Gcaud1142.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1142.t1
Unique Name	Gcaud1142.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	150

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2830_length_4613_cov_6.857806	contig	NODE_2830_length_4613_cov_6.857806:3003..3452 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707909.1
Preferred name	acl1
PFAMs	ATP-grasp_2,Citrate_bind,Citrate_synt,CoA_binding,Ligase_CoA
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00067
KEGG ko	ko:K01648
KEGG Reaction	R00352
KEGG Pathway	ko00020,ko00720,ko01100,ko01110,ko01120,ko01130,map00020,map00720,map01100,map01110,map01120,map01130
GOs	GO:0003674,GO:0003824,GO:0003878,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006084,GO:0006085,GO:0006091,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009346,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046394,GO:0046483,GO:0046912,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072330,GO:0072350,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	7.19e-60
EggNOG OGs	COG0045@1\|root,KOG1254@2759\|Eukaryota
EC	2.3.3.8
Description	ATP citrate synthase activity
COG category	C
BRITE	ko00000,ko00001,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1142	Gcaud1142	Gracilaria caudata M_176_S67 male	gene	NODE_2830_length_4613_cov_6.857806 3003..3452 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1142.t1.start1	Gcaud1142.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2830_length_4613_cov_6.857806 3003..3005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1142.t1.CDS1	Gcaud1142.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2830_length_4613_cov_6.857806 3003..3452 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1142.t1.exon1	Gcaud1142.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2830_length_4613_cov_6.857806 3003..3452 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1142.t1.stop1	Gcaud1142.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2830_length_4613_cov_6.857806 3450..3452 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1142.t1	Gcaud1142.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2830_length_4613_cov_6.857806 3003..3452 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2830_length_4613_cov_6.857806:3003..3452+
coding sequence from alignment at NODE_2830_length_4613_cov_6.857806:3003..3452+

mRNA sequence

>Gcaud1142.t1 ID=Gcaud1142.t1|Name=Gcaud1142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=150bp
MVARGGASVIYADQVVQLGYGDELGNYAEYSGNPKEQETYLYARTFLGLV
TKNVDGGRRALLCGGLVANFSDIAATLGGLQQVLTDLHGKLQMANVKVFV
RRGGPNHKAGLQLMRDLGNTLDIYIEVYEPETNMTHIVSLGIRWIEQGY*

spliced messenger RNA

>Gcaud1142.t1 ID=Gcaud1142.t1|Name=Gcaud1142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp|location=Sequence derived from alignment at NODE_2830_length_4613_cov_6.857806:3003..3452+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCAGAGGTGGAGCCTCTGTCATATATGCAGATCAAGTTGTTCA
ACTTGGCTACGGTGATGAGCTCGGCAATTATGCCGAATATTCTGGCAATC
CAAAAGAACAAGAGACTTACTTGTACGCCAGGACGTTTTTGGGGCTCGTA
ACAAAAAATGTAGATGGAGGCCGTCGTGCGTTATTGTGCGGAGGTCTTGT
AGCTAATTTCAGTGATATTGCAGCTACGCTTGGAGGTTTACAACAAGTTT
TAACTGACCTTCATGGAAAGCTACAGATGGCAAACGTTAAGGTGTTCGTT
CGACGCGGGGGCCCCAATCATAAGGCTGGTCTTCAACTCATGAGGGATCT
TGGAAATACACTTGATATTTATATCGAGGTTTACGAACCCGAGACAAACA
TGACTCATATTGTTTCTCTTGGCATTCGATGGATTGAACAGGGTTACTAA

protein sequence of Gcaud1142.t1

>Gcaud1142.t1 ID=Gcaud1142.t1|Name=Gcaud1142.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=150bp
MVARGGASVIYADQVVQLGYGDELGNYAEYSGNPKEQETYLYARTFLGLV
TKNVDGGRRALLCGGLVANFSDIAATLGGLQQVLTDLHGKLQMANVKVFV
RRGGPNHKAGLQLMRDLGNTLDIYIEVYEPETNMTHIVSLGIRWIEQGY*

mRNA from alignment at NODE_2830_length_4613_cov_6.857806:3003..3452+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1142.t1 ID=Gcaud1142.t1|Name=Gcaud1142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp|location=Sequence derived from alignment at NODE_2830_length_4613_cov_6.857806:3003..3452+ (Gracilaria caudata M_176_S67 male)
ATGGTTGCCAGAGGTGGAGCCTCTGTCATATATGCAGATCAAGTTGTTCA
ACTTGGCTACGGTGATGAGCTCGGCAATTATGCCGAATATTCTGGCAATC
CAAAAGAACAAGAGACTTACTTGTACGCCAGGACGTTTTTGGGGCTCGTA
ACAAAAAATGTAGATGGAGGCCGTCGTGCGTTATTGTGCGGAGGTCTTGT
AGCTAATTTCAGTGATATTGCAGCTACGCTTGGAGGTTTACAACAAGTTT
TAACTGACCTTCATGGAAAGCTACAGATGGCAAACGTTAAGGTGTTCGTT
CGACGCGGGGGCCCCAATCATAAGGCTGGTCTTCAACTCATGAGGGATCT
TGGAAATACACTTGATATTTATATCGAGGTTTACGAACCCGAGACAAACA
TGACTCATATTGTTTCTCTTGGCATTCGATGGATTGAACAGGGTTACTAA

Coding sequence (CDS) from alignment at NODE_2830_length_4613_cov_6.857806:3003..3452+

>Gcaud1142.t1 ID=Gcaud1142.t1|Name=Gcaud1142.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=450bp|location=Sequence derived from alignment at NODE_2830_length_4613_cov_6.857806:3003..3452+ (Gracilaria caudata M_176_S67 male)
ATGGTTGCCAGAGGTGGAGCCTCTGTCATATATGCAGATCAAGTTGTTCA
ACTTGGCTACGGTGATGAGCTCGGCAATTATGCCGAATATTCTGGCAATC
CAAAAGAACAAGAGACTTACTTGTACGCCAGGACGTTTTTGGGGCTCGTA
ACAAAAAATGTAGATGGAGGCCGTCGTGCGTTATTGTGCGGAGGTCTTGT
AGCTAATTTCAGTGATATTGCAGCTACGCTTGGAGGTTTACAACAAGTTT
TAACTGACCTTCATGGAAAGCTACAGATGGCAAACGTTAAGGTGTTCGTT
CGACGCGGGGGCCCCAATCATAAGGCTGGTCTTCAACTCATGAGGGATCT
TGGAAATACACTTGATATTTATATCGAGGTTTACGAACCCGAGACAAACA
TGACTCATATTGTTTCTCTTGGCATTCGATGGATTGAACAGGGTTACTAA