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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1182.t1.stop1 | Gcaud1182.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_376_length_27957_cov_4.369698 488..490 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1182.t1.start1 | Gcaud1182.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_376_length_27957_cov_4.369698 1598..1600 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1182.t1 ID=Gcaud1182.t1|Name=Gcaud1182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=279bp
MEIISTATPNMNGPNATIQKIKGSSSKKKDEVPPCSVAKRSKSSRNTSNM
NRNADSNRLSRFQGLNHSKLSSSWTTTPTTAGGLIRYAKEALAAKKTARV
LVSVMLKLSPYRVPNDWNGFKFFFFADHTGPVSIAGPVASFEVLRRSPMD
SNISLSVCIVKVKNPFEAPEAVGTFDVMVNVMRDPMNCNVIVPRLIGDCC
MAQLDKEEQRISLMLQDCTGFVVLNVHGIDVVSASSPYEDVQIKKAHKKV
LTRHMNVVKGTKEEDFVFLPPKKPAMDA* back to topspliced messenger RNA >Gcaud1182.t1 ID=Gcaud1182.t1|Name=Gcaud1182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=837bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:488..1600- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGATAATATCAACGGCCACCCCGAACATGAATGGCCCAAACGCAAC
GATTCAGAAGATAAAAGGGTCATCGTCGAAGAAGAAGGACGAGGTCCCAC
CATGCTCCGTCGCGAAGCGTTCAAAGAGTTCTAGGAATACTTCGAATATG
AATCGGAACGCAGACAGCAACCGCCTCTCCAGGTTTCAAGGACTTAATCA
TTCCAAGTTGTCCAGCAGCTGGACAACTACCCCAACCACAGCAGGAGGTC
TTATTCGTTATGCGAAGGAAGCTTTAGCCGCAAAGAAAACTGCAAGAGTT
CTCGTCTCTGTAATGCTGAAACTGAGTCCCTACCGTGTGCCGAATGATTG
GAATGGTTTCAAGTTCTTTTTCTTCGCAGACCATACGGGACCTGTATCTA
TCGCGGGGCCTGTTGCATCATTTGAAGTTCTGCGCAGATCACCCATGGAT
TCCAACATTTCACTTTCAGTGTGCATTGTAAAGGTTAAGAATCCGTTTGA
AGCACCAGAGGCCGTGGGCACGTTTGACGTCATGGTAAACGTCATGCGTG
ATCCAATGAACTGCAACGTCATTGTACCAAGGTTGATTGGAGACTGTTGC
ATGGCTCAACTTGATAAGGAAGAGCAAAGAATATCTCTCATGCTGCAGGA
TTGTACCGGCTTTGTTGTGCTAAATGTACACGGAATTGATGTTGTGAGTG
CCAGTTCACCATACGAAGACGTACAAATCAAGAAAGCTCATAAGAAGGTT
TTGACTCGTCACATGAATGTTGTGAAAGGAACGAAAGAAGAAGACTTCGT
GTTTCTACCACCAAAGAAGCCGGCCATGGATGCGTAA back to topprotein sequence of Gcaud1182.t1 >Gcaud1182.t1 ID=Gcaud1182.t1|Name=Gcaud1182.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=279bp
MEIISTATPNMNGPNATIQKIKGSSSKKKDEVPPCSVAKRSKSSRNTSNM
NRNADSNRLSRFQGLNHSKLSSSWTTTPTTAGGLIRYAKEALAAKKTARV
LVSVMLKLSPYRVPNDWNGFKFFFFADHTGPVSIAGPVASFEVLRRSPMD
SNISLSVCIVKVKNPFEAPEAVGTFDVMVNVMRDPMNCNVIVPRLIGDCC
MAQLDKEEQRISLMLQDCTGFVVLNVHGIDVVSASSPYEDVQIKKAHKKV
LTRHMNVVKGTKEEDFVFLPPKKPAMDA* back to topmRNA from alignment at NODE_376_length_27957_cov_4.369698:488..1600- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1182.t1 ID=Gcaud1182.t1|Name=Gcaud1182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:488..1600- (Gracilaria caudata M_176_S67 male)
ATGGAGATAATATCAACGGCCACCCCGAACATGAATGGCCCAAACGCAAC
GATTCAGAAGATAAAAGGGTCATCGTCGAAGAAGAAGGACGAGGTCCCAC
CATGCTCCGTCGCGAAGCGTTCAAAGAGTTCTAGGAATACTTCGAATATG
AATCGGAACGCAGACAGCAACCGCCTCTCCAGGTTTCAAGGACTTAATCA
TTCCAAGTTGTCCAGCAGCTGGACAACTACCCCAACCACAGCAGGAGGTC
TTATTCGTTATGCGAAGGAAGCTTTAGCCGCAAAGAAAACTGCAAGAGTT
CTCGTCTCTGTAATGCTGAAACTGAGTCCCTACCGTGTGCCGAATGATTG
GAATGGTTTCAAGTTCTTTTTCTTCGCAGACCATACGGGACCTGTATCTA
TCGCGGGGCCTGTTGCATCATTTGAAGTTCTGCGCAGATCACCCATGGAT
TCCAACATTTCACTTTCAGTGGTAGGTCATAGATTTTATGTCACCCATTT
GTTGTCAAGTGCCTGTGACCGCCAGCTTCTAACTAGTTCTAAATATTCAT
CACATTCTCGAATACCAGGTATCAATTCAGGGACCATGAGTATGCAAGAA
CTCAACGGTTAATGAAGGGTGTCTCTACATCACGGTTTCCAAAAAGTGCA
TTGTAAAGGTTAAGAATCCGTTTGAAGCACCAGAGGCCGTGGGCACGTTT
GACGTCATGGTAAACGTCATGCGTGATCCAATGAACTGCAACGTCATTGT
ACCAAGGTTGATTGGAGACTGTTGCATGGCTCAACTTGATAAGGAAGAGC
AAAGAATATCTCTCATGCTGCAGGATTGTACCGGCTTTGTTGTCATCCAT
CTCTTGAACGTTCCTGGTAGTGTGAACGATCCGCAAGAGGAATCAGAGAG
GTGGCATGGGAGCACTTTCTTAGAGGCAAACTTCTTATGCAGGTGCTAAA
TGTACACGGAATTGATGTTGTGAGTGCCAGTTCACCATACGAAGACGTAC
AAATCAAGAAAGCTCATAAGAAGGTTTTGACTCGTCACATGAATGTTGTG
AAAGGAACGAAAGAAGAAGACTTCGTGTTTCTACCACCAAAGAAGCCGGC
CATGGATGCGTAA back to topCoding sequence (CDS) from alignment at NODE_376_length_27957_cov_4.369698:488..1600- >Gcaud1182.t1 ID=Gcaud1182.t1|Name=Gcaud1182.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=837bp|location=Sequence derived from alignment at NODE_376_length_27957_cov_4.369698:488..1600- (Gracilaria caudata M_176_S67 male)
ATGGAGATAATATCAACGGCCACCCCGAACATGAATGGCCCAAACGCAAC
GATTCAGAAGATAAAAGGGTCATCGTCGAAGAAGAAGGACGAGGTCCCAC
CATGCTCCGTCGCGAAGCGTTCAAAGAGTTCTAGGAATACTTCGAATATG
AATCGGAACGCAGACAGCAACCGCCTCTCCAGGTTTCAAGGACTTAATCA
TTCCAAGTTGTCCAGCAGCTGGACAACTACCCCAACCACAGCAGGAGGTC
TTATTCGTTATGCGAAGGAAGCTTTAGCCGCAAAGAAAACTGCAAGAGTT
CTCGTCTCTGTAATGCTGAAACTGAGTCCCTACCGTGTGCCGAATGATTG
GAATGGTTTCAAGTTCTTTTTCTTCGCAGACCATACGGGACCTGTATCTA
TCGCGGGGCCTGTTGCATCATTTGAAGTTCTGCGCAGATCACCCATGGAT
TCCAACATTTCACTTTCAGTGTGCATTGTAAAGGTTAAGAATCCGTTTGA
AGCACCAGAGGCCGTGGGCACGTTTGACGTCATGGTAAACGTCATGCGTG
ATCCAATGAACTGCAACGTCATTGTACCAAGGTTGATTGGAGACTGTTGC
ATGGCTCAACTTGATAAGGAAGAGCAAAGAATATCTCTCATGCTGCAGGA
TTGTACCGGCTTTGTTGTGCTAAATGTACACGGAATTGATGTTGTGAGTG
CCAGTTCACCATACGAAGACGTACAAATCAAGAAAGCTCATAAGAAGGTT
TTGACTCGTCACATGAATGTTGTGAAAGGAACGAAAGAAGAAGACTTCGT
GTTTCTACCACCAAAGAAGCCGGCCATGGATGCGTAA back to top
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