Gcaud1152.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1152.t1
Unique NameGcaud1152.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_606_length_20981_cov_3.918238contigNODE_606_length_20981_cov_3.918238:6365..7927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1152Gcaud1152Gracilaria caudata M_176_S67 malegeneNODE_606_length_20981_cov_3.918238 6365..7927 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1152.t1.stop1Gcaud1152.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_606_length_20981_cov_3.918238 6365..6367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1152.t1.CDS1Gcaud1152.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_606_length_20981_cov_3.918238 6365..7927 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1152.t1.exon1Gcaud1152.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_606_length_20981_cov_3.918238 6365..7927 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1152.t1.start1Gcaud1152.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_606_length_20981_cov_3.918238 7925..7927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1152.t1Gcaud1152.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_606_length_20981_cov_3.918238 6365..7927 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1152.t1 ID=Gcaud1152.t1|Name=Gcaud1152.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=521bp
MISNFDVARKGASANDHKLLGHQADPLESSDDDAIPKGLKREAMAVGGWT
LSFGTLYPSAALREEVQRLKDAEGKQPSTHLTFKECGQQMSLDVCVGPLR
MARLAPCVSSPKHDIDLQLDEDEMENFFAVLQSYLLLNEINIEKLPPVFL
AISRKYELLPLHFAQLEMLVDCSPDSAFRLPAFLDEYDFVLQMLGDLLPR
LFWAHIARRIVLEFDESLCSAESTPMLWEQYQFRREGGTQYASLWQLLLE
LDLVQVMFNFAVGLRSKQLAHVLNFIVTKCVDLSQDEISLLNDRYMQQLL
NMDWGKLKPLMGRCVEVAKTWPEKAKGVLRQSLCKASLSDMDEICPEICF
KVEFPRKQQGVKVLYRDCGPTFKGLTLALKAVVDDGKFYIEVNLWRQRDF
HQSDGFVDMNKGDKVSVRIVGLECDCVCEMRRFSAEYSACRYWPIHKEHK
NLWFVERRPKKRFLLMKNVENDWFQFHSTGCSLMMNVSLRWLGTNDEDES
DAACQSDRYAPLANPDVDFY*
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spliced messenger RNA

>Gcaud1152.t1 ID=Gcaud1152.t1|Name=Gcaud1152.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at NODE_606_length_20981_cov_3.918238:6365..7927- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCCAATTTTGATGTTGCCCGAAAGGGAGCATCCGCCAATGACCA
CAAGCTTCTCGGCCACCAAGCCGACCCATTGGAAAGCAGCGACGATGATG
CTATTCCGAAAGGACTCAAGCGCGAGGCCATGGCTGTGGGAGGCTGGACT
CTCAGCTTCGGCACCCTCTATCCTTCCGCAGCTCTCCGTGAAGAAGTGCA
GCGTCTGAAGGACGCCGAAGGCAAACAGCCCAGCACGCACTTAACGTTCA
AAGAATGTGGCCAACAAATGAGTCTGGATGTGTGCGTCGGACCGCTCAGA
ATGGCCAGACTCGCGCCGTGTGTGTCGAGCCCAAAACACGACATCGACCT
TCAGCTGGACGAGGATGAGATGGAAAACTTCTTCGCCGTGTTGCAGAGCT
ACCTGTTGCTCAACGAGATTAACATTGAAAAGTTGCCGCCGGTGTTTCTG
GCCATCTCCAGAAAGTATGAGTTGCTGCCGCTTCATTTCGCGCAACTGGA
AATGCTGGTGGACTGTTCGCCAGATTCTGCATTCCGACTGCCAGCGTTTC
TCGACGAATACGACTTTGTGTTGCAAATGCTGGGCGATTTGCTTCCGCGT
TTGTTCTGGGCGCACATTGCTCGTCGAATTGTATTGGAGTTTGATGAGAG
CTTGTGTTCTGCAGAGTCCACTCCAATGTTGTGGGAACAGTATCAATTCC
GACGAGAGGGAGGAACGCAGTATGCAAGCCTGTGGCAACTTCTTCTCGAG
CTTGATTTGGTGCAAGTGATGTTCAACTTTGCGGTGGGACTGCGTTCCAA
GCAGCTTGCACACGTTCTCAACTTCATAGTGACCAAATGCGTGGACCTCA
GCCAGGACGAAATCAGTCTGCTCAACGACCGCTACATGCAACAGCTGCTA
AACATGGATTGGGGTAAGCTCAAACCGTTGATGGGACGCTGCGTGGAGGT
GGCAAAAACATGGCCGGAAAAAGCCAAGGGTGTGCTGAGACAGTCGTTGT
GCAAAGCGAGCTTGTCCGACATGGACGAGATCTGCCCCGAAATCTGTTTC
AAGGTGGAATTCCCCCGAAAGCAGCAAGGTGTGAAGGTGTTGTACAGGGA
TTGTGGTCCCACCTTCAAGGGTCTCACGCTCGCGCTCAAGGCGGTGGTGG
ATGACGGAAAGTTCTACATCGAAGTGAACCTATGGAGACAGCGAGATTTT
CATCAAAGCGACGGCTTCGTGGACATGAATAAAGGCGACAAGGTTTCGGT
TCGAATCGTGGGACTGGAGTGCGACTGCGTTTGTGAGATGAGAAGGTTCA
GTGCGGAGTATTCGGCGTGCAGATATTGGCCCATTCACAAGGAGCACAAG
AACCTGTGGTTTGTTGAGCGACGCCCGAAGAAACGGTTCCTGCTGATGAA
GAACGTGGAGAACGACTGGTTCCAGTTCCACTCCACCGGATGCAGTCTGA
TGATGAACGTTTCGCTGCGCTGGCTGGGCACGAACGATGAGGATGAGTCG
GATGCAGCTTGCCAAAGCGATCGATACGCGCCGCTGGCGAACCCGGACGT
CGACTTCTACTGA
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protein sequence of Gcaud1152.t1

>Gcaud1152.t1 ID=Gcaud1152.t1|Name=Gcaud1152.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=521bp
MISNFDVARKGASANDHKLLGHQADPLESSDDDAIPKGLKREAMAVGGWT
LSFGTLYPSAALREEVQRLKDAEGKQPSTHLTFKECGQQMSLDVCVGPLR
MARLAPCVSSPKHDIDLQLDEDEMENFFAVLQSYLLLNEINIEKLPPVFL
AISRKYELLPLHFAQLEMLVDCSPDSAFRLPAFLDEYDFVLQMLGDLLPR
LFWAHIARRIVLEFDESLCSAESTPMLWEQYQFRREGGTQYASLWQLLLE
LDLVQVMFNFAVGLRSKQLAHVLNFIVTKCVDLSQDEISLLNDRYMQQLL
NMDWGKLKPLMGRCVEVAKTWPEKAKGVLRQSLCKASLSDMDEICPEICF
KVEFPRKQQGVKVLYRDCGPTFKGLTLALKAVVDDGKFYIEVNLWRQRDF
HQSDGFVDMNKGDKVSVRIVGLECDCVCEMRRFSAEYSACRYWPIHKEHK
NLWFVERRPKKRFLLMKNVENDWFQFHSTGCSLMMNVSLRWLGTNDEDES
DAACQSDRYAPLANPDVDFY*
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mRNA from alignment at NODE_606_length_20981_cov_3.918238:6365..7927-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1152.t1 ID=Gcaud1152.t1|Name=Gcaud1152.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at NODE_606_length_20981_cov_3.918238:6365..7927- (Gracilaria caudata M_176_S67 male)
ATGATTTCCAATTTTGATGTTGCCCGAAAGGGAGCATCCGCCAATGACCA
CAAGCTTCTCGGCCACCAAGCCGACCCATTGGAAAGCAGCGACGATGATG
CTATTCCGAAAGGACTCAAGCGCGAGGCCATGGCTGTGGGAGGCTGGACT
CTCAGCTTCGGCACCCTCTATCCTTCCGCAGCTCTCCGTGAAGAAGTGCA
GCGTCTGAAGGACGCCGAAGGCAAACAGCCCAGCACGCACTTAACGTTCA
AAGAATGTGGCCAACAAATGAGTCTGGATGTGTGCGTCGGACCGCTCAGA
ATGGCCAGACTCGCGCCGTGTGTGTCGAGCCCAAAACACGACATCGACCT
TCAGCTGGACGAGGATGAGATGGAAAACTTCTTCGCCGTGTTGCAGAGCT
ACCTGTTGCTCAACGAGATTAACATTGAAAAGTTGCCGCCGGTGTTTCTG
GCCATCTCCAGAAAGTATGAGTTGCTGCCGCTTCATTTCGCGCAACTGGA
AATGCTGGTGGACTGTTCGCCAGATTCTGCATTCCGACTGCCAGCGTTTC
TCGACGAATACGACTTTGTGTTGCAAATGCTGGGCGATTTGCTTCCGCGT
TTGTTCTGGGCGCACATTGCTCGTCGAATTGTATTGGAGTTTGATGAGAG
CTTGTGTTCTGCAGAGTCCACTCCAATGTTGTGGGAACAGTATCAATTCC
GACGAGAGGGAGGAACGCAGTATGCAAGCCTGTGGCAACTTCTTCTCGAG
CTTGATTTGGTGCAAGTGATGTTCAACTTTGCGGTGGGACTGCGTTCCAA
GCAGCTTGCACACGTTCTCAACTTCATAGTGACCAAATGCGTGGACCTCA
GCCAGGACGAAATCAGTCTGCTCAACGACCGCTACATGCAACAGCTGCTA
AACATGGATTGGGGTAAGCTCAAACCGTTGATGGGACGCTGCGTGGAGGT
GGCAAAAACATGGCCGGAAAAAGCCAAGGGTGTGCTGAGACAGTCGTTGT
GCAAAGCGAGCTTGTCCGACATGGACGAGATCTGCCCCGAAATCTGTTTC
AAGGTGGAATTCCCCCGAAAGCAGCAAGGTGTGAAGGTGTTGTACAGGGA
TTGTGGTCCCACCTTCAAGGGTCTCACGCTCGCGCTCAAGGCGGTGGTGG
ATGACGGAAAGTTCTACATCGAAGTGAACCTATGGAGACAGCGAGATTTT
CATCAAAGCGACGGCTTCGTGGACATGAATAAAGGCGACAAGGTTTCGGT
TCGAATCGTGGGACTGGAGTGCGACTGCGTTTGTGAGATGAGAAGGTTCA
GTGCGGAGTATTCGGCGTGCAGATATTGGCCCATTCACAAGGAGCACAAG
AACCTGTGGTTTGTTGAGCGACGCCCGAAGAAACGGTTCCTGCTGATGAA
GAACGTGGAGAACGACTGGTTCCAGTTCCACTCCACCGGATGCAGTCTGA
TGATGAACGTTTCGCTGCGCTGGCTGGGCACGAACGATGAGGATGAGTCG
GATGCAGCTTGCCAAAGCGATCGATACGCGCCGCTGGCGAACCCGGACGT
CGACTTCTACTGA
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Coding sequence (CDS) from alignment at NODE_606_length_20981_cov_3.918238:6365..7927-

>Gcaud1152.t1 ID=Gcaud1152.t1|Name=Gcaud1152.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1563bp|location=Sequence derived from alignment at NODE_606_length_20981_cov_3.918238:6365..7927- (Gracilaria caudata M_176_S67 male)
ATGATTTCCAATTTTGATGTTGCCCGAAAGGGAGCATCCGCCAATGACCA
CAAGCTTCTCGGCCACCAAGCCGACCCATTGGAAAGCAGCGACGATGATG
CTATTCCGAAAGGACTCAAGCGCGAGGCCATGGCTGTGGGAGGCTGGACT
CTCAGCTTCGGCACCCTCTATCCTTCCGCAGCTCTCCGTGAAGAAGTGCA
GCGTCTGAAGGACGCCGAAGGCAAACAGCCCAGCACGCACTTAACGTTCA
AAGAATGTGGCCAACAAATGAGTCTGGATGTGTGCGTCGGACCGCTCAGA
ATGGCCAGACTCGCGCCGTGTGTGTCGAGCCCAAAACACGACATCGACCT
TCAGCTGGACGAGGATGAGATGGAAAACTTCTTCGCCGTGTTGCAGAGCT
ACCTGTTGCTCAACGAGATTAACATTGAAAAGTTGCCGCCGGTGTTTCTG
GCCATCTCCAGAAAGTATGAGTTGCTGCCGCTTCATTTCGCGCAACTGGA
AATGCTGGTGGACTGTTCGCCAGATTCTGCATTCCGACTGCCAGCGTTTC
TCGACGAATACGACTTTGTGTTGCAAATGCTGGGCGATTTGCTTCCGCGT
TTGTTCTGGGCGCACATTGCTCGTCGAATTGTATTGGAGTTTGATGAGAG
CTTGTGTTCTGCAGAGTCCACTCCAATGTTGTGGGAACAGTATCAATTCC
GACGAGAGGGAGGAACGCAGTATGCAAGCCTGTGGCAACTTCTTCTCGAG
CTTGATTTGGTGCAAGTGATGTTCAACTTTGCGGTGGGACTGCGTTCCAA
GCAGCTTGCACACGTTCTCAACTTCATAGTGACCAAATGCGTGGACCTCA
GCCAGGACGAAATCAGTCTGCTCAACGACCGCTACATGCAACAGCTGCTA
AACATGGATTGGGGTAAGCTCAAACCGTTGATGGGACGCTGCGTGGAGGT
GGCAAAAACATGGCCGGAAAAAGCCAAGGGTGTGCTGAGACAGTCGTTGT
GCAAAGCGAGCTTGTCCGACATGGACGAGATCTGCCCCGAAATCTGTTTC
AAGGTGGAATTCCCCCGAAAGCAGCAAGGTGTGAAGGTGTTGTACAGGGA
TTGTGGTCCCACCTTCAAGGGTCTCACGCTCGCGCTCAAGGCGGTGGTGG
ATGACGGAAAGTTCTACATCGAAGTGAACCTATGGAGACAGCGAGATTTT
CATCAAAGCGACGGCTTCGTGGACATGAATAAAGGCGACAAGGTTTCGGT
TCGAATCGTGGGACTGGAGTGCGACTGCGTTTGTGAGATGAGAAGGTTCA
GTGCGGAGTATTCGGCGTGCAGATATTGGCCCATTCACAAGGAGCACAAG
AACCTGTGGTTTGTTGAGCGACGCCCGAAGAAACGGTTCCTGCTGATGAA
GAACGTGGAGAACGACTGGTTCCAGTTCCACTCCACCGGATGCAGTCTGA
TGATGAACGTTTCGCTGCGCTGGCTGGGCACGAACGATGAGGATGAGTCG
GATGCAGCTTGCCAAAGCGATCGATACGCGCCGCTGGCGAACCCGGACGT
CGACTTCTACTGA
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