Gcaud1113.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1113.t1
Unique Name	Gcaud1113.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_495_length_23741_cov_4.331670	contig	NODE_495_length_23741_cov_4.331670:15773..16792 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173029.JH980292_gene2325
PFAMs	EAL,GAF_2,GGDEF,PAS_3,PAS_9
Max annot lvl	1117\|Cyanobacteria
Evalue	1.36e-10
EggNOG OGs	COG5001@1\|root,COG5001@2\|Bacteria,1G0SY@1117\|Cyanobacteria,1H7V4@1150\|Oscillatoriales
Description	signal transduction protein containing a membrane domain an EAL and a GGDEF domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1113	Gcaud1113	Gracilaria caudata M_176_S67 male	gene	NODE_495_length_23741_cov_4.331670 15773..16792 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1113.t1.start1	Gcaud1113.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_495_length_23741_cov_4.331670 15773..15775 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1113.t1.CDS1	Gcaud1113.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_495_length_23741_cov_4.331670 15773..16792 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1113.t1.exon1	Gcaud1113.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_495_length_23741_cov_4.331670 15773..16792 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1113.t1.stop1	Gcaud1113.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_495_length_23741_cov_4.331670 16790..16792 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1113.t1	Gcaud1113.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_495_length_23741_cov_4.331670 15773..16792 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_495_length_23741_cov_4.331670:15773..16792+
coding sequence from alignment at NODE_495_length_23741_cov_4.331670:15773..16792+

mRNA sequence

>Gcaud1113.t1 ID=Gcaud1113.t1|Name=Gcaud1113.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=340bp
MQPHSSQPSISTDLAGTGSSPSHSKTLSTHPDSLAIARRRRDARRTRATI
GDQFEQLRRVLPRTPDGGQLTAKAQILEQALRVIKDLMSRATRLAVELAV
VSPQATRSWVSSVSDHGRRPLSSAVISVMKLFAARRNWRYAEWWTLDEKR
TTSEDEPFIDHERGVEADKPDGVIDHPANVHGCVVRDSTSVMRLGCTIIH
RTAEDELSTSGVGSEEDEKLTKFAQASQNYEFYPRMGIPGRVWTSQRAEW
LVDLANREAFIRSELAQEFGMKTCLAVPIKFGGHVHSVMAFYCTERRLCE
ADCLDLATLLVNCLEQVYSPSQVVSWQMGTESEFPSSPL*

spliced messenger RNA

>Gcaud1113.t1 ID=Gcaud1113.t1|Name=Gcaud1113.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:15773..16792+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCCACTCGTCACAGCCCAGCATATCAACAGACTTAGCTGGCAC
AGGCTCCTCACCCTCGCACTCCAAGACTTTGTCCACTCATCCAGATTCGC
TGGCGATAGCTCGCCGTCGACGAGATGCGCGACGAACGCGTGCCACCATT
GGCGACCAGTTTGAGCAGCTTCGCAGAGTGTTACCGCGCACGCCAGATGG
CGGACAGCTCACGGCGAAGGCTCAAATTCTCGAACAGGCGCTTCGAGTAA
TCAAAGACTTGATGAGTCGCGCTACTCGACTTGCGGTAGAGCTGGCGGTG
GTGTCGCCACAGGCAACGCGCTCATGGGTGTCTTCCGTGTCAGACCACGG
CAGACGTCCCTTGTCCAGCGCGGTGATCAGCGTAATGAAACTGTTTGCGG
CGCGTCGGAATTGGCGGTATGCGGAATGGTGGACTTTGGATGAAAAGAGA
ACGACGTCGGAAGATGAGCCGTTTATTGATCATGAGCGCGGCGTGGAAGC
CGACAAACCTGACGGGGTGATTGACCATCCAGCCAACGTGCACGGCTGCG
TGGTAAGGGACTCTACAAGCGTGATGAGACTGGGGTGCACTATTATTCAC
AGGACTGCGGAAGATGAACTGAGTACGAGTGGTGTAGGCTCAGAAGAAGA
CGAAAAACTGACCAAATTCGCACAAGCTTCGCAAAACTACGAGTTTTACC
CGCGCATGGGTATCCCAGGTCGCGTGTGGACGTCGCAGCGAGCGGAATGG
TTGGTTGACCTAGCCAACAGAGAAGCGTTCATCCGCTCGGAACTGGCGCA
GGAGTTCGGGATGAAGACGTGTCTGGCGGTGCCAATTAAGTTTGGGGGAC
ATGTGCATTCGGTGATGGCTTTCTACTGCACGGAGCGAAGACTTTGTGAG
GCGGATTGCTTGGATTTGGCCACCTTGTTGGTGAATTGCTTGGAGCAAGT
GTACTCGCCTAGTCAGGTGGTGTCGTGGCAGATGGGCACGGAGTCTGAGT
TCCCGTCGTCACCGCTTTAG

protein sequence of Gcaud1113.t1

>Gcaud1113.t1 ID=Gcaud1113.t1|Name=Gcaud1113.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=340bp
MQPHSSQPSISTDLAGTGSSPSHSKTLSTHPDSLAIARRRRDARRTRATI
GDQFEQLRRVLPRTPDGGQLTAKAQILEQALRVIKDLMSRATRLAVELAV
VSPQATRSWVSSVSDHGRRPLSSAVISVMKLFAARRNWRYAEWWTLDEKR
TTSEDEPFIDHERGVEADKPDGVIDHPANVHGCVVRDSTSVMRLGCTIIH
RTAEDELSTSGVGSEEDEKLTKFAQASQNYEFYPRMGIPGRVWTSQRAEW
LVDLANREAFIRSELAQEFGMKTCLAVPIKFGGHVHSVMAFYCTERRLCE
ADCLDLATLLVNCLEQVYSPSQVVSWQMGTESEFPSSPL*

mRNA from alignment at NODE_495_length_23741_cov_4.331670:15773..16792+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1113.t1 ID=Gcaud1113.t1|Name=Gcaud1113.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:15773..16792+ (Gracilaria caudata M_176_S67 male)
ATGCAGCCCCACTCGTCACAGCCCAGCATATCAACAGACTTAGCTGGCAC
AGGCTCCTCACCCTCGCACTCCAAGACTTTGTCCACTCATCCAGATTCGC
TGGCGATAGCTCGCCGTCGACGAGATGCGCGACGAACGCGTGCCACCATT
GGCGACCAGTTTGAGCAGCTTCGCAGAGTGTTACCGCGCACGCCAGATGG
CGGACAGCTCACGGCGAAGGCTCAAATTCTCGAACAGGCGCTTCGAGTAA
TCAAAGACTTGATGAGTCGCGCTACTCGACTTGCGGTAGAGCTGGCGGTG
GTGTCGCCACAGGCAACGCGCTCATGGGTGTCTTCCGTGTCAGACCACGG
CAGACGTCCCTTGTCCAGCGCGGTGATCAGCGTAATGAAACTGTTTGCGG
CGCGTCGGAATTGGCGGTATGCGGAATGGTGGACTTTGGATGAAAAGAGA
ACGACGTCGGAAGATGAGCCGTTTATTGATCATGAGCGCGGCGTGGAAGC
CGACAAACCTGACGGGGTGATTGACCATCCAGCCAACGTGCACGGCTGCG
TGGTAAGGGACTCTACAAGCGTGATGAGACTGGGGTGCACTATTATTCAC
AGGACTGCGGAAGATGAACTGAGTACGAGTGGTGTAGGCTCAGAAGAAGA
CGAAAAACTGACCAAATTCGCACAAGCTTCGCAAAACTACGAGTTTTACC
CGCGCATGGGTATCCCAGGTCGCGTGTGGACGTCGCAGCGAGCGGAATGG
TTGGTTGACCTAGCCAACAGAGAAGCGTTCATCCGCTCGGAACTGGCGCA
GGAGTTCGGGATGAAGACGTGTCTGGCGGTGCCAATTAAGTTTGGGGGAC
ATGTGCATTCGGTGATGGCTTTCTACTGCACGGAGCGAAGACTTTGTGAG
GCGGATTGCTTGGATTTGGCCACCTTGTTGGTGAATTGCTTGGAGCAAGT
GTACTCGCCTAGTCAGGTGGTGTCGTGGCAGATGGGCACGGAGTCTGAGT
TCCCGTCGTCACCGCTTTAG

Coding sequence (CDS) from alignment at NODE_495_length_23741_cov_4.331670:15773..16792+

>Gcaud1113.t1 ID=Gcaud1113.t1|Name=Gcaud1113.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1020bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:15773..16792+ (Gracilaria caudata M_176_S67 male)
ATGCAGCCCCACTCGTCACAGCCCAGCATATCAACAGACTTAGCTGGCAC
AGGCTCCTCACCCTCGCACTCCAAGACTTTGTCCACTCATCCAGATTCGC
TGGCGATAGCTCGCCGTCGACGAGATGCGCGACGAACGCGTGCCACCATT
GGCGACCAGTTTGAGCAGCTTCGCAGAGTGTTACCGCGCACGCCAGATGG
CGGACAGCTCACGGCGAAGGCTCAAATTCTCGAACAGGCGCTTCGAGTAA
TCAAAGACTTGATGAGTCGCGCTACTCGACTTGCGGTAGAGCTGGCGGTG
GTGTCGCCACAGGCAACGCGCTCATGGGTGTCTTCCGTGTCAGACCACGG
CAGACGTCCCTTGTCCAGCGCGGTGATCAGCGTAATGAAACTGTTTGCGG
CGCGTCGGAATTGGCGGTATGCGGAATGGTGGACTTTGGATGAAAAGAGA
ACGACGTCGGAAGATGAGCCGTTTATTGATCATGAGCGCGGCGTGGAAGC
CGACAAACCTGACGGGGTGATTGACCATCCAGCCAACGTGCACGGCTGCG
TGGTAAGGGACTCTACAAGCGTGATGAGACTGGGGTGCACTATTATTCAC
AGGACTGCGGAAGATGAACTGAGTACGAGTGGTGTAGGCTCAGAAGAAGA
CGAAAAACTGACCAAATTCGCACAAGCTTCGCAAAACTACGAGTTTTACC
CGCGCATGGGTATCCCAGGTCGCGTGTGGACGTCGCAGCGAGCGGAATGG
TTGGTTGACCTAGCCAACAGAGAAGCGTTCATCCGCTCGGAACTGGCGCA
GGAGTTCGGGATGAAGACGTGTCTGGCGGTGCCAATTAAGTTTGGGGGAC
ATGTGCATTCGGTGATGGCTTTCTACTGCACGGAGCGAAGACTTTGTGAG
GCGGATTGCTTGGATTTGGCCACCTTGTTGGTGAATTGCTTGGAGCAAGT
GTACTCGCCTAGTCAGGTGGTGTCGTGGCAGATGGGCACGGAGTCTGAGT
TCCCGTCGTCACCGCTTTAG