Gcaud1148.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1148.t1
Unique Name	Gcaud1148.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	614

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_339_length_29353_cov_5.285558	contig	NODE_339_length_29353_cov_5.285558:12639..14480 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1148	Gcaud1148	Gracilaria caudata M_176_S67 male	gene	NODE_339_length_29353_cov_5.285558 12639..14480 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1148.t1.start1	Gcaud1148.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_339_length_29353_cov_5.285558 12639..12641 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1148.t1.CDS1	Gcaud1148.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_339_length_29353_cov_5.285558 12639..14480 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1148.t1.exon1	Gcaud1148.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_339_length_29353_cov_5.285558 12639..14480 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1148.t1.stop1	Gcaud1148.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_339_length_29353_cov_5.285558 14478..14480 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1148.t1	Gcaud1148.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_339_length_29353_cov_5.285558 12639..14480 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_339_length_29353_cov_5.285558:12639..14480+
coding sequence from alignment at NODE_339_length_29353_cov_5.285558:12639..14480+

mRNA sequence

>Gcaud1148.t1 ID=Gcaud1148.t1|Name=Gcaud1148.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=614bp
MDDYGVPLSQYIISLNQSISRQHETKRHEAFTSSREIDNIFRKRARLRKS
LDHPEPVAIVRQRIRSNYKHLDNSIIAFFLVLAETIPEGEIVLSGDLQIL
QLTTDGTCERVERMAFEIGILRELSSSAQSLEDFVEILSQNMDSSQWFTL
ELFVTDEKGPVTVHPKQHTVNTVLRSFMDIISKHYKDDVTVMKVSDTFVP
TKQRESTVAVHNYDQNEMIESTALLDILRRQRHLAPARVIDNFRKANIYD
QKRNVVLIGLTKSRKSGTANDIISFLSSDAPRMVFLEERAFSHTNKVRCF
ETEHVRVWDTPGLDDQVGRGTVFIKKVCNLMDSLSQVNAVYLCLKDSSEL
SPNLLAPVREVIEFLPSSVRHRVCIAFTKSDKLESIDRLAVRMNAHHAGL
NADVQMCQATRNACDYSLHEKIQADVSLPPVRGGYLARTLEAFEKLRKPG
SDLAGSINREVKLSLSRLEERIRLSSSLNSTHGVVFSLKRAHIEVKSYSR
VIHNPKSIPRGAKVELVVFLLSEKRLSGFDLMKHKLRGDGTYEKLEKYIV
QNELVLLDRVHEAGRFESLFSSSEKCVMVMVQMREVITKNLLNDVDQAVH
YFSDRSADAAGSE*

spliced messenger RNA

>Gcaud1148.t1 ID=Gcaud1148.t1|Name=Gcaud1148.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:12639..14480+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGATTATGGAGTGCCTTTGAGTCAATATATTATATCACTGAATCA
GAGCATTTCACGACAGCATGAGACAAAAAGGCACGAAGCCTTTACCAGCT
CTCGGGAGATCGACAATATTTTTCGAAAGAGAGCTCGATTACGGAAGTCC
CTAGATCATCCTGAACCGGTTGCAATAGTTCGACAACGAATTAGAAGTAA
CTATAAACACTTGGACAACTCCATCATTGCGTTCTTTCTGGTCCTGGCGG
AAACAATCCCCGAGGGAGAGATTGTGTTGAGTGGTGATCTTCAGATCCTC
CAGTTAACCACGGACGGCACGTGTGAGAGGGTGGAAAGAATGGCTTTCGA
GATTGGGATCTTGCGAGAACTATCTTCAAGCGCGCAGAGTCTCGAGGATT
TCGTGGAGATTCTATCTCAAAATATGGACAGCAGTCAGTGGTTCACCCTG
GAGCTTTTCGTTACCGATGAGAAAGGCCCGGTGACAGTTCATCCGAAGCA
ACACACAGTGAATACGGTGTTGAGGAGTTTCATGGATATTATCTCCAAGC
ATTACAAGGATGATGTGACTGTGATGAAGGTGAGTGACACTTTTGTGCCG
ACGAAGCAGAGAGAGAGCACTGTCGCAGTTCATAACTATGACCAAAATGA
AATGATTGAAAGCACGGCACTTTTGGATATTCTCAGAAGACAAAGACACC
TCGCGCCCGCCAGAGTGATAGATAACTTTCGAAAAGCAAATATCTATGAT
CAGAAGAGGAACGTCGTCCTCATAGGTTTGACCAAATCTCGCAAGTCCGG
AACAGCAAATGATATAATAAGCTTCTTGAGCAGCGATGCACCAAGGATGG
TGTTCTTAGAAGAACGCGCTTTTTCCCACACAAATAAGGTTCGCTGTTTT
GAAACTGAGCATGTGAGGGTGTGGGATACGCCAGGTTTAGATGATCAAGT
TGGACGTGGCACGGTCTTTATCAAAAAGGTTTGCAACTTAATGGACTCCT
TGTCGCAAGTGAATGCCGTATACCTGTGTTTGAAGGATTCCAGTGAGCTT
TCGCCCAATCTTCTCGCACCTGTGAGAGAAGTAATTGAATTCCTTCCTAG
CAGTGTTCGACACAGAGTCTGCATCGCTTTCACTAAATCAGACAAGCTGG
AATCCATCGACAGGCTCGCTGTGCGCATGAATGCACATCACGCCGGTCTG
AATGCTGACGTTCAAATGTGTCAAGCAACCAGGAATGCCTGTGATTATTC
ACTTCATGAAAAGATACAGGCGGACGTGTCACTTCCGCCCGTCCGAGGAG
GATATCTGGCACGAACTTTGGAAGCATTTGAGAAATTAAGGAAACCAGGT
TCGGATTTGGCGGGTTCCATTAATCGTGAGGTGAAGTTATCCTTGTCGAG
ACTTGAAGAACGAATAAGGCTTTCCTCCAGCCTGAATTCTACTCACGGTG
TCGTCTTCTCTCTCAAACGTGCTCATATTGAAGTGAAGTCCTACAGTCGA
GTTATTCATAATCCGAAGTCGATTCCTAGGGGAGCAAAAGTGGAGCTTGT
GGTGTTTCTCCTATCGGAAAAACGTCTTTCAGGGTTTGATCTCATGAAGC
ATAAATTACGAGGGGATGGTACCTATGAGAAACTGGAAAAGTACATTGTC
CAAAATGAACTAGTTCTTCTTGACCGGGTACACGAGGCTGGGAGATTCGA
ATCCTTATTTAGCTCTTCAGAAAAATGTGTGATGGTAATGGTACAGATGC
GAGAAGTGATTACTAAGAACCTACTTAATGATGTAGACCAAGCAGTCCAT
TACTTTTCAGACCGTTCCGCAGATGCTGCTGGTTCGGAATGA

protein sequence of Gcaud1148.t1

>Gcaud1148.t1 ID=Gcaud1148.t1|Name=Gcaud1148.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=614bp
MDDYGVPLSQYIISLNQSISRQHETKRHEAFTSSREIDNIFRKRARLRKS
LDHPEPVAIVRQRIRSNYKHLDNSIIAFFLVLAETIPEGEIVLSGDLQIL
QLTTDGTCERVERMAFEIGILRELSSSAQSLEDFVEILSQNMDSSQWFTL
ELFVTDEKGPVTVHPKQHTVNTVLRSFMDIISKHYKDDVTVMKVSDTFVP
TKQRESTVAVHNYDQNEMIESTALLDILRRQRHLAPARVIDNFRKANIYD
QKRNVVLIGLTKSRKSGTANDIISFLSSDAPRMVFLEERAFSHTNKVRCF
ETEHVRVWDTPGLDDQVGRGTVFIKKVCNLMDSLSQVNAVYLCLKDSSEL
SPNLLAPVREVIEFLPSSVRHRVCIAFTKSDKLESIDRLAVRMNAHHAGL
NADVQMCQATRNACDYSLHEKIQADVSLPPVRGGYLARTLEAFEKLRKPG
SDLAGSINREVKLSLSRLEERIRLSSSLNSTHGVVFSLKRAHIEVKSYSR
VIHNPKSIPRGAKVELVVFLLSEKRLSGFDLMKHKLRGDGTYEKLEKYIV
QNELVLLDRVHEAGRFESLFSSSEKCVMVMVQMREVITKNLLNDVDQAVH
YFSDRSADAAGSE*

mRNA from alignment at NODE_339_length_29353_cov_5.285558:12639..14480+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1148.t1 ID=Gcaud1148.t1|Name=Gcaud1148.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:12639..14480+ (Gracilaria caudata M_176_S67 male)
ATGGATGATTATGGAGTGCCTTTGAGTCAATATATTATATCACTGAATCA
GAGCATTTCACGACAGCATGAGACAAAAAGGCACGAAGCCTTTACCAGCT
CTCGGGAGATCGACAATATTTTTCGAAAGAGAGCTCGATTACGGAAGTCC
CTAGATCATCCTGAACCGGTTGCAATAGTTCGACAACGAATTAGAAGTAA
CTATAAACACTTGGACAACTCCATCATTGCGTTCTTTCTGGTCCTGGCGG
AAACAATCCCCGAGGGAGAGATTGTGTTGAGTGGTGATCTTCAGATCCTC
CAGTTAACCACGGACGGCACGTGTGAGAGGGTGGAAAGAATGGCTTTCGA
GATTGGGATCTTGCGAGAACTATCTTCAAGCGCGCAGAGTCTCGAGGATT
TCGTGGAGATTCTATCTCAAAATATGGACAGCAGTCAGTGGTTCACCCTG
GAGCTTTTCGTTACCGATGAGAAAGGCCCGGTGACAGTTCATCCGAAGCA
ACACACAGTGAATACGGTGTTGAGGAGTTTCATGGATATTATCTCCAAGC
ATTACAAGGATGATGTGACTGTGATGAAGGTGAGTGACACTTTTGTGCCG
ACGAAGCAGAGAGAGAGCACTGTCGCAGTTCATAACTATGACCAAAATGA
AATGATTGAAAGCACGGCACTTTTGGATATTCTCAGAAGACAAAGACACC
TCGCGCCCGCCAGAGTGATAGATAACTTTCGAAAAGCAAATATCTATGAT
CAGAAGAGGAACGTCGTCCTCATAGGTTTGACCAAATCTCGCAAGTCCGG
AACAGCAAATGATATAATAAGCTTCTTGAGCAGCGATGCACCAAGGATGG
TGTTCTTAGAAGAACGCGCTTTTTCCCACACAAATAAGGTTCGCTGTTTT
GAAACTGAGCATGTGAGGGTGTGGGATACGCCAGGTTTAGATGATCAAGT
TGGACGTGGCACGGTCTTTATCAAAAAGGTTTGCAACTTAATGGACTCCT
TGTCGCAAGTGAATGCCGTATACCTGTGTTTGAAGGATTCCAGTGAGCTT
TCGCCCAATCTTCTCGCACCTGTGAGAGAAGTAATTGAATTCCTTCCTAG
CAGTGTTCGACACAGAGTCTGCATCGCTTTCACTAAATCAGACAAGCTGG
AATCCATCGACAGGCTCGCTGTGCGCATGAATGCACATCACGCCGGTCTG
AATGCTGACGTTCAAATGTGTCAAGCAACCAGGAATGCCTGTGATTATTC
ACTTCATGAAAAGATACAGGCGGACGTGTCACTTCCGCCCGTCCGAGGAG
GATATCTGGCACGAACTTTGGAAGCATTTGAGAAATTAAGGAAACCAGGT
TCGGATTTGGCGGGTTCCATTAATCGTGAGGTGAAGTTATCCTTGTCGAG
ACTTGAAGAACGAATAAGGCTTTCCTCCAGCCTGAATTCTACTCACGGTG
TCGTCTTCTCTCTCAAACGTGCTCATATTGAAGTGAAGTCCTACAGTCGA
GTTATTCATAATCCGAAGTCGATTCCTAGGGGAGCAAAAGTGGAGCTTGT
GGTGTTTCTCCTATCGGAAAAACGTCTTTCAGGGTTTGATCTCATGAAGC
ATAAATTACGAGGGGATGGTACCTATGAGAAACTGGAAAAGTACATTGTC
CAAAATGAACTAGTTCTTCTTGACCGGGTACACGAGGCTGGGAGATTCGA
ATCCTTATTTAGCTCTTCAGAAAAATGTGTGATGGTAATGGTACAGATGC
GAGAAGTGATTACTAAGAACCTACTTAATGATGTAGACCAAGCAGTCCAT
TACTTTTCAGACCGTTCCGCAGATGCTGCTGGTTCGGAATGA

Coding sequence (CDS) from alignment at NODE_339_length_29353_cov_5.285558:12639..14480+

>Gcaud1148.t1 ID=Gcaud1148.t1|Name=Gcaud1148.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1842bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:12639..14480+ (Gracilaria caudata M_176_S67 male)
ATGGATGATTATGGAGTGCCTTTGAGTCAATATATTATATCACTGAATCA
GAGCATTTCACGACAGCATGAGACAAAAAGGCACGAAGCCTTTACCAGCT
CTCGGGAGATCGACAATATTTTTCGAAAGAGAGCTCGATTACGGAAGTCC
CTAGATCATCCTGAACCGGTTGCAATAGTTCGACAACGAATTAGAAGTAA
CTATAAACACTTGGACAACTCCATCATTGCGTTCTTTCTGGTCCTGGCGG
AAACAATCCCCGAGGGAGAGATTGTGTTGAGTGGTGATCTTCAGATCCTC
CAGTTAACCACGGACGGCACGTGTGAGAGGGTGGAAAGAATGGCTTTCGA
GATTGGGATCTTGCGAGAACTATCTTCAAGCGCGCAGAGTCTCGAGGATT
TCGTGGAGATTCTATCTCAAAATATGGACAGCAGTCAGTGGTTCACCCTG
GAGCTTTTCGTTACCGATGAGAAAGGCCCGGTGACAGTTCATCCGAAGCA
ACACACAGTGAATACGGTGTTGAGGAGTTTCATGGATATTATCTCCAAGC
ATTACAAGGATGATGTGACTGTGATGAAGGTGAGTGACACTTTTGTGCCG
ACGAAGCAGAGAGAGAGCACTGTCGCAGTTCATAACTATGACCAAAATGA
AATGATTGAAAGCACGGCACTTTTGGATATTCTCAGAAGACAAAGACACC
TCGCGCCCGCCAGAGTGATAGATAACTTTCGAAAAGCAAATATCTATGAT
CAGAAGAGGAACGTCGTCCTCATAGGTTTGACCAAATCTCGCAAGTCCGG
AACAGCAAATGATATAATAAGCTTCTTGAGCAGCGATGCACCAAGGATGG
TGTTCTTAGAAGAACGCGCTTTTTCCCACACAAATAAGGTTCGCTGTTTT
GAAACTGAGCATGTGAGGGTGTGGGATACGCCAGGTTTAGATGATCAAGT
TGGACGTGGCACGGTCTTTATCAAAAAGGTTTGCAACTTAATGGACTCCT
TGTCGCAAGTGAATGCCGTATACCTGTGTTTGAAGGATTCCAGTGAGCTT
TCGCCCAATCTTCTCGCACCTGTGAGAGAAGTAATTGAATTCCTTCCTAG
CAGTGTTCGACACAGAGTCTGCATCGCTTTCACTAAATCAGACAAGCTGG
AATCCATCGACAGGCTCGCTGTGCGCATGAATGCACATCACGCCGGTCTG
AATGCTGACGTTCAAATGTGTCAAGCAACCAGGAATGCCTGTGATTATTC
ACTTCATGAAAAGATACAGGCGGACGTGTCACTTCCGCCCGTCCGAGGAG
GATATCTGGCACGAACTTTGGAAGCATTTGAGAAATTAAGGAAACCAGGT
TCGGATTTGGCGGGTTCCATTAATCGTGAGGTGAAGTTATCCTTGTCGAG
ACTTGAAGAACGAATAAGGCTTTCCTCCAGCCTGAATTCTACTCACGGTG
TCGTCTTCTCTCTCAAACGTGCTCATATTGAAGTGAAGTCCTACAGTCGA
GTTATTCATAATCCGAAGTCGATTCCTAGGGGAGCAAAAGTGGAGCTTGT
GGTGTTTCTCCTATCGGAAAAACGTCTTTCAGGGTTTGATCTCATGAAGC
ATAAATTACGAGGGGATGGTACCTATGAGAAACTGGAAAAGTACATTGTC
CAAAATGAACTAGTTCTTCTTGACCGGGTACACGAGGCTGGGAGATTCGA
ATCCTTATTTAGCTCTTCAGAAAAATGTGTGATGGTAATGGTACAGATGC
GAGAAGTGATTACTAAGAACCTACTTAATGATGTAGACCAAGCAGTCCAT
TACTTTTCAGACCGTTCCGCAGATGCTGCTGGTTCGGAATGA