Gcaud1140.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1140.t1
Unique NameGcaud1140.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1559_length_9759_cov_4.302338contigNODE_1559_length_9759_cov_4.302338:3511..5668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1140Gcaud1140Gracilaria caudata M_176_S67 malegeneNODE_1559_length_9759_cov_4.302338 3511..5668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1140.t1Gcaud1140.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1559_length_9759_cov_4.302338 3511..5668 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1140.t1.start1Gcaud1140.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1559_length_9759_cov_4.302338 3511..3513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1140.t1.CDS1Gcaud1140.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1559_length_9759_cov_4.302338 3511..4523 +
Gcaud1140.t1.CDS2Gcaud1140.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1559_length_9759_cov_4.302338 5501..5530 +
Gcaud1140.t1.CDS3Gcaud1140.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1559_length_9759_cov_4.302338 5584..5668 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1140.t1.exon1Gcaud1140.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1559_length_9759_cov_4.302338 3511..4523 +
Gcaud1140.t1.exon2Gcaud1140.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1559_length_9759_cov_4.302338 5501..5530 +
Gcaud1140.t1.exon3Gcaud1140.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1559_length_9759_cov_4.302338 5584..5668 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1140.t1.intron1Gcaud1140.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1559_length_9759_cov_4.302338 4524..5500 +
Gcaud1140.t1.intron2Gcaud1140.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1559_length_9759_cov_4.302338 5531..5583 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1140.t1.stop1Gcaud1140.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1559_length_9759_cov_4.302338 5666..5668 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1140.t1 ID=Gcaud1140.t1|Name=Gcaud1140.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=376bp
MRLTFHLLILNNSNDSVLASEISQTQLRLPHVRPLIRQLYYMDVSVRCIY
ELHHWEVESCALEHFVQTQLHIRFHTLQTIRYHPAPSIRLTQQSYEPQVM
VLGVAETMEPLYPPLRWVKRSQLSDYQWGRVLDGVDVKSQIHTVLECINR
NPLVTHSAPWFWHGCVEAMQSWVRRELAAQQLLPVVPFQLICSTGEVCVF
KCRVSRIARADKHGRTRSSKFDVFVKAVRSPSQEPYRVAAIASLLPKFVP
HVIAIHGKHNAMIQKSAGTPLDASTDPCALIQTLAQLHISSLSHIAKLKA
SGLPVLDSYWFSAKFDSIMHHPALLCMESYADVQQDISPDFDLQKRQFFV
LESCIAGCFMGEPCHTPPGKSDRQT*
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spliced messenger RNA

>Gcaud1140.t1 ID=Gcaud1140.t1|Name=Gcaud1140.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_1559_length_9759_cov_4.302338:3511..5668+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACTCACCTTTCACCTGCTCATTCTCAACAACAGCAACGATTCTGT
CCTTGCTTCCGAAATCTCTCAAACCCAACTTCGTCTCCCTCATGTCCGCC
CGCTCATTCGTCAACTGTACTACATGGATGTGTCCGTCCGTTGTATATAT
GAACTTCATCATTGGGAAGTCGAATCATGTGCGCTGGAGCACTTTGTACA
AACACAACTTCACATTCGCTTCCACACCTTGCAAACTATTCGATATCACC
CTGCACCATCTATCCGTCTAACTCAACAGTCGTACGAGCCACAGGTCATG
GTCCTTGGCGTCGCCGAAACCATGGAACCGTTGTATCCGCCATTGCGATG
GGTTAAGCGAAGCCAGCTTTCTGACTACCAGTGGGGGCGCGTTCTGGACG
GTGTCGATGTCAAGTCTCAAATCCATACCGTCCTCGAATGCATCAACCGC
AATCCGCTCGTCACTCACTCCGCCCCGTGGTTTTGGCATGGTTGCGTCGA
AGCCATGCAGTCTTGGGTTCGTCGAGAGCTCGCAGCACAACAGCTGCTTC
CAGTCGTGCCGTTCCAGCTTATATGCAGCACCGGTGAAGTCTGTGTGTTT
AAATGCAGAGTATCACGCATAGCTCGAGCTGACAAACATGGACGAACTCG
TTCTTCTAAGTTTGATGTGTTTGTAAAAGCAGTGCGCTCTCCAAGTCAAG
AACCCTACCGCGTTGCCGCTATAGCAAGCTTGCTTCCAAAATTTGTGCCT
CACGTCATTGCTATTCATGGGAAACACAATGCCATGATTCAGAAAAGTGC
TGGAACTCCTCTGGACGCTTCCACGGATCCGTGTGCCTTAATCCAAACAC
TCGCCCAACTTCACATCTCGTCATTGAGTCACATTGCCAAGCTCAAGGCA
TCTGGTCTTCCAGTTCTGGATAGCTACTGGTTCAGCGCCAAATTTGATTC
CATCATGCATCATCCGGCGCTACTGTGCATGGAGTCTTATGCAGATGTCC
AACAAGACATCAGTCCAGATTTCGATCTCCAAAAGAGACAATTCTTCGTC
TTGGAATCCTGCATTGCTGGTTGCTTCATGGGCGAACCCTGCCATACTCC
CCCAGGAAAAAGTGATAGGCAGACATAA
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protein sequence of Gcaud1140.t1

>Gcaud1140.t1 ID=Gcaud1140.t1|Name=Gcaud1140.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=376bp
MRLTFHLLILNNSNDSVLASEISQTQLRLPHVRPLIRQLYYMDVSVRCIY
ELHHWEVESCALEHFVQTQLHIRFHTLQTIRYHPAPSIRLTQQSYEPQVM
VLGVAETMEPLYPPLRWVKRSQLSDYQWGRVLDGVDVKSQIHTVLECINR
NPLVTHSAPWFWHGCVEAMQSWVRRELAAQQLLPVVPFQLICSTGEVCVF
KCRVSRIARADKHGRTRSSKFDVFVKAVRSPSQEPYRVAAIASLLPKFVP
HVIAIHGKHNAMIQKSAGTPLDASTDPCALIQTLAQLHISSLSHIAKLKA
SGLPVLDSYWFSAKFDSIMHHPALLCMESYADVQQDISPDFDLQKRQFFV
LESCIAGCFMGEPCHTPPGKSDRQT*
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mRNA from alignment at NODE_1559_length_9759_cov_4.302338:3511..5668+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1140.t1 ID=Gcaud1140.t1|Name=Gcaud1140.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2158bp|location=Sequence derived from alignment at NODE_1559_length_9759_cov_4.302338:3511..5668+ (Gracilaria caudata M_176_S67 male)
ATGCGACTCACCTTTCACCTGCTCATTCTCAACAACAGCAACGATTCTGT
CCTTGCTTCCGAAATCTCTCAAACCCAACTTCGTCTCCCTCATGTCCGCC
CGCTCATTCGTCAACTGTACTACATGGATGTGTCCGTCCGTTGTATATAT
GAACTTCATCATTGGGAAGTCGAATCATGTGCGCTGGAGCACTTTGTACA
AACACAACTTCACATTCGCTTCCACACCTTGCAAACTATTCGATATCACC
CTGCACCATCTATCCGTCTAACTCAACAGTCGTACGAGCCACAGGTCATG
GTCCTTGGCGTCGCCGAAACCATGGAACCGTTGTATCCGCCATTGCGATG
GGTTAAGCGAAGCCAGCTTTCTGACTACCAGTGGGGGCGCGTTCTGGACG
GTGTCGATGTCAAGTCTCAAATCCATACCGTCCTCGAATGCATCAACCGC
AATCCGCTCGTCACTCACTCCGCCCCGTGGTTTTGGCATGGTTGCGTCGA
AGCCATGCAGTCTTGGGTTCGTCGAGAGCTCGCAGCACAACAGCTGCTTC
CAGTCGTGCCGTTCCAGCTTATATGCAGCACCGGTGAAGTCTGTGTGTTT
AAATGCAGAGTATCACGCATAGCTCGAGCTGACAAACATGGACGAACTCG
TTCTTCTAAGTTTGATGTGTTTGTAAAAGCAGTGCGCTCTCCAAGTCAAG
AACCCTACCGCGTTGCCGCTATAGCAAGCTTGCTTCCAAAATTTGTGCCT
CACGTCATTGCTATTCATGGGAAACACAATGCCATGATTCAGAAAAGTGC
TGGAACTCCTCTGGACGCTTCCACGGATCCGTGTGCCTTAATCCAAACAC
TCGCCCAACTTCACATCTCGTCATTGAGTCACATTGCCAAGCTCAAGGCA
TCTGGTCTTCCAGTTCTGGATAGCTACTGGTTCAGCGCCAAATTTGATTC
CATCATGCATCATCCGGCGCTACTGTGCATGGAGTCTTATGCAGATGTCC
AACAAGACATCAGGTATATCCGCGCCAACTCAGCACTAGTCCGAGAGTTG
TGCGACGagatttcaaaggtgtccgttcctcattctttggttcatggtga
tttgaaagtacacaatatcgccttcaagaagagcagttcgggacaacaat
acaggttcttcgattggggttcatcgttcataggccacccgttttACGAT
TTGCGAACTCTTTTAGAAGACGAGCGGAACCGGTCGTTGATAAACATGGC
TGACGACAGATTAGATTGTAATTCTGAAGAGTCGTATGTCGTTCAGTACT
TGTCAGCCTGGAAGTCGAACGGAACTGTGGCGGATTTGAAGAATGTGTAC
GACTTGATGGACATATTACGGCACGGGATTGAACTTTACAGATTAACTCA
ACTATACGAAAATTATAACGGCATAGAACGTAGAAAGCTCATACCTCGAA
TCCACTCGGAGATCAGAGGTTTACGCATCATGATCGAGGAATTTGCAACT
TGCACAGCAACATCTAGCTTTTAGCGCTCCGTATTATACTAACACCCCGA
GAATTCATGAGCCGCTCTGTCTAACAGCACAACAACCCATTCTTTCATGA
ATTGACCAGCTTCTGTGAACGCAGAACTGTTCTCTAGATTGTCTTCCAAC
CTAAAGACTTGGTTCTGCATGGACCGCGATCTAAAGCTATCATGTCTACC
ACTCCTTTCCTCAAAACTAGACGAACACAACTACGCGGCTGATTGGAGCA
TTAATAGCCACCGAGATTTAATTTGCGACAGAAGCGTCAGAAGGAGGGTA
CTACACTAGACTATATTCTTTCCCACCTGGGTATAAACTTATGTCAGATA
AATATTACCGGAGGACATAACCGCCGATAAAGCATTTTATAACACATTTG
CTCGCAAGGCAAAAGTTATGAAATTTGCCACTCGTAATCTTGTGAGCACC
AGTGATACCTGGGAACTATTCTGTGTGTGTGGGGGAGCAGTCCAGATTTC
GATCTCCAAAAGAGACAATTGTAAGTTACTTTTCCTCCTGAGAGAAAATG
CGATGACTGCTAAACTGGCTCAGCTTCGTCTTGGAATCCTGCATTGCTGG
TTGCTTCATGGGCGAACCCTGCCATACTCCCCCAGGAAAAAGTGATAGGC
AGACATAA
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Coding sequence (CDS) from alignment at NODE_1559_length_9759_cov_4.302338:3511..5668+

>Gcaud1140.t1 ID=Gcaud1140.t1|Name=Gcaud1140.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1128bp|location=Sequence derived from alignment at NODE_1559_length_9759_cov_4.302338:3511..5668+ (Gracilaria caudata M_176_S67 male)
ATGCGACTCACCTTTCACCTGCTCATTCTCAACAACAGCAACGATTCTGT
CCTTGCTTCCGAAATCTCTCAAACCCAACTTCGTCTCCCTCATGTCCGCC
CGCTCATTCGTCAACTGTACTACATGGATGTGTCCGTCCGTTGTATATAT
GAACTTCATCATTGGGAAGTCGAATCATGTGCGCTGGAGCACTTTGTACA
AACACAACTTCACATTCGCTTCCACACCTTGCAAACTATTCGATATCACC
CTGCACCATCTATCCGTCTAACTCAACAGTCGTACGAGCCACAGGTCATG
GTCCTTGGCGTCGCCGAAACCATGGAACCGTTGTATCCGCCATTGCGATG
GGTTAAGCGAAGCCAGCTTTCTGACTACCAGTGGGGGCGCGTTCTGGACG
GTGTCGATGTCAAGTCTCAAATCCATACCGTCCTCGAATGCATCAACCGC
AATCCGCTCGTCACTCACTCCGCCCCGTGGTTTTGGCATGGTTGCGTCGA
AGCCATGCAGTCTTGGGTTCGTCGAGAGCTCGCAGCACAACAGCTGCTTC
CAGTCGTGCCGTTCCAGCTTATATGCAGCACCGGTGAAGTCTGTGTGTTT
AAATGCAGAGTATCACGCATAGCTCGAGCTGACAAACATGGACGAACTCG
TTCTTCTAAGTTTGATGTGTTTGTAAAAGCAGTGCGCTCTCCAAGTCAAG
AACCCTACCGCGTTGCCGCTATAGCAAGCTTGCTTCCAAAATTTGTGCCT
CACGTCATTGCTATTCATGGGAAACACAATGCCATGATTCAGAAAAGTGC
TGGAACTCCTCTGGACGCTTCCACGGATCCGTGTGCCTTAATCCAAACAC
TCGCCCAACTTCACATCTCGTCATTGAGTCACATTGCCAAGCTCAAGGCA
TCTGGTCTTCCAGTTCTGGATAGCTACTGGTTCAGCGCCAAATTTGATTC
CATCATGCATCATCCGGCGCTACTGTGCATGGAGTCTTATGCAGATGTCC
AACAAGACATCAGTCCAGATTTCGATCTCCAAAAGAGACAATTCTTCGTC
TTGGAATCCTGCATTGCTGGTTGCTTCATGGGCGAACCCTGCCATACTCC
CCCAGGAAAAAGTGATAGGCAGACATAA
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