Gcaud1146.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1146.t1
Unique Name	Gcaud1146.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_339_length_29353_cov_5.285558	contig	NODE_339_length_29353_cov_5.285558:6441..8420 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1146	Gcaud1146	Gracilaria caudata M_176_S67 male	gene	NODE_339_length_29353_cov_5.285558 6441..8420 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1146.t1.stop1	Gcaud1146.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_339_length_29353_cov_5.285558 6441..6443 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1146.t1.CDS1	Gcaud1146.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_339_length_29353_cov_5.285558 6441..8420 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1146.t1.exon1	Gcaud1146.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_339_length_29353_cov_5.285558 6441..8420 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1146.t1.start1	Gcaud1146.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_339_length_29353_cov_5.285558 8418..8420 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1146.t1	Gcaud1146.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_339_length_29353_cov_5.285558 6441..8420 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_339_length_29353_cov_5.285558:6441..8420-
coding sequence from alignment at NODE_339_length_29353_cov_5.285558:6441..8420-

mRNA sequence

>Gcaud1146.t1 ID=Gcaud1146.t1|Name=Gcaud1146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp
MDASQHGDQSQANALLLQAAREGQLLGYITAMVHANIEHDDENGDTALII
AAGEGHLRIVEQLLVSGARVDHENRDGFTALLSSARNGHLKVVEELLQKN
ASALHRCRNGNNALHYAVLGGHDDVARELLRHGADPSQPNNGGEPAGALI
SRGSALFSEFAIHQQYEKLAETWRRALDEGITREQLLSLLQSSYLISSFE
SFLLTHNLLLLSIRQGVVGMAEASMFQGNRDFLLERIYLPVSRLDLSPSE
RFFVWRIVHHAEELSLIQNGHGAMVRLAAEMRSEIRENRQQLQSELICIV
RKIGSLDERVNRLEDWAAEFENEFGRLCNNQSLLLDDMKRMNVSLHQLHS
NLQRTEKYRKYSAIVSLVLAAVPVVGGVLGGASAFCSELLLGFNAEDMFA
GASAVAEQTSPSFAEVDLSNFRIAGALVSRSYLALLPADDRERIECVVRH
SPFGTVERLETRLNETAEQLGEDELDMITSNRDGELRQRFRLLATRANVD
TANAYDAAVELHTFLRSSADIHMTLEDVLHEVVQELDNEGRITSVGFLRA
YSELGLRHRTNSERAVPRELRERFMAAVAPNSKLPVVVAKHILKVLFFES
GRRSMGRSASSSRLSFRRVETEWDEEHVAALFEEISGSESTVNEAMFVEV
SMKVLFQMQ*

spliced messenger RNA

>Gcaud1146.t1 ID=Gcaud1146.t1|Name=Gcaud1146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:6441..8420- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCATCTCAACATGGCGATCAATCTCAGGCTAATGCTCTCTTGTT
ACAGGCGGCGAGAGAAGGACAGCTTCTGGGTTACATAACTGCAATGGTGC
ACGCAAATATCGAACACGACGATGAAAACGGCGATACTGCTCTCATCATC
GCAGCTGGCGAGGGACATTTGCGAATTGTGGAACAGTTGTTGGTTTCAGG
AGCTCGTGTGGATCATGAAAACAGAGATGGTTTCACTGCTCTCCTTTCGT
CTGCAAGGAATGGTCACTTGAAGGTCGTCGAGGAACTGTTACAGAAGAAT
GCTTCTGCGTTACACCGCTGTAGAAATGGAAACAACGCTCTTCATTATGC
AGTGCTGGGTGGTCATGACGATGTCGCGAGAGAACTCCTTAGGCATGGTG
CCGATCCAAGCCAGCCGAACAATGGCGGAGAACCCGCTGGTGCCCTAATT
TCCCGGGGTAGCGCTCTATTCTCTGAATTCGCCATTCATCAGCAATATGA
AAAATTGGCTGAAACTTGGCGCCGTGCATTGGATGAAGGTATCACAAGAG
AACAACTACTCTCGTTGTTACAGAGCTCATACCTTATCAGTTCTTTTGAA
TCATTTCTTCTCACACACAACCTCTTGCTTCTATCGATAAGACAAGGTGT
GGTTGGCATGGCGGAGGCAAGCATGTTTCAGGGAAATCGCGACTTCTTGT
TAGAGAGAATATACCTTCCGGTTTCCAGACTTGATCTTTCCCCATCAGAA
AGGTTTTTTGTCTGGCGAATCGTGCATCACGCAGAAGAACTTAGTCTCAT
TCAAAACGGCCATGGTGCCATGGTGAGACTGGCTGCGGAAATGCGATCCG
AGATTCGAGAGAACAGACAGCAGTTGCAATCTGAACTCATCTGTATCGTG
CGTAAGATAGGCTCCCTCGATGAAAGGGTAAATAGGCTGGAAGACTGGGC
AGCGGAATTCGAGAATGAGTTTGGGCGCTTATGCAACAACCAGTCGCTGC
TCCTTGACGATATGAAGCGAATGAATGTCAGTCTTCATCAATTACACAGT
AATCTACAGAGAACTGAAAAGTATAGGAAGTACTCCGCTATCGTCAGTCT
CGTTCTGGCTGCTGTTCCTGTGGTGGGCGGTGTACTGGGTGGGGCTTCCG
CTTTCTGCTCGGAACTTTTGCTAGGCTTCAATGCTGAGGACATGTTTGCA
GGCGCCTCTGCCGTAGCAGAGCAAACCAGTCCTAGTTTTGCGGAAGTTGA
CTTGAGCAACTTCCGGATTGCTGGTGCCTTAGTGAGCCGGTCCTACCTCG
CTCTACTCCCAGCAGATGATCGAGAACGTATAGAATGCGTGGTGAGACAC
AGCCCGTTTGGAACCGTGGAAAGATTGGAAACTCGCTTGAACGAAACTGC
TGAACAACTAGGAGAGGATGAATTGGACATGATAACGTCGAACAGAGATG
GAGAACTACGACAGCGTTTTCGACTTCTCGCGACCAGAGCAAATGTGGAC
ACTGCAAATGCTTATGATGCAGCAGTGGAGTTACACACGTTTCTTCGTAG
CAGTGCTGACATTCACATGACTTTGGAGGATGTGTTGCATGAGGTGGTTC
AAGAACTGGACAATGAAGGTCGAATAACCTCTGTGGGATTCTTACGGGCA
TATTCAGAATTAGGACTAAGACATCGAACTAACTCCGAACGTGCAGTTCC
GCGTGAGCTCCGGGAACGCTTCATGGCAGCGGTAGCACCCAATTCTAAGT
TACCAGTCGTGGTCGCCAAGCATATTTTGAAGGTTCTATTTTTTGAATCT
GGTAGACGATCTATGGGAAGGAGTGCATCATCTTCACGACTTTCATTTAG
AAGAGTGGAGACAGAGTGGGACGAAGAACATGTGGCAGCATTATTTGAAG
AGATATCTGGCAGCGAATCAACGGTGAATGAAGCCATGTTCGTGGAAGTG
AGCATGAAGGTGTTGTTTCAGATGCAGTAG

protein sequence of Gcaud1146.t1

>Gcaud1146.t1 ID=Gcaud1146.t1|Name=Gcaud1146.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=660bp
MDASQHGDQSQANALLLQAAREGQLLGYITAMVHANIEHDDENGDTALII
AAGEGHLRIVEQLLVSGARVDHENRDGFTALLSSARNGHLKVVEELLQKN
ASALHRCRNGNNALHYAVLGGHDDVARELLRHGADPSQPNNGGEPAGALI
SRGSALFSEFAIHQQYEKLAETWRRALDEGITREQLLSLLQSSYLISSFE
SFLLTHNLLLLSIRQGVVGMAEASMFQGNRDFLLERIYLPVSRLDLSPSE
RFFVWRIVHHAEELSLIQNGHGAMVRLAAEMRSEIRENRQQLQSELICIV
RKIGSLDERVNRLEDWAAEFENEFGRLCNNQSLLLDDMKRMNVSLHQLHS
NLQRTEKYRKYSAIVSLVLAAVPVVGGVLGGASAFCSELLLGFNAEDMFA
GASAVAEQTSPSFAEVDLSNFRIAGALVSRSYLALLPADDRERIECVVRH
SPFGTVERLETRLNETAEQLGEDELDMITSNRDGELRQRFRLLATRANVD
TANAYDAAVELHTFLRSSADIHMTLEDVLHEVVQELDNEGRITSVGFLRA
YSELGLRHRTNSERAVPRELRERFMAAVAPNSKLPVVVAKHILKVLFFES
GRRSMGRSASSSRLSFRRVETEWDEEHVAALFEEISGSESTVNEAMFVEV
SMKVLFQMQ*

mRNA from alignment at NODE_339_length_29353_cov_5.285558:6441..8420-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1146.t1 ID=Gcaud1146.t1|Name=Gcaud1146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:6441..8420- (Gracilaria caudata M_176_S67 male)
ATGGATGCATCTCAACATGGCGATCAATCTCAGGCTAATGCTCTCTTGTT
ACAGGCGGCGAGAGAAGGACAGCTTCTGGGTTACATAACTGCAATGGTGC
ACGCAAATATCGAACACGACGATGAAAACGGCGATACTGCTCTCATCATC
GCAGCTGGCGAGGGACATTTGCGAATTGTGGAACAGTTGTTGGTTTCAGG
AGCTCGTGTGGATCATGAAAACAGAGATGGTTTCACTGCTCTCCTTTCGT
CTGCAAGGAATGGTCACTTGAAGGTCGTCGAGGAACTGTTACAGAAGAAT
GCTTCTGCGTTACACCGCTGTAGAAATGGAAACAACGCTCTTCATTATGC
AGTGCTGGGTGGTCATGACGATGTCGCGAGAGAACTCCTTAGGCATGGTG
CCGATCCAAGCCAGCCGAACAATGGCGGAGAACCCGCTGGTGCCCTAATT
TCCCGGGGTAGCGCTCTATTCTCTGAATTCGCCATTCATCAGCAATATGA
AAAATTGGCTGAAACTTGGCGCCGTGCATTGGATGAAGGTATCACAAGAG
AACAACTACTCTCGTTGTTACAGAGCTCATACCTTATCAGTTCTTTTGAA
TCATTTCTTCTCACACACAACCTCTTGCTTCTATCGATAAGACAAGGTGT
GGTTGGCATGGCGGAGGCAAGCATGTTTCAGGGAAATCGCGACTTCTTGT
TAGAGAGAATATACCTTCCGGTTTCCAGACTTGATCTTTCCCCATCAGAA
AGGTTTTTTGTCTGGCGAATCGTGCATCACGCAGAAGAACTTAGTCTCAT
TCAAAACGGCCATGGTGCCATGGTGAGACTGGCTGCGGAAATGCGATCCG
AGATTCGAGAGAACAGACAGCAGTTGCAATCTGAACTCATCTGTATCGTG
CGTAAGATAGGCTCCCTCGATGAAAGGGTAAATAGGCTGGAAGACTGGGC
AGCGGAATTCGAGAATGAGTTTGGGCGCTTATGCAACAACCAGTCGCTGC
TCCTTGACGATATGAAGCGAATGAATGTCAGTCTTCATCAATTACACAGT
AATCTACAGAGAACTGAAAAGTATAGGAAGTACTCCGCTATCGTCAGTCT
CGTTCTGGCTGCTGTTCCTGTGGTGGGCGGTGTACTGGGTGGGGCTTCCG
CTTTCTGCTCGGAACTTTTGCTAGGCTTCAATGCTGAGGACATGTTTGCA
GGCGCCTCTGCCGTAGCAGAGCAAACCAGTCCTAGTTTTGCGGAAGTTGA
CTTGAGCAACTTCCGGATTGCTGGTGCCTTAGTGAGCCGGTCCTACCTCG
CTCTACTCCCAGCAGATGATCGAGAACGTATAGAATGCGTGGTGAGACAC
AGCCCGTTTGGAACCGTGGAAAGATTGGAAACTCGCTTGAACGAAACTGC
TGAACAACTAGGAGAGGATGAATTGGACATGATAACGTCGAACAGAGATG
GAGAACTACGACAGCGTTTTCGACTTCTCGCGACCAGAGCAAATGTGGAC
ACTGCAAATGCTTATGATGCAGCAGTGGAGTTACACACGTTTCTTCGTAG
CAGTGCTGACATTCACATGACTTTGGAGGATGTGTTGCATGAGGTGGTTC
AAGAACTGGACAATGAAGGTCGAATAACCTCTGTGGGATTCTTACGGGCA
TATTCAGAATTAGGACTAAGACATCGAACTAACTCCGAACGTGCAGTTCC
GCGTGAGCTCCGGGAACGCTTCATGGCAGCGGTAGCACCCAATTCTAAGT
TACCAGTCGTGGTCGCCAAGCATATTTTGAAGGTTCTATTTTTTGAATCT
GGTAGACGATCTATGGGAAGGAGTGCATCATCTTCACGACTTTCATTTAG
AAGAGTGGAGACAGAGTGGGACGAAGAACATGTGGCAGCATTATTTGAAG
AGATATCTGGCAGCGAATCAACGGTGAATGAAGCCATGTTCGTGGAAGTG
AGCATGAAGGTGTTGTTTCAGATGCAGTAG

Coding sequence (CDS) from alignment at NODE_339_length_29353_cov_5.285558:6441..8420-

>Gcaud1146.t1 ID=Gcaud1146.t1|Name=Gcaud1146.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1980bp|location=Sequence derived from alignment at NODE_339_length_29353_cov_5.285558:6441..8420- (Gracilaria caudata M_176_S67 male)
ATGGATGCATCTCAACATGGCGATCAATCTCAGGCTAATGCTCTCTTGTT
ACAGGCGGCGAGAGAAGGACAGCTTCTGGGTTACATAACTGCAATGGTGC
ACGCAAATATCGAACACGACGATGAAAACGGCGATACTGCTCTCATCATC
GCAGCTGGCGAGGGACATTTGCGAATTGTGGAACAGTTGTTGGTTTCAGG
AGCTCGTGTGGATCATGAAAACAGAGATGGTTTCACTGCTCTCCTTTCGT
CTGCAAGGAATGGTCACTTGAAGGTCGTCGAGGAACTGTTACAGAAGAAT
GCTTCTGCGTTACACCGCTGTAGAAATGGAAACAACGCTCTTCATTATGC
AGTGCTGGGTGGTCATGACGATGTCGCGAGAGAACTCCTTAGGCATGGTG
CCGATCCAAGCCAGCCGAACAATGGCGGAGAACCCGCTGGTGCCCTAATT
TCCCGGGGTAGCGCTCTATTCTCTGAATTCGCCATTCATCAGCAATATGA
AAAATTGGCTGAAACTTGGCGCCGTGCATTGGATGAAGGTATCACAAGAG
AACAACTACTCTCGTTGTTACAGAGCTCATACCTTATCAGTTCTTTTGAA
TCATTTCTTCTCACACACAACCTCTTGCTTCTATCGATAAGACAAGGTGT
GGTTGGCATGGCGGAGGCAAGCATGTTTCAGGGAAATCGCGACTTCTTGT
TAGAGAGAATATACCTTCCGGTTTCCAGACTTGATCTTTCCCCATCAGAA
AGGTTTTTTGTCTGGCGAATCGTGCATCACGCAGAAGAACTTAGTCTCAT
TCAAAACGGCCATGGTGCCATGGTGAGACTGGCTGCGGAAATGCGATCCG
AGATTCGAGAGAACAGACAGCAGTTGCAATCTGAACTCATCTGTATCGTG
CGTAAGATAGGCTCCCTCGATGAAAGGGTAAATAGGCTGGAAGACTGGGC
AGCGGAATTCGAGAATGAGTTTGGGCGCTTATGCAACAACCAGTCGCTGC
TCCTTGACGATATGAAGCGAATGAATGTCAGTCTTCATCAATTACACAGT
AATCTACAGAGAACTGAAAAGTATAGGAAGTACTCCGCTATCGTCAGTCT
CGTTCTGGCTGCTGTTCCTGTGGTGGGCGGTGTACTGGGTGGGGCTTCCG
CTTTCTGCTCGGAACTTTTGCTAGGCTTCAATGCTGAGGACATGTTTGCA
GGCGCCTCTGCCGTAGCAGAGCAAACCAGTCCTAGTTTTGCGGAAGTTGA
CTTGAGCAACTTCCGGATTGCTGGTGCCTTAGTGAGCCGGTCCTACCTCG
CTCTACTCCCAGCAGATGATCGAGAACGTATAGAATGCGTGGTGAGACAC
AGCCCGTTTGGAACCGTGGAAAGATTGGAAACTCGCTTGAACGAAACTGC
TGAACAACTAGGAGAGGATGAATTGGACATGATAACGTCGAACAGAGATG
GAGAACTACGACAGCGTTTTCGACTTCTCGCGACCAGAGCAAATGTGGAC
ACTGCAAATGCTTATGATGCAGCAGTGGAGTTACACACGTTTCTTCGTAG
CAGTGCTGACATTCACATGACTTTGGAGGATGTGTTGCATGAGGTGGTTC
AAGAACTGGACAATGAAGGTCGAATAACCTCTGTGGGATTCTTACGGGCA
TATTCAGAATTAGGACTAAGACATCGAACTAACTCCGAACGTGCAGTTCC
GCGTGAGCTCCGGGAACGCTTCATGGCAGCGGTAGCACCCAATTCTAAGT
TACCAGTCGTGGTCGCCAAGCATATTTTGAAGGTTCTATTTTTTGAATCT
GGTAGACGATCTATGGGAAGGAGTGCATCATCTTCACGACTTTCATTTAG
AAGAGTGGAGACAGAGTGGGACGAAGAACATGTGGCAGCATTATTTGAAG
AGATATCTGGCAGCGAATCAACGGTGAATGAAGCCATGTTCGTGGAAGTG
AGCATGAAGGTGTTGTTTCAGATGCAGTAG