSSSRHGALHGASSNVSLPSSA
RARSEEVRPRPDDVSSDDVSTVIAADGSVFVLNHRALTIEQSSHTHQLSA
TQMGRVVGELEVNIAFFMQISDANMPFLPRLLTILWHPSNVYLIHFDKKI
SSQRTLPIRESLQRNQKFRNVHVMPSEHITYMGVSMLLNTLSAIEYLLQL
RQQWHYFINLSGSDYPLVNIVNMRRILGQPHIVGRNITFLQLAPNTQFWQ
RTKQSRFDNIFYDTSLGMSETRNHHLLDTKKEHPVRNQLGVHFLQSEAWL
ILHRSFAHFSVRSAFARKLLILLSMMKDPEEHFFAMLAWNDPHFNSTLAH
HALRGIYWKLNGTPSGQHPYYIDEQLPDGSLPFWDPGVIKSRCFFARKFR
HAQSALLDRIDRLMSGTHRDADMRAVENSLIAVHEFVTCLANRDPLWDKI
LWHPPCNYTEYRSSWKKR*

spliced messenger RNA

>Gcaud1189.t1 ID=Gcaud1189.t1|Name=Gcaud1189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:26298..27854+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAAGCCGTCGTTGGCGTCACCCGAGCTGTCGTCGCTGCCGCGCAT
CCGTCGCCTACGCCCGCGCGCACGTGCGCGGCGCAAGCGCTTTGTGCGCC
CGTCCGCGCAGTTTGTGACCGTGCTGGCGTCCTTCATCATTCTGTGCGCG
TTTGTGGCCATCTCGCGAGCGTCGCTGTTCGAGTCGCAGCTCGTCTCGCT
GCTGGACAACGCTGCGGCGGCGGCGCCGCCGTCGTCGTCGTCGTCACGGC
ACGGCGCTTTGCACGGCGCGTCGTCCAACGTGTCGCTGCCGTCGTCGGCG
CGCGCGCGTTCGGAGGAGGTGAGGCCGAGGCCGGACGACGTGAGCTCGGA
CGATGTGAGCACGGTGATTGCGGCCGATGGCTCGGTGTTTGTGCTGAATC
ATCGCGCGCTTACCATTGAGCAATCGTCACACACTCATCAGCTGTCCGCC
ACGCAAATGGGGCGTGTTGTGGGTGAGCTCGAGGTGAACATTGCCTTCTT
CATGCAGATCTCCGACGCCAACATGCCCTTCTTACCGCGCCTGCTTACTA
TTCTGTGGCACCCGTCCAACGTGTACCTCATCCACTTTGACAAGAAGATC
AGCTCGCAGCGCACGTTGCCCATCCGCGAGTCACTGCAGCGCAATCAAAA
GTTTCGCAACGTGCACGTGATGCCGTCGGAGCACATCACGTACATGGGCG
TCTCCATGCTGCTCAACACGCTGTCCGCCATCGAGTACCTGCTGCAACTG
CGTCAGCAATGGCACTATTTCATAAACCTGTCTGGCTCCGACTACCCGCT
GGTCAACATTGTGAACATGCGCCGCATTCTCGGCCAGCCGCACATTGTGG
GAAGAAACATCACCTTTCTGCAACTGGCGCCCAACACCCAATTTTGGCAG
CGCACCAAGCAGTCGCGCTTCGACAACATCTTCTACGACACCTCGCTGGG
CATGAGTGAAACTCGCAACCACCACTTACTCGACACCAAAAAGGAACATC
CCGTGCGCAACCAGCTCGGCGTGCACTTCCTGCAATCGGAGGCGTGGCTC
ATCTTGCACCGTTCGTTCGCACATTTTTCGGTGCGCAGTGCATTTGCCAG
AAAGCTGTTGATCCTGCTGTCCATGATGAAGGACCCGGAGGAGCATTTCT
TCGCCATGCTCGCGTGGAACGACCCGCACTTCAACAGCACGTTGGCGCAC
CACGCGTTGCGAGGCATCTATTGGAAGCTCAACGGCACGCCAAGCGGGCA
GCATCCGTATTACATTGACGAGCAACTGCCCGACGGCTCGCTGCCGTTTT
GGGACCCCGGCGTGATCAAATCGCGCTGCTTCTTTGCGCGCAAGTTCCGA
CACGCGCAGAGCGCGCTGCTGGACCGCATTGACCGGCTCATGAGCGGCAC
GCACCGCGACGCTGACATGCGCGCGGTGGAAAACTCGCTGATCGCGGTGC
ACGAGTTTGTGACGTGTTTGGCGAATCGCGACCCGCTGTGGGACAAGATT
CTGTGGCATCCGCCGTGCAACTACACGGAGTATCGCTCGTCGTGGAAGAA
GAGGTAA

protein sequence of Gcaud1189.t1

>Gcaud1189.t1 ID=Gcaud1189.t1|Name=Gcaud1189.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=519bp
MRKPSLASPELSSLPRIRRLRPRARARRKRFVRPSAQFVTVLASFIILCA
FVAISRASLFESQLVSLLDNAAAAAPPSSSSSRHGALHGASSNVSLPSSA
RARSEEVRPRPDDVSSDDVSTVIAADGSVFVLNHRALTIEQSSHTHQLSA
TQMGRVVGELEVNIAFFMQISDANMPFLPRLLTILWHPSNVYLIHFDKKI
SSQRTLPIRESLQRNQKFRNVHVMPSEHITYMGVSMLLNTLSAIEYLLQL
RQQWHYFINLSGSDYPLVNIVNMRRILGQPHIVGRNITFLQLAPNTQFWQ
RTKQSRFDNIFYDTSLGMSETRNHHLLDTKKEHPVRNQLGVHFLQSEAWL
ILHRSFAHFSVRSAFARKLLILLSMMKDPEEHFFAMLAWNDPHFNSTLAH
HALRGIYWKLNGTPSGQHPYYIDEQLPDGSLPFWDPGVIKSRCFFARKFR
HAQSALLDRIDRLMSGTHRDADMRAVENSLIAVHEFVTCLANRDPLWDKI
LWHPPCNYTEYRSSWKKR*

mRNA from alignment at NODE_376_length_27957_cov_4.369698:26298..27854+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1189.t1 ID=Gcaud1189.t1|Name=Gcaud1189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:26298..27854+ (Gracilaria caudata M_176_S67 male)
ATGCGCAAGCCGTCGTTGGCGTCACCCGAGCTGTCGTCGCTGCCGCGCAT
CCGTCGCCTACGCCCGCGCGCACGTGCGCGGCGCAAGCGCTTTGTGCGCC
CGTCCGCGCAGTTTGTGACCGTGCTGGCGTCCTTCATCATTCTGTGCGCG
TTTGTGGCCATCTCGCGAGCGTCGCTGTTCGAGTCGCAGCTCGTCTCGCT
GCTGGACAACGCTGCGGCGGCGGCGCCGCCGTCGTCGTCGTCGTCACGGC
ACGGCGCTTTGCACGGCGCGTCGTCCAACGTGTCGCTGCCGTCGTCGGCG
CGCGCGCGTTCGGAGGAGGTGAGGCCGAGGCCGGACGACGTGAGCTCGGA
CGATGTGAGCACGGTGATTGCGGCCGATGGCTCGGTGTTTGTGCTGAATC
ATCGCGCGCTTACCATTGAGCAATCGTCACACACTCATCAGCTGTCCGCC
ACGCAAATGGGGCGTGTTGTGGGTGAGCTCGAGGTGAACATTGCCTTCTT
CATGCAGATCTCCGACGCCAACATGCCCTTCTTACCGCGCCTGCTTACTA
TTCTGTGGCACCCGTCCAACGTGTACCTCATCCACTTTGACAAGAAGATC
AGCTCGCAGCGCACGTTGCCCATCCGCGAGTCACTGCAGCGCAATCAAAA
GTTTCGCAACGTGCACGTGATGCCGTCGGAGCACATCACGTACATGGGCG
TCTCCATGCTGCTCAACACGCTGTCCGCCATCGAGTACCTGCTGCAACTG
CGTCAGCAATGGCACTATTTCATAAACCTGTCTGGCTCCGACTACCCGCT
GGTCAACATTGTGAACATGCGCCGCATTCTCGGCCAGCCGCACATTGTGG
GAAGAAACATCACCTTTCTGCAACTGGCGCCCAACACCCAATTTTGGCAG
CGCACCAAGCAGTCGCGCTTCGACAACATCTTCTACGACACCTCGCTGGG
CATGAGTGAAACTCGCAACCACCACTTACTCGACACCAAAAAGGAACATC
CCGTGCGCAACCAGCTCGGCGTGCACTTCCTGCAATCGGAGGCGTGGCTC
ATCTTGCACCGTTCGTTCGCACATTTTTCGGTGCGCAGTGCATTTGCCAG
AAAGCTGTTGATCCTGCTGTCCATGATGAAGGACCCGGAGGAGCATTTCT
TCGCCATGCTCGCGTGGAACGACCCGCACTTCAACAGCACGTTGGCGCAC
CACGCGTTGCGAGGCATCTATTGGAAGCTCAACGGCACGCCAAGCGGGCA
GCATCCGTATTACATTGACGAGCAACTGCCCGACGGCTCGCTGCCGTTTT
GGGACCCCGGCGTGATCAAATCGCGCTGCTTCTTTGCGCGCAAGTTCCGA
CACGCGCAGAGCGCGCTGCTGGACCGCATTGACCGGCTCATGAGCGGCAC
GCACCGCGACGCTGACATGCGCGCGGTGGAAAACTCGCTGATCGCGGTGC
ACGAGTTTGTGACGTGTTTGGCGAATCGCGACCCGCTGTGGGACAAGATT
CTGTGGCATCCGCCGTGCAACTACACGGAGTATCGCTCGTCGTGGAAGAA
GAGGTAA

Coding sequence (CDS) from alignment at NODE_376_length_27957_cov_4.369698:26298..27854+

>Gcaud1189.t1 ID=Gcaud1189.t1|Name=Gcaud1189.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1557bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:26298..27854+ (Gracilaria caudata M_176_S67 male)
ATGCGCAAGCCGTCGTTGGCGTCACCCGAGCTGTCGTCGCTGCCGCGCAT
CCGTCGCCTACGCCCGCGCGCACGTGCGCGGCGCAAGCGCTTTGTGCGCC
CGTCCGCGCAGTTTGTGACCGTGCTGGCGTCCTTCATCATTCTGTGCGCG
TTTGTGGCCATCTCGCGAGCGTCGCTGTTCGAGTCGCAGCTCGTCTCGCT
GCTGGACAACGCTGCGGCGGCGGCGCCGCCGTCGTCGTCGTCGTCACGGC
ACGGCGCTTTGCACGGCGCGTCGTCCAACGTGTCGCTGCCGTCGTCGGCG
CGCGCGCGTTCGGAGGAGGTGAGGCCGAGGCCGGACGACGTGAGCTCGGA
CGATGTGAGCACGGTGATTGCGGCCGATGGCTCGGTGTTTGTGCTGAATC
ATCGCGCGCTTACCATTGAGCAATCGTCACACACTCATCAGCTGTCCGCC
ACGCAAATGGGGCGTGTTGTGGGTGAGCTCGAGGTGAACATTGCCTTCTT
CATGCAGATCTCCGACGCCAACATGCCCTTCTTACCGCGCCTGCTTACTA
TTCTGTGGCACCCGTCCAACGTGTACCTCATCCACTTTGACAAGAAGATC
AGCTCGCAGCGCACGTTGCCCATCCGCGAGTCACTGCAGCGCAATCAAAA
GTTTCGCAACGTGCACGTGATGCCGTCGGAGCACATCACGTACATGGGCG
TCTCCATGCTGCTCAACACGCTGTCCGCCATCGAGTACCTGCTGCAACTG
CGTCAGCAATGGCACTATTTCATAAACCTGTCTGGCTCCGACTACCCGCT
GGTCAACATTGTGAACATGCGCCGCATTCTCGGCCAGCCGCACATTGTGG
GAAGAAACATCACCTTTCTGCAACTGGCGCCCAACACCCAATTTTGGCAG
CGCACCAAGCAGTCGCGCTTCGACAACATCTTCTACGACACCTCGCTGGG
CATGAGTGAAACTCGCAACCACCACTTACTCGACACCAAAAAGGAACATC
CCGTGCGCAACCAGCTCGGCGTGCACTTCCTGCAATCGGAGGCGTGGCTC
ATCTTGCACCGTTCGTTCGCACATTTTTCGGTGCGCAGTGCATTTGCCAG
AAAGCTGTTGATCCTGCTGTCCATGATGAAGGACCCGGAGGAGCATTTCT
TCGCCATGCTCGCGTGGAACGACCCGCACTTCAACAGCACGTTGGCGCAC
CACGCGTTGCGAGGCATCTATTGGAAGCTCAACGGCACGCCAAGCGGGCA
GCATCCGTATTACATTGACGAGCAACTGCCCGACGGCTCGCTGCCGTTTT
GGGACCCCGGCGTGATCAAATCGCGCTGCTTCTTTGCGCGCAAGTTCCGA
CACGCGCAGAGCGCGCTGCTGGACCGCATTGACCGGCTCATGAGCGGCAC
GCACCGCGACGCTGACATGCGCGCGGTGGAAAACTCGCTGATCGCGGTGC
ACGAGTTTGTGACGTGTTTGGCGAATCGCGACCCGCTGTGGGACAAGATT
CTGTGGCATCCGCCGTGCAACTACACGGAGTATCGCTCGTCGTGGAAGAA
GAGGTAA