Gcaud1188.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1188.t1
Unique NameGcaud1188.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_376_length_27957_cov_4.369698contigNODE_376_length_27957_cov_4.369698:24532..25587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM267CT
PFAMsEpimerase,NAD_binding_10,NmrA,RmlD_sub_bind
Max annot lvl2759|Eukaryota
KEGG rclassRC00299
KEGG koko:K01593,ko:K03953
KEGG TC3.D.1.6
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00190,ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04714,ko04723,ko04726,ko04728,ko04932,ko05010,ko05012,ko05016,ko05030,ko05031,ko05034,map00190,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04714,map04723,map04726,map04728,map04932,map05010,map05012,map05016,map05030,map05031,map05034
KEGG ModuleM00037,M00042,M00146
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016020,GO:0016491,GO:0016651,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0070469,GO:0071704,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663,GO:1902494,GO:1990204
Evalue6.55e-108
EggNOG OGsCOG0702@1|root,KOG2865@2759|Eukaryota
EC4.1.1.105,4.1.1.28
DescriptionNADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9
COG categoryGM
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1188Gcaud1188Gracilaria caudata M_176_S67 malegeneNODE_376_length_27957_cov_4.369698 24532..25587 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1188.t1.stop1Gcaud1188.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_376_length_27957_cov_4.369698 24532..24534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1188.t1.CDS1Gcaud1188.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_376_length_27957_cov_4.369698 24532..25587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1188.t1.exon1Gcaud1188.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_376_length_27957_cov_4.369698 24532..25587 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1188.t1.start1Gcaud1188.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_376_length_27957_cov_4.369698 25585..25587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1188.t1Gcaud1188.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_376_length_27957_cov_4.369698 24532..25587 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1188.t1 ID=Gcaud1188.t1|Name=Gcaud1188.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=352bp
MASSARLIAAASLAARGSGGRSSVSGVSATVFGATGFLGRYVVNQLGRIG
SQLTVPFRGDELNARHLKVMGDLGQVVPFAFELRDHASVREAMRGSSVVV
NLMGKNFATLNYSLEDVHVHGVATLAHIAREERVSHFVHVSTAPPLRRCR
STWLQTKQEGEQVLRELLPHATIVRPADMFGAEDRLLTRMATNLVKWPLI
ALADDGESRVQPVWVNDVASVVAAAVRDPDKFAGKTLELGGPDVVSVREL
YDFVGESTKRSARFLPVPARAMHFGMRFAGMRLPLVNPDPVYTQEQVMVE
TAERVLDGAKPRVLRFEQLDAAPISVFSDLGHEILRRFRRGGDRSSLFHV
D*
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spliced messenger RNA

>Gcaud1188.t1 ID=Gcaud1188.t1|Name=Gcaud1188.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:24532..25587- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGCAGCGCGCGGCTGATAGCGGCCGCGTCGCTCGCCGCGCGCGG
CAGCGGCGGGCGATCGTCCGTGAGCGGCGTGTCCGCCACCGTGTTCGGCG
CCACCGGCTTTCTGGGGCGCTACGTGGTGAATCAGCTGGGGCGCATCGGC
TCGCAGCTCACGGTGCCGTTCCGCGGCGACGAGTTGAACGCGCGTCACCT
CAAGGTGATGGGCGATCTGGGGCAGGTGGTGCCGTTCGCGTTCGAGCTGC
GCGACCACGCGTCGGTGCGAGAGGCGATGCGCGGCAGCTCGGTGGTGGTG
AACCTGATGGGCAAGAACTTTGCCACGCTCAATTACTCGCTGGAAGACGT
GCATGTGCACGGCGTGGCTACGCTGGCGCACATTGCGCGCGAGGAGCGCG
TGTCGCACTTTGTGCACGTTTCTACGGCGCCGCCGCTGCGGCGCTGCCGC
AGCACGTGGCTGCAAACCAAGCAGGAGGGCGAACAGGTGCTGAGGGAGCT
GCTGCCGCACGCCACCATTGTGCGCCCGGCGGATATGTTTGGCGCGGAGG
ATCGACTGCTCACGCGCATGGCCACCAACCTGGTCAAGTGGCCGCTGATT
GCGCTGGCGGACGACGGCGAGTCGCGCGTGCAGCCGGTGTGGGTGAATGA
CGTGGCCAGCGTGGTGGCGGCCGCGGTGAGGGACCCGGACAAGTTTGCGG
GCAAGACGCTGGAACTGGGCGGGCCGGACGTGGTGTCCGTGCGCGAGCTT
TACGATTTCGTGGGCGAGTCGACGAAGCGCTCGGCGCGCTTTTTGCCCGT
GCCGGCGAGGGCGATGCACTTTGGCATGCGCTTTGCGGGCATGAGGCTGC
CGCTTGTGAACCCGGACCCGGTGTACACGCAGGAGCAGGTGATGGTGGAG
ACGGCTGAGCGCGTGTTGGACGGCGCGAAGCCGCGCGTGTTGCGCTTTGA
GCAGCTCGATGCGGCGCCCATCAGCGTGTTCTCGGACCTCGGGCACGAGA
TTCTGCGCCGCTTCCGTCGCGGCGGCGACCGCAGCAGTCTGTTCCACGTG
GACTAA
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protein sequence of Gcaud1188.t1

>Gcaud1188.t1 ID=Gcaud1188.t1|Name=Gcaud1188.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=352bp
MASSARLIAAASLAARGSGGRSSVSGVSATVFGATGFLGRYVVNQLGRIG
SQLTVPFRGDELNARHLKVMGDLGQVVPFAFELRDHASVREAMRGSSVVV
NLMGKNFATLNYSLEDVHVHGVATLAHIAREERVSHFVHVSTAPPLRRCR
STWLQTKQEGEQVLRELLPHATIVRPADMFGAEDRLLTRMATNLVKWPLI
ALADDGESRVQPVWVNDVASVVAAAVRDPDKFAGKTLELGGPDVVSVREL
YDFVGESTKRSARFLPVPARAMHFGMRFAGMRLPLVNPDPVYTQEQVMVE
TAERVLDGAKPRVLRFEQLDAAPISVFSDLGHEILRRFRRGGDRSSLFHV
D*
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mRNA from alignment at NODE_376_length_27957_cov_4.369698:24532..25587-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1188.t1 ID=Gcaud1188.t1|Name=Gcaud1188.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:24532..25587- (Gracilaria caudata M_176_S67 male)
ATGGCAAGCAGCGCGCGGCTGATAGCGGCCGCGTCGCTCGCCGCGCGCGG
CAGCGGCGGGCGATCGTCCGTGAGCGGCGTGTCCGCCACCGTGTTCGGCG
CCACCGGCTTTCTGGGGCGCTACGTGGTGAATCAGCTGGGGCGCATCGGC
TCGCAGCTCACGGTGCCGTTCCGCGGCGACGAGTTGAACGCGCGTCACCT
CAAGGTGATGGGCGATCTGGGGCAGGTGGTGCCGTTCGCGTTCGAGCTGC
GCGACCACGCGTCGGTGCGAGAGGCGATGCGCGGCAGCTCGGTGGTGGTG
AACCTGATGGGCAAGAACTTTGCCACGCTCAATTACTCGCTGGAAGACGT
GCATGTGCACGGCGTGGCTACGCTGGCGCACATTGCGCGCGAGGAGCGCG
TGTCGCACTTTGTGCACGTTTCTACGGCGCCGCCGCTGCGGCGCTGCCGC
AGCACGTGGCTGCAAACCAAGCAGGAGGGCGAACAGGTGCTGAGGGAGCT
GCTGCCGCACGCCACCATTGTGCGCCCGGCGGATATGTTTGGCGCGGAGG
ATCGACTGCTCACGCGCATGGCCACCAACCTGGTCAAGTGGCCGCTGATT
GCGCTGGCGGACGACGGCGAGTCGCGCGTGCAGCCGGTGTGGGTGAATGA
CGTGGCCAGCGTGGTGGCGGCCGCGGTGAGGGACCCGGACAAGTTTGCGG
GCAAGACGCTGGAACTGGGCGGGCCGGACGTGGTGTCCGTGCGCGAGCTT
TACGATTTCGTGGGCGAGTCGACGAAGCGCTCGGCGCGCTTTTTGCCCGT
GCCGGCGAGGGCGATGCACTTTGGCATGCGCTTTGCGGGCATGAGGCTGC
CGCTTGTGAACCCGGACCCGGTGTACACGCAGGAGCAGGTGATGGTGGAG
ACGGCTGAGCGCGTGTTGGACGGCGCGAAGCCGCGCGTGTTGCGCTTTGA
GCAGCTCGATGCGGCGCCCATCAGCGTGTTCTCGGACCTCGGGCACGAGA
TTCTGCGCCGCTTCCGTCGCGGCGGCGACCGCAGCAGTCTGTTCCACGTG
GACTAA
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Coding sequence (CDS) from alignment at NODE_376_length_27957_cov_4.369698:24532..25587-

>Gcaud1188.t1 ID=Gcaud1188.t1|Name=Gcaud1188.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1056bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:24532..25587- (Gracilaria caudata M_176_S67 male)
ATGGCAAGCAGCGCGCGGCTGATAGCGGCCGCGTCGCTCGCCGCGCGCGG
CAGCGGCGGGCGATCGTCCGTGAGCGGCGTGTCCGCCACCGTGTTCGGCG
CCACCGGCTTTCTGGGGCGCTACGTGGTGAATCAGCTGGGGCGCATCGGC
TCGCAGCTCACGGTGCCGTTCCGCGGCGACGAGTTGAACGCGCGTCACCT
CAAGGTGATGGGCGATCTGGGGCAGGTGGTGCCGTTCGCGTTCGAGCTGC
GCGACCACGCGTCGGTGCGAGAGGCGATGCGCGGCAGCTCGGTGGTGGTG
AACCTGATGGGCAAGAACTTTGCCACGCTCAATTACTCGCTGGAAGACGT
GCATGTGCACGGCGTGGCTACGCTGGCGCACATTGCGCGCGAGGAGCGCG
TGTCGCACTTTGTGCACGTTTCTACGGCGCCGCCGCTGCGGCGCTGCCGC
AGCACGTGGCTGCAAACCAAGCAGGAGGGCGAACAGGTGCTGAGGGAGCT
GCTGCCGCACGCCACCATTGTGCGCCCGGCGGATATGTTTGGCGCGGAGG
ATCGACTGCTCACGCGCATGGCCACCAACCTGGTCAAGTGGCCGCTGATT
GCGCTGGCGGACGACGGCGAGTCGCGCGTGCAGCCGGTGTGGGTGAATGA
CGTGGCCAGCGTGGTGGCGGCCGCGGTGAGGGACCCGGACAAGTTTGCGG
GCAAGACGCTGGAACTGGGCGGGCCGGACGTGGTGTCCGTGCGCGAGCTT
TACGATTTCGTGGGCGAGTCGACGAAGCGCTCGGCGCGCTTTTTGCCCGT
GCCGGCGAGGGCGATGCACTTTGGCATGCGCTTTGCGGGCATGAGGCTGC
CGCTTGTGAACCCGGACCCGGTGTACACGCAGGAGCAGGTGATGGTGGAG
ACGGCTGAGCGCGTGTTGGACGGCGCGAAGCCGCGCGTGTTGCGCTTTGA
GCAGCTCGATGCGGCGCCCATCAGCGTGTTCTCGGACCTCGGGCACGAGA
TTCTGCGCCGCTTCCGTCGCGGCGGCGACCGCAGCAGTCTGTTCCACGTG
GACTAA
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