Gcaud1147.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1147.t1
Unique Name	Gcaud1147.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_339_length_29353_cov_5.285558	contig	NODE_339_length_29353_cov_5.285558:9854..11512 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1147	Gcaud1147	Gracilaria caudata M_176_S67 male	gene	NODE_339_length_29353_cov_5.285558 9854..11512 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1147.t1.stop1	Gcaud1147.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_339_length_29353_cov_5.285558 9854..9856 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1147.t1.CDS1	Gcaud1147.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_339_length_29353_cov_5.285558 9854..11512 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1147.t1.exon1	Gcaud1147.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_339_length_29353_cov_5.285558 9854..11512 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1147.t1.start1	Gcaud1147.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_339_length_29353_cov_5.285558 11510..11512 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1147.t1	Gcaud1147.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_339_length_29353_cov_5.285558 9854..11512 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_339_length_29353_cov_5.285558:9854..11512-
coding sequence from alignment at NODE_339_length_29353_cov_5.285558:9854..11512-

mRNA sequence

>Gcaud1147.t1 ID=Gcaud1147.t1|Name=Gcaud1147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=553bp
MRSGKDEKADIKNSVRQSYPNIDEQTLKLVDNLIESSDIGEIRITGELRL
YRKQDEYNELTKALLLDMEVSNLLDDGVSSFQAVLHGIRDMEEDEWFVLE
FSASDESRAMSIQPPNETLNMLLESITEAVRCKRSDFKIIQISSELNPDT
LKSNTIVVNNFDEFNVSGEGKILEYLRSMQGLGMAKVVDNFKKAELSDEK
KNIIVFGLTKCRKSGTANDIIKMLDPHAPDMVFFEQAALSHTSKVRFFEV
GDVRVWDTPGLDDQRGRQEHFIKKLYRLIEAVPKISAMYLCVKDAGDLNP
NGMQPIRDIVDYLPQSSRGRVSMLLTRTSPTIGHADRNSVKLNAEKASLP
RDVVVIQATRDAQDYNLNTKVQEDLEKEPLPFGYITRILETLDEVERKQP
VLNTLVAFEVKRSMERLEELIKNRSTLRSTRGVVCSLHKHEIQIKSYNKP
LSKANSRPWNAKVEFEIFLKMNKRIGWAELIVDAVDRLGSYEMLTRYLSS
KSLLVFDDVLDTASGEAAFNSAQQFSFLLIPMTDVLSERLKEDVSKAARY
TN*

spliced messenger RNA

>Gcaud1147.t1 ID=Gcaud1147.t1|Name=Gcaud1147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:9854..11512- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATCTGGGAAGGACGAAAAAGCGGATATAAAGAATTCTGTTCGTCA
AAGCTATCCAAACATAGATGAACAAACCCTCAAGCTTGTGGATAACCTGA
TTGAGTCGTCGGATATTGGAGAAATCAGGATTACTGGAGAACTTCGCTTG
TACAGGAAGCAAGACGAATATAACGAACTAACGAAAGCTCTTCTCTTGGA
TATGGAAGTATCCAATCTCCTCGATGATGGTGTCAGTTCTTTCCAGGCCG
TACTGCATGGTATTCGAGATATGGAAGAGGATGAGTGGTTTGTACTGGAG
TTCAGTGCATCTGATGAAAGCCGGGCAATGTCAATTCAACCACCGAATGA
AACGCTGAACATGCTGTTGGAGAGCATAACAGAAGCTGTCCGATGTAAGC
GATCTGACTTTAAAATAATCCAGATCTCCTCGGAATTGAACCCCGATACG
CTAAAGTCCAACACCATTGTTGTTAACAACTTTGACGAGTTCAACGTTAG
TGGAGAGGGCAAAATTCTTGAGTATCTTCGTAGCATGCAGGGTCTCGGTA
TGGCCAAGGTTGTGGACAATTTCAAGAAGGCAGAACTCTCAGACGAGAAG
AAGAATATCATTGTCTTTGGATTGACGAAATGCAGAAAGTCTGGAACCGC
AAATGACATTATCAAAATGCTTGACCCACATGCACCGGATATGGTCTTTT
TCGAGCAAGCGGCTCTGTCGCACACCAGCAAAGTTCGATTTTTTGAGGTA
GGAGACGTCAGAGTATGGGACACACCAGGGCTTGATGATCAGAGAGGGCG
CCAGGAGCACTTCATCAAAAAGCTGTATCGGCTTATTGAAGCTGTCCCTA
AGATCTCTGCAATGTATTTATGCGTGAAGGATGCAGGAGACTTGAACCCG
AACGGAATGCAACCAATTCGAGATATTGTTGATTATCTTCCTCAAAGCTC
CAGAGGAAGGGTTTCCATGTTGCTCACGAGAACTTCGCCGACAATCGGTC
ACGCAGATAGGAATTCCGTGAAGCTCAATGCTGAAAAGGCGTCCTTACCA
AGAGATGTAGTAGTTATTCAGGCAACGAGAGATGCCCAAGATTACAACTT
GAACACCAAAGTCCAAGAAGATTTGGAGAAAGAGCCGTTGCCTTTCGGGT
ACATAACGAGAATTTTGGAGACATTGGATGAAGTTGAAAGGAAGCAACCC
GTATTGAATACCTTGGTGGCTTTTGAAGTGAAAAGATCCATGGAGAGACT
TGAAGAACTGATTAAGAACAGATCAACTTTGAGATCAACGCGGGGAGTTG
TGTGTTCGCTTCACAAACACGAAATTCAGATCAAGTCATACAATAAACCG
TTGTCAAAGGCCAACAGTCGTCCGTGGAATGCAAAGGTTGAGTTCGAGAT
ATTCTTGAAGATGAATAAGAGAATTGGGTGGGCCGAACTAATAGTAGATG
CAGTTGATCGTTTGGGATCGTACGAAATGCTTACTCGCTACCTTTCCTCA
AAAAGCCTTTTGGTATTCGACGACGTTTTAGATACCGCAAGTGGGGAGGC
TGCATTTAATTCGGCACAGCAATTTTCGTTTCTGTTGATCCCGATGACTG
ATGTACTCTCGGAAAGACTGAAGGAAGACGTGAGCAAAGCTGCAAGATAT
ACGAACTAA

protein sequence of Gcaud1147.t1

>Gcaud1147.t1 ID=Gcaud1147.t1|Name=Gcaud1147.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=553bp
MRSGKDEKADIKNSVRQSYPNIDEQTLKLVDNLIESSDIGEIRITGELRL
YRKQDEYNELTKALLLDMEVSNLLDDGVSSFQAVLHGIRDMEEDEWFVLE
FSASDESRAMSIQPPNETLNMLLESITEAVRCKRSDFKIIQISSELNPDT
LKSNTIVVNNFDEFNVSGEGKILEYLRSMQGLGMAKVVDNFKKAELSDEK
KNIIVFGLTKCRKSGTANDIIKMLDPHAPDMVFFEQAALSHTSKVRFFEV
GDVRVWDTPGLDDQRGRQEHFIKKLYRLIEAVPKISAMYLCVKDAGDLNP
NGMQPIRDIVDYLPQSSRGRVSMLLTRTSPTIGHADRNSVKLNAEKASLP
RDVVVIQATRDAQDYNLNTKVQEDLEKEPLPFGYITRILETLDEVERKQP
VLNTLVAFEVKRSMERLEELIKNRSTLRSTRGVVCSLHKHEIQIKSYNKP
LSKANSRPWNAKVEFEIFLKMNKRIGWAELIVDAVDRLGSYEMLTRYLSS
KSLLVFDDVLDTASGEAAFNSAQQFSFLLIPMTDVLSERLKEDVSKAARY
TN*

mRNA from alignment at NODE_339_length_29353_cov_5.285558:9854..11512-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1147.t1 ID=Gcaud1147.t1|Name=Gcaud1147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:9854..11512- (Gracilaria caudata M_176_S67 male)
ATGCGATCTGGGAAGGACGAAAAAGCGGATATAAAGAATTCTGTTCGTCA
AAGCTATCCAAACATAGATGAACAAACCCTCAAGCTTGTGGATAACCTGA
TTGAGTCGTCGGATATTGGAGAAATCAGGATTACTGGAGAACTTCGCTTG
TACAGGAAGCAAGACGAATATAACGAACTAACGAAAGCTCTTCTCTTGGA
TATGGAAGTATCCAATCTCCTCGATGATGGTGTCAGTTCTTTCCAGGCCG
TACTGCATGGTATTCGAGATATGGAAGAGGATGAGTGGTTTGTACTGGAG
TTCAGTGCATCTGATGAAAGCCGGGCAATGTCAATTCAACCACCGAATGA
AACGCTGAACATGCTGTTGGAGAGCATAACAGAAGCTGTCCGATGTAAGC
GATCTGACTTTAAAATAATCCAGATCTCCTCGGAATTGAACCCCGATACG
CTAAAGTCCAACACCATTGTTGTTAACAACTTTGACGAGTTCAACGTTAG
TGGAGAGGGCAAAATTCTTGAGTATCTTCGTAGCATGCAGGGTCTCGGTA
TGGCCAAGGTTGTGGACAATTTCAAGAAGGCAGAACTCTCAGACGAGAAG
AAGAATATCATTGTCTTTGGATTGACGAAATGCAGAAAGTCTGGAACCGC
AAATGACATTATCAAAATGCTTGACCCACATGCACCGGATATGGTCTTTT
TCGAGCAAGCGGCTCTGTCGCACACCAGCAAAGTTCGATTTTTTGAGGTA
GGAGACGTCAGAGTATGGGACACACCAGGGCTTGATGATCAGAGAGGGCG
CCAGGAGCACTTCATCAAAAAGCTGTATCGGCTTATTGAAGCTGTCCCTA
AGATCTCTGCAATGTATTTATGCGTGAAGGATGCAGGAGACTTGAACCCG
AACGGAATGCAACCAATTCGAGATATTGTTGATTATCTTCCTCAAAGCTC
CAGAGGAAGGGTTTCCATGTTGCTCACGAGAACTTCGCCGACAATCGGTC
ACGCAGATAGGAATTCCGTGAAGCTCAATGCTGAAAAGGCGTCCTTACCA
AGAGATGTAGTAGTTATTCAGGCAACGAGAGATGCCCAAGATTACAACTT
GAACACCAAAGTCCAAGAAGATTTGGAGAAAGAGCCGTTGCCTTTCGGGT
ACATAACGAGAATTTTGGAGACATTGGATGAAGTTGAAAGGAAGCAACCC
GTATTGAATACCTTGGTGGCTTTTGAAGTGAAAAGATCCATGGAGAGACT
TGAAGAACTGATTAAGAACAGATCAACTTTGAGATCAACGCGGGGAGTTG
TGTGTTCGCTTCACAAACACGAAATTCAGATCAAGTCATACAATAAACCG
TTGTCAAAGGCCAACAGTCGTCCGTGGAATGCAAAGGTTGAGTTCGAGAT
ATTCTTGAAGATGAATAAGAGAATTGGGTGGGCCGAACTAATAGTAGATG
CAGTTGATCGTTTGGGATCGTACGAAATGCTTACTCGCTACCTTTCCTCA
AAAAGCCTTTTGGTATTCGACGACGTTTTAGATACCGCAAGTGGGGAGGC
TGCATTTAATTCGGCACAGCAATTTTCGTTTCTGTTGATCCCGATGACTG
ATGTACTCTCGGAAAGACTGAAGGAAGACGTGAGCAAAGCTGCAAGATAT
ACGAACTAA

Coding sequence (CDS) from alignment at NODE_339_length_29353_cov_5.285558:9854..11512-

>Gcaud1147.t1 ID=Gcaud1147.t1|Name=Gcaud1147.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1659bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:9854..11512- (Gracilaria caudata M_176_S67 male)
ATGCGATCTGGGAAGGACGAAAAAGCGGATATAAAGAATTCTGTTCGTCA
AAGCTATCCAAACATAGATGAACAAACCCTCAAGCTTGTGGATAACCTGA
TTGAGTCGTCGGATATTGGAGAAATCAGGATTACTGGAGAACTTCGCTTG
TACAGGAAGCAAGACGAATATAACGAACTAACGAAAGCTCTTCTCTTGGA
TATGGAAGTATCCAATCTCCTCGATGATGGTGTCAGTTCTTTCCAGGCCG
TACTGCATGGTATTCGAGATATGGAAGAGGATGAGTGGTTTGTACTGGAG
TTCAGTGCATCTGATGAAAGCCGGGCAATGTCAATTCAACCACCGAATGA
AACGCTGAACATGCTGTTGGAGAGCATAACAGAAGCTGTCCGATGTAAGC
GATCTGACTTTAAAATAATCCAGATCTCCTCGGAATTGAACCCCGATACG
CTAAAGTCCAACACCATTGTTGTTAACAACTTTGACGAGTTCAACGTTAG
TGGAGAGGGCAAAATTCTTGAGTATCTTCGTAGCATGCAGGGTCTCGGTA
TGGCCAAGGTTGTGGACAATTTCAAGAAGGCAGAACTCTCAGACGAGAAG
AAGAATATCATTGTCTTTGGATTGACGAAATGCAGAAAGTCTGGAACCGC
AAATGACATTATCAAAATGCTTGACCCACATGCACCGGATATGGTCTTTT
TCGAGCAAGCGGCTCTGTCGCACACCAGCAAAGTTCGATTTTTTGAGGTA
GGAGACGTCAGAGTATGGGACACACCAGGGCTTGATGATCAGAGAGGGCG
CCAGGAGCACTTCATCAAAAAGCTGTATCGGCTTATTGAAGCTGTCCCTA
AGATCTCTGCAATGTATTTATGCGTGAAGGATGCAGGAGACTTGAACCCG
AACGGAATGCAACCAATTCGAGATATTGTTGATTATCTTCCTCAAAGCTC
CAGAGGAAGGGTTTCCATGTTGCTCACGAGAACTTCGCCGACAATCGGTC
ACGCAGATAGGAATTCCGTGAAGCTCAATGCTGAAAAGGCGTCCTTACCA
AGAGATGTAGTAGTTATTCAGGCAACGAGAGATGCCCAAGATTACAACTT
GAACACCAAAGTCCAAGAAGATTTGGAGAAAGAGCCGTTGCCTTTCGGGT
ACATAACGAGAATTTTGGAGACATTGGATGAAGTTGAAAGGAAGCAACCC
GTATTGAATACCTTGGTGGCTTTTGAAGTGAAAAGATCCATGGAGAGACT
TGAAGAACTGATTAAGAACAGATCAACTTTGAGATCAACGCGGGGAGTTG
TGTGTTCGCTTCACAAACACGAAATTCAGATCAAGTCATACAATAAACCG
TTGTCAAAGGCCAACAGTCGTCCGTGGAATGCAAAGGTTGAGTTCGAGAT
ATTCTTGAAGATGAATAAGAGAATTGGGTGGGCCGAACTAATAGTAGATG
CAGTTGATCGTTTGGGATCGTACGAAATGCTTACTCGCTACCTTTCCTCA
AAAAGCCTTTTGGTATTCGACGACGTTTTAGATACCGCAAGTGGGGAGGC
TGCATTTAATTCGGCACAGCAATTTTCGTTTCTGTTGATCCCGATGACTG
ATGTACTCTCGGAAAGACTGAAGGAAGACGTGAGCAAAGCTGCAAGATAT
ACGAACTAA