Gcaud1183.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1183.t1
Unique Name	Gcaud1183.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_376_length_27957_cov_4.369698	contig	NODE_376_length_27957_cov_4.369698:2385..3092 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI45556
PFAMs	Helitron_like_N
Max annot lvl	2759\|Eukaryota
Evalue	2.03e-17
EggNOG OGs	2EAS0@1\|root,2SGYX@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1183	Gcaud1183	Gracilaria caudata M_176_S67 male	gene	NODE_376_length_27957_cov_4.369698 2385..3092 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1183.t1.start1	Gcaud1183.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_376_length_27957_cov_4.369698 2385..2387 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1183.t1.CDS1	Gcaud1183.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_376_length_27957_cov_4.369698 2385..3092 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1183.t1.exon1	Gcaud1183.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_376_length_27957_cov_4.369698 2385..3092 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1183.t1.stop1	Gcaud1183.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_376_length_27957_cov_4.369698 3090..3092 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1183.t1	Gcaud1183.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_376_length_27957_cov_4.369698 2385..3092 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_376_length_27957_cov_4.369698:2385..3092+
coding sequence from alignment at NODE_376_length_27957_cov_4.369698:2385..3092+

mRNA sequence

>Gcaud1183.t1 ID=Gcaud1183.t1|Name=Gcaud1183.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
MKPRSSSQATKWCRVLKGSCEVPLQLREFYDISSAISDLKGALLSREVLD
FDSEGQPTGYLYLCNRCEKALAGNAKVTKFSIANGFDIGTLPSMFDHVNN
IELRLTSLTRFAAQITMLRGGKHKALQGHVSIVRINPLSIATSLPRILDK
EDDSFLVVITGKLTPTQKILAKKRHTACFDVVKRLLLFYIKRNELYRRAN
LKLDEEALKHHKKYDSEACVPMYVFERGETRTGDG*

spliced messenger RNA

>Gcaud1183.t1 ID=Gcaud1183.t1|Name=Gcaud1183.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:2385..3092+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCGAGGAGTAGTTCACAGGCCACGAAATGGTGCCGCGTACTAAA
GGGAAGTTGTGAAGTTCCCCTTCAGCTCCGTGAATTCTACGACATCTCTT
CGGCCATTTCCGATCTCAAGGGAGCTCTGCTATCGCGTGAAGTATTGGAT
TTTGACAGTGAGGGACAGCCGACCGGATATCTGTACTTGTGCAATCGCTG
TGAAAAGGCATTGGCAGGAAACGCCAAGGTTACAAAGTTTTCTATCGCGA
ACGGTTTTGATATTGGAACACTTCCTTCAATGTTCGACCACGTGAATAAT
ATAGAACTTAGACTTACGAGTCTCACAAGATTTGCCGCACAGATAACCAT
GCTCAGAGGTGGAAAACATAAAGCGCTACAGGGCCATGTATCAATTGTTC
GGATAAATCCTTTATCAATCGCAACATCTTTGCCACGCATTCTTGACAAG
GAAGATGACAGCTTCTTGGTCGTCATTACTGGAAAGCTTACTCCAACTCA
AAAAATTCTAGCGAAGAAAAGACACACTGCATGCTTTGACGTAGTCAAAC
GGCTGCTATTATTTTACATAAAACGTAACGAACTTTATCGTAGAGCAAAC
CTGAAGCTCGATGAAGAGGCTTTGAAACACCACAAGAAGTACGATAGTGA
AGCTTGTGTTCCAATGTATGTTTTTGAAAGGGGTGAAACTCGCACTGGTG
ATGGATAA

protein sequence of Gcaud1183.t1

>Gcaud1183.t1 ID=Gcaud1183.t1|Name=Gcaud1183.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MKPRSSSQATKWCRVLKGSCEVPLQLREFYDISSAISDLKGALLSREVLD
FDSEGQPTGYLYLCNRCEKALAGNAKVTKFSIANGFDIGTLPSMFDHVNN
IELRLTSLTRFAAQITMLRGGKHKALQGHVSIVRINPLSIATSLPRILDK
EDDSFLVVITGKLTPTQKILAKKRHTACFDVVKRLLLFYIKRNELYRRAN
LKLDEEALKHHKKYDSEACVPMYVFERGETRTGDG*

mRNA from alignment at NODE_376_length_27957_cov_4.369698:2385..3092+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1183.t1 ID=Gcaud1183.t1|Name=Gcaud1183.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:2385..3092+ (Gracilaria caudata M_176_S67 male)
ATGAAACCGAGGAGTAGTTCACAGGCCACGAAATGGTGCCGCGTACTAAA
GGGAAGTTGTGAAGTTCCCCTTCAGCTCCGTGAATTCTACGACATCTCTT
CGGCCATTTCCGATCTCAAGGGAGCTCTGCTATCGCGTGAAGTATTGGAT
TTTGACAGTGAGGGACAGCCGACCGGATATCTGTACTTGTGCAATCGCTG
TGAAAAGGCATTGGCAGGAAACGCCAAGGTTACAAAGTTTTCTATCGCGA
ACGGTTTTGATATTGGAACACTTCCTTCAATGTTCGACCACGTGAATAAT
ATAGAACTTAGACTTACGAGTCTCACAAGATTTGCCGCACAGATAACCAT
GCTCAGAGGTGGAAAACATAAAGCGCTACAGGGCCATGTATCAATTGTTC
GGATAAATCCTTTATCAATCGCAACATCTTTGCCACGCATTCTTGACAAG
GAAGATGACAGCTTCTTGGTCGTCATTACTGGAAAGCTTACTCCAACTCA
AAAAATTCTAGCGAAGAAAAGACACACTGCATGCTTTGACGTAGTCAAAC
GGCTGCTATTATTTTACATAAAACGTAACGAACTTTATCGTAGAGCAAAC
CTGAAGCTCGATGAAGAGGCTTTGAAACACCACAAGAAGTACGATAGTGA
AGCTTGTGTTCCAATGTATGTTTTTGAAAGGGGTGAAACTCGCACTGGTG
ATGGATAA

Coding sequence (CDS) from alignment at NODE_376_length_27957_cov_4.369698:2385..3092+

>Gcaud1183.t1 ID=Gcaud1183.t1|Name=Gcaud1183.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:2385..3092+ (Gracilaria caudata M_176_S67 male)
ATGAAACCGAGGAGTAGTTCACAGGCCACGAAATGGTGCCGCGTACTAAA
GGGAAGTTGTGAAGTTCCCCTTCAGCTCCGTGAATTCTACGACATCTCTT
CGGCCATTTCCGATCTCAAGGGAGCTCTGCTATCGCGTGAAGTATTGGAT
TTTGACAGTGAGGGACAGCCGACCGGATATCTGTACTTGTGCAATCGCTG
TGAAAAGGCATTGGCAGGAAACGCCAAGGTTACAAAGTTTTCTATCGCGA
ACGGTTTTGATATTGGAACACTTCCTTCAATGTTCGACCACGTGAATAAT
ATAGAACTTAGACTTACGAGTCTCACAAGATTTGCCGCACAGATAACCAT
GCTCAGAGGTGGAAAACATAAAGCGCTACAGGGCCATGTATCAATTGTTC
GGATAAATCCTTTATCAATCGCAACATCTTTGCCACGCATTCTTGACAAG
GAAGATGACAGCTTCTTGGTCGTCATTACTGGAAAGCTTACTCCAACTCA
AAAAATTCTAGCGAAGAAAAGACACACTGCATGCTTTGACGTAGTCAAAC
GGCTGCTATTATTTTACATAAAACGTAACGAACTTTATCGTAGAGCAAAC
CTGAAGCTCGATGAAGAGGCTTTGAAACACCACAAGAAGTACGATAGTGA
AGCTTGTGTTCCAATGTATGTTTTTGAAAGGGGTGAAACTCGCACTGGTG
ATGGATAA