Gcaud1169.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1169.t1
Unique NameGcaud1169.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length107
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_291_length_32063_cov_4.500188contigNODE_291_length_32063_cov_4.500188:19858..20432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1169Gcaud1169Gracilaria caudata M_176_S67 malegeneNODE_291_length_32063_cov_4.500188 19858..20432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1169.t1Gcaud1169.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_291_length_32063_cov_4.500188 19858..20432 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1169.t1.start1Gcaud1169.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_291_length_32063_cov_4.500188 19858..19860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1169.t1.CDS1Gcaud1169.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_291_length_32063_cov_4.500188 19858..20142 +
Gcaud1169.t1.CDS2Gcaud1169.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_291_length_32063_cov_4.500188 20303..20322 +
Gcaud1169.t1.CDS3Gcaud1169.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_291_length_32063_cov_4.500188 20417..20432 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1169.t1.exon1Gcaud1169.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_291_length_32063_cov_4.500188 19858..20142 +
Gcaud1169.t1.exon2Gcaud1169.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_291_length_32063_cov_4.500188 20303..20322 +
Gcaud1169.t1.exon3Gcaud1169.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_291_length_32063_cov_4.500188 20417..20432 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1169.t1.intron1Gcaud1169.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_291_length_32063_cov_4.500188 20143..20302 +
Gcaud1169.t1.intron2Gcaud1169.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_291_length_32063_cov_4.500188 20323..20416 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1169.t1.stop1Gcaud1169.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_291_length_32063_cov_4.500188 20430..20432 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1169.t1 ID=Gcaud1169.t1|Name=Gcaud1169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=107bp
MKSSFNALVEQMEPVGMISARVHQVANVVWACRLKRFSISRVFQSSTKGI
LQSPGFQTFYAPFLSADSACITVDSGVKALSFTLSSRRRRSQLPFCGSFI
VSQQNP*
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spliced messenger RNA

>Gcaud1169.t1 ID=Gcaud1169.t1|Name=Gcaud1169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=321bp|location=Sequence derived from alignment at NODE_291_length_32063_cov_4.500188:19858..20432+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCGAGCTTTAATGCTCTTGTTGAACAGATGGAACCAGTAGGAAT
GATATCCGCAAGAGTGCATCAGGTTGCCAACGTCGTCTGGGCATGCCGCC
TGAAACGGTTCTCCATTTCTCGAGTTTTTCAATCATCTACGAAGGGTATC
TTACAAAGCCCTGGATTTCAAACTTTTTACGCTCCCTTTTTATCTGCAGA
TTCTGCCTGCATCACGGTGGACAGTGGAGTAAAAGCGCTCTCCTTCACTC
TTTCTTCTCGCCGAAGACGAAGCCAGCTACCCTTCTGCGGTTCTTTCATC
GTAAGTCAGCAAAACCCTTGA
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protein sequence of Gcaud1169.t1

>Gcaud1169.t1 ID=Gcaud1169.t1|Name=Gcaud1169.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=107bp
MKSSFNALVEQMEPVGMISARVHQVANVVWACRLKRFSISRVFQSSTKGI
LQSPGFQTFYAPFLSADSACITVDSGVKALSFTLSSRRRRSQLPFCGSFI
VSQQNP*
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mRNA from alignment at NODE_291_length_32063_cov_4.500188:19858..20432+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1169.t1 ID=Gcaud1169.t1|Name=Gcaud1169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=575bp|location=Sequence derived from alignment at NODE_291_length_32063_cov_4.500188:19858..20432+ (Gracilaria caudata M_176_S67 male)
ATGAAATCGAGCTTTAATGCTCTTGTTGAACAGATGGAACCAGTAGGAAT
GATATCCGCAAGAGTGCATCAGGTTGCCAACGTCGTCTGGGCATGCCGCC
TGAAACGGTTCTCCATTTCTCGAGTTTTTCAATCATCTACGAAGGGTATC
TTACAAAGCCCTGGATTTCAAACTTTTTACGCTCCCTTTTTATCTGCAGA
TTCTGCCTGCATCACGGTGGACAGTGGAGTAAAAGCGCTCTCCTTCACTC
TTTCTTCTCGCCGAAGACGAAGCCAGCTACCCTTCGTACGTAGCGTTGGC
GTTCCAGCGGTTCGGGCTGGGTCGGATTTCCTCATCAAATACCACCGGTA
TGTCCATTCGCGCAAAACTTCTCACCGGAAAGCTCCCCAGAATCGCATCT
CTCCGAAGTGAAACGACGCTATATTCGACATTGCAAAGCCTCTAGTGCGG
TTCTTTCATCGTAAGGTAAGAGCTGGAATGTCTCTCATTAGACCGCTTTC
TTCAGAGTCTGTACATGTTCTCACCAACACAGTTTTCCTGACTAACTATG
AACTGATAGTCAGCAAAACCCTTGA
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Coding sequence (CDS) from alignment at NODE_291_length_32063_cov_4.500188:19858..20432+

>Gcaud1169.t1 ID=Gcaud1169.t1|Name=Gcaud1169.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=321bp|location=Sequence derived from alignment at NODE_291_length_32063_cov_4.500188:19858..20432+ (Gracilaria caudata M_176_S67 male)
ATGAAATCGAGCTTTAATGCTCTTGTTGAACAGATGGAACCAGTAGGAAT
GATATCCGCAAGAGTGCATCAGGTTGCCAACGTCGTCTGGGCATGCCGCC
TGAAACGGTTCTCCATTTCTCGAGTTTTTCAATCATCTACGAAGGGTATC
TTACAAAGCCCTGGATTTCAAACTTTTTACGCTCCCTTTTTATCTGCAGA
TTCTGCCTGCATCACGGTGGACAGTGGAGTAAAAGCGCTCTCCTTCACTC
TTTCTTCTCGCCGAAGACGAAGCCAGCTACCCTTCTGCGGTTCTTTCATC
GTAAGTCAGCAAAACCCTTGA
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