Gcaud1116.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1116.t1
Unique NameGcaud1116.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_495_length_23741_cov_4.331670contigNODE_495_length_23741_cov_4.331670:22298..23350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706832.1
Preferred nameVDAC2
PFAMsPorin_3
Max annot lvl2759|Eukaryota
KEGG rclassRC00588
KEGG koko:K02552,ko:K05862,ko:K13947,ko:K15040,ko:K15041
KEGG TC1.B.8.1,2.A.69.1
KEGG ReactionR01717
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,ko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05161,ko05164,ko05166,ko05203,map00130,map01053,map01100,map01110,map01130,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05161,map05164,map05166,map05203
KEGG ModuleM00116
GOsGO:0000003,GO:0001662,GO:0001669,GO:0002209,GO:0003006,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005757,GO:0005759,GO:0005773,GO:0005774,GO:0005783,GO:0005791,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006820,GO:0006839,GO:0006851,GO:0006863,GO:0006914,GO:0006915,GO:0006950,GO:0006952,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007270,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007338,GO:0007339,GO:0007349,GO:0007602,GO:0007610,GO:0007611,GO:0007612,GO:0008021,GO:0008037,GO:0008150,GO:0008152,GO:0008219,GO:0008308,GO:0008324,GO:0008509,GO:0009056,GO:0009060,GO:0009266,GO:0009295,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009566,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009888,GO:0009892,GO:0009894,GO:0009941,GO:0009966,GO:0009968,GO:0009987,GO:0009988,GO:0010029,GO:0010033,GO:0010506,GO:0010646,GO:0010648,GO:0010821,GO:0010941,GO:0012501,GO:0012505,GO:0015075,GO:0015085,GO:0015103,GO:0015267,GO:0015288,GO:0015318,GO:0015698,GO:0015851,GO:0015853,GO:0015931,GO:0015980,GO:0016006,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0019222,GO:0019725,GO:0019867,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022412,GO:0022414,GO:0022803,GO:0022829,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023057,GO:0030001,GO:0030133,GO:0030141,GO:0030154,GO:0030312,GO:0030382,GO:0030855,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031324,GO:0031329,GO:0031333,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032504,GO:0032592,GO:0032991,GO:0033043,GO:0033555,GO:0034220,GO:0035036,GO:0042170,GO:0042221,GO:0042592,GO:0042596,GO:0042645,GO:0042742,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044087,GO:0044237,GO:0044248,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044456,GO:0044464,GO:0044703,GO:0044877,GO:0045121,GO:0045202,GO:0045333,GO:0045454,GO:0046873,GO:0046930,GO:0048232,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050657,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051027,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051606,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0055114,GO:0060429,GO:0060548,GO:0061919,GO:0065007,GO:0065008,GO:0070013,GO:0070382,GO:0070588,GO:0070838,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0097223,GO:0097458,GO:0097708,GO:0098542,GO:0098573,GO:0098588,GO:0098589,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098793,GO:0098796,GO:0098798,GO:0098805,GO:0098857,GO:0098916,GO:0099503,GO:0099536,GO:0099537,GO:1900140,GO:1902531,GO:1902532,GO:1903146,GO:1990542,GO:2000026,GO:2000377,GO:2000378,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue2.91e-49
EggNOG OGsKOG3126@1|root,KOG3126@2759|Eukaryota
EC5.4.4.2
Descriptionporin activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1116Gcaud1116Gracilaria caudata M_176_S67 malegeneNODE_495_length_23741_cov_4.331670 22298..23350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1116.t1Gcaud1116.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_495_length_23741_cov_4.331670 22298..23350 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1116.t1.start1Gcaud1116.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_495_length_23741_cov_4.331670 22298..22300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1116.t1.CDS1Gcaud1116.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_495_length_23741_cov_4.331670 22298..22337 +
Gcaud1116.t1.CDS2Gcaud1116.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_495_length_23741_cov_4.331670 22503..23350 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1116.t1.exon1Gcaud1116.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_495_length_23741_cov_4.331670 22298..22337 +
Gcaud1116.t1.exon2Gcaud1116.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_495_length_23741_cov_4.331670 22503..23350 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1116.t1.intron1Gcaud1116.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_495_length_23741_cov_4.331670 22338..22502 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1116.t1.stop1Gcaud1116.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_495_length_23741_cov_4.331670 23348..23350 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1116.t1 ID=Gcaud1116.t1|Name=Gcaud1116.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=296bp
MVKLYKDLGKTAKKLLNDDFIYGEKKLQLKTKTASGMTYTTTGKLNSITQ
MVSIPQKEGEPKEVEQQIETLSGDLSCKYKLSGATMTTKLFTSGMLSQEM
ELDNTGVKGLKLNVLSKLGPKQSILATAEYIHPHLSLVAKADALDKPKVT
SSMTVGMHGITAGVQGTLNIESKEVTGVDAIVNYASGKEHEATVMVMDKG
QKAKFSYSHIRNSDFSVAAEFEYNRAKDSKELAMGTRYEVDRDTTLKTKI
TSVGSFSVSYIQEIRSNTTLTICSHFNVIGDKKPNHRFGLALVIE*
back to top

spliced messenger RNA

>Gcaud1116.t1 ID=Gcaud1116.t1|Name=Gcaud1116.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:22298..23350+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAGCTCTATAAAGATCTTGGCAAAACTGCCAAGAAACTACTCAA
CGATGATTTCATCTACGGCGAAAAGAAGCTCCAACTCAAGACCAAGACCG
CCAGTGGAATGACGTACACCACCACGGGCAAACTGAACTCCATCACCCAA
ATGGTGTCCATTCCGCAAAAAGAAGGCGAGCCCAAGGAGGTAGAGCAGCA
AATCGAAACTCTATCTGGTGATCTGAGCTGCAAGTACAAGCTTTCGGGCG
CCACCATGACTACTAAGCTGTTCACCAGTGGCATGCTGTCACAGGAGATG
GAACTAGACAACACGGGCGTTAAAGGTTTGAAACTGAACGTACTAAGCAA
ATTGGGGCCAAAGCAATCCATACTGGCCACCGCCGAATACATTCACCCGC
ACTTGTCGCTGGTGGCCAAGGCAGACGCGCTCGACAAGCCCAAAGTGACG
TCGTCGATGACGGTGGGCATGCACGGCATCACGGCTGGTGTGCAGGGCAC
TCTGAACATCGAGTCCAAGGAGGTGACGGGCGTGGACGCGATCGTGAACT
ACGCGAGCGGCAAGGAGCACGAGGCCACGGTGATGGTGATGGACAAGGGC
CAGAAGGCCAAGTTCTCATACTCGCACATCAGGAACAGTGATTTTTCGGT
GGCGGCCGAGTTTGAGTACAACCGAGCGAAGGACAGTAAGGAACTGGCGA
TGGGAACTAGGTACGAGGTGGACCGAGACACAACGCTCAAGACGAAGATC
ACGTCGGTAGGGTCGTTTTCGGTGAGCTACATTCAAGAAATCCGCAGCAA
CACCACGTTGACCATCTGCTCGCACTTCAACGTGATCGGGGACAAGAAGC
CCAACCACAGGTTCGGACTAGCGCTGGTGATCGAATGA
back to top

protein sequence of Gcaud1116.t1

>Gcaud1116.t1 ID=Gcaud1116.t1|Name=Gcaud1116.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=296bp
MVKLYKDLGKTAKKLLNDDFIYGEKKLQLKTKTASGMTYTTTGKLNSITQ
MVSIPQKEGEPKEVEQQIETLSGDLSCKYKLSGATMTTKLFTSGMLSQEM
ELDNTGVKGLKLNVLSKLGPKQSILATAEYIHPHLSLVAKADALDKPKVT
SSMTVGMHGITAGVQGTLNIESKEVTGVDAIVNYASGKEHEATVMVMDKG
QKAKFSYSHIRNSDFSVAAEFEYNRAKDSKELAMGTRYEVDRDTTLKTKI
TSVGSFSVSYIQEIRSNTTLTICSHFNVIGDKKPNHRFGLALVIE*
back to top

mRNA from alignment at NODE_495_length_23741_cov_4.331670:22298..23350+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1116.t1 ID=Gcaud1116.t1|Name=Gcaud1116.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:22298..23350+ (Gracilaria caudata M_176_S67 male)
ATGGTCAAGCTCTATAAAGATCTTGGCAAAACTGCCAAGAGTACGTTATG
TCGCCTCTTTTGCGCCACTATCGCATGGAGTGGTCGCCCCGATCGCGTGT
GGCGCTGATCCCTCTCTTGCGCCCGGGGCTCCCTTGAGCTGATCGTGTGT
ATCCGAAACTGCTTACTGACTTGTGCACTGTTCCTCTCGTTGGCGTGATG
CGCAGAACTACTCAACGATGATTTCATCTACGGCGAAAAGAAGCTCCAAC
TCAAGACCAAGACCGCCAGTGGAATGACGTACACCACCACGGGCAAACTG
AACTCCATCACCCAAATGGTGTCCATTCCGCAAAAAGAAGGCGAGCCCAA
GGAGGTAGAGCAGCAAATCGAAACTCTATCTGGTGATCTGAGCTGCAAGT
ACAAGCTTTCGGGCGCCACCATGACTACTAAGCTGTTCACCAGTGGCATG
CTGTCACAGGAGATGGAACTAGACAACACGGGCGTTAAAGGTTTGAAACT
GAACGTACTAAGCAAATTGGGGCCAAAGCAATCCATACTGGCCACCGCCG
AATACATTCACCCGCACTTGTCGCTGGTGGCCAAGGCAGACGCGCTCGAC
AAGCCCAAAGTGACGTCGTCGATGACGGTGGGCATGCACGGCATCACGGC
TGGTGTGCAGGGCACTCTGAACATCGAGTCCAAGGAGGTGACGGGCGTGG
ACGCGATCGTGAACTACGCGAGCGGCAAGGAGCACGAGGCCACGGTGATG
GTGATGGACAAGGGCCAGAAGGCCAAGTTCTCATACTCGCACATCAGGAA
CAGTGATTTTTCGGTGGCGGCCGAGTTTGAGTACAACCGAGCGAAGGACA
GTAAGGAACTGGCGATGGGAACTAGGTACGAGGTGGACCGAGACACAACG
CTCAAGACGAAGATCACGTCGGTAGGGTCGTTTTCGGTGAGCTACATTCA
AGAAATCCGCAGCAACACCACGTTGACCATCTGCTCGCACTTCAACGTGA
TCGGGGACAAGAAGCCCAACCACAGGTTCGGACTAGCGCTGGTGATCGAA
TGA
back to top

Coding sequence (CDS) from alignment at NODE_495_length_23741_cov_4.331670:22298..23350+

>Gcaud1116.t1 ID=Gcaud1116.t1|Name=Gcaud1116.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=888bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:22298..23350+ (Gracilaria caudata M_176_S67 male)
ATGGTCAAGCTCTATAAAGATCTTGGCAAAACTGCCAAGAAACTACTCAA
CGATGATTTCATCTACGGCGAAAAGAAGCTCCAACTCAAGACCAAGACCG
CCAGTGGAATGACGTACACCACCACGGGCAAACTGAACTCCATCACCCAA
ATGGTGTCCATTCCGCAAAAAGAAGGCGAGCCCAAGGAGGTAGAGCAGCA
AATCGAAACTCTATCTGGTGATCTGAGCTGCAAGTACAAGCTTTCGGGCG
CCACCATGACTACTAAGCTGTTCACCAGTGGCATGCTGTCACAGGAGATG
GAACTAGACAACACGGGCGTTAAAGGTTTGAAACTGAACGTACTAAGCAA
ATTGGGGCCAAAGCAATCCATACTGGCCACCGCCGAATACATTCACCCGC
ACTTGTCGCTGGTGGCCAAGGCAGACGCGCTCGACAAGCCCAAAGTGACG
TCGTCGATGACGGTGGGCATGCACGGCATCACGGCTGGTGTGCAGGGCAC
TCTGAACATCGAGTCCAAGGAGGTGACGGGCGTGGACGCGATCGTGAACT
ACGCGAGCGGCAAGGAGCACGAGGCCACGGTGATGGTGATGGACAAGGGC
CAGAAGGCCAAGTTCTCATACTCGCACATCAGGAACAGTGATTTTTCGGT
GGCGGCCGAGTTTGAGTACAACCGAGCGAAGGACAGTAAGGAACTGGCGA
TGGGAACTAGGTACGAGGTGGACCGAGACACAACGCTCAAGACGAAGATC
ACGTCGGTAGGGTCGTTTTCGGTGAGCTACATTCAAGAAATCCGCAGCAA
CACCACGTTGACCATCTGCTCGCACTTCAACGTGATCGGGGACAAGAAGC
CCAACCACAGGTTCGGACTAGCGCTGGTGATCGAATGA
back to top