Gcaud1112.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1112.t1
Unique Name	Gcaud1112.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	748

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_495_length_23741_cov_4.331670	contig	NODE_495_length_23741_cov_4.331670:11914..14157 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708260.1
PFAMs	Methyltr_RsmB-F,zf-CCHC_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15334,ko:K15335
Evalue	2.06e-128
EggNOG OGs	COG0144@1\|root,KOG2198@2759\|Eukaryota
EC	2.1.1.202,2.1.1.203
Description	tRNA (cytosine-5-)-methyltransferase activity
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1112	Gcaud1112	Gracilaria caudata M_176_S67 male	gene	NODE_495_length_23741_cov_4.331670 11914..14157 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1112.t1.start1	Gcaud1112.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_495_length_23741_cov_4.331670 11914..11916 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1112.t1.CDS1	Gcaud1112.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_495_length_23741_cov_4.331670 11914..14157 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1112.t1.exon1	Gcaud1112.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_495_length_23741_cov_4.331670 11914..14157 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1112.t1.stop1	Gcaud1112.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_495_length_23741_cov_4.331670 14155..14157 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1112.t1	Gcaud1112.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_495_length_23741_cov_4.331670 11914..14157 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_495_length_23741_cov_4.331670:11914..14157+
coding sequence from alignment at NODE_495_length_23741_cov_4.331670:11914..14157+

mRNA sequence

>Gcaud1112.t1 ID=Gcaud1112.t1|Name=Gcaud1112.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=748bp
MPSPEEQTVEHPSLKKSLSRAPPKIDLPTKRRRKHGKPKIPRRDNRKSHF
DSDYTPDDGRKNEAFSEYYKMQNIVDKEDFESMLTTFAQPLPTSFRITAQ
GAFREDIHAALVGDISTLFRNVKSEDDSQQIKPPKPLLWYPEELAWTVSA
PRQLLRRDNALAPFHRFLVRMHALGAVNRQEAVSMIPPLLLDAQPGHAVL
DMCAAPGSKTAQILEHLSERGIPLSEPGLVIANDADIKRCWMLVHQLKRF
ASPQLVVTHHEAQHFPKFMAFDRVLCDVPCTGDGTLRKAPDIWRRWSPEM
GIGIHRLQRQILNRGIELLKPGGVLVYSTCSMNPLENEAVVAHALRTFGQ
DIQLIDCSQKLPELIRRPGLTTWLVKDTAYGMKPEQENQKRTGESRANDD
EVRNADSNHMNPNHSNGWFTSFEEVPPRRQKKVVSSLFPPSAEELSSGQF
PLQRCMRLVPHDQDTGAFFVAVLFKSELARLTRRQLRNEENCEQRESATG
DDVRDANGSEPANNDTKLSIPKKSGRGGTRLITDDPLVNVSDLCRKSLDN
ICSFFGLDSNIMEHCLMTRGTDGTTFKRVVAVSRTVRTVLRHSLGTRDKE
VMENKRELRVVNAGVRVLERTDRKDTTCHFRLIQEGAHIMRAIMKKRCVD
AEVSDVLRLLSENNIRRNSDEKLQNLFSLGSGSAMLCCGEREEAIIWIGK
QIINVVMPKEVVLAMQSQLRRILGEKPDLLALEANGDKDSAEKTDEE*

spliced messenger RNA

>Gcaud1112.t1 ID=Gcaud1112.t1|Name=Gcaud1112.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2244bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:11914..14157+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCGCCTGAGGAACAAACCGTGGAACATCCATCGCTCAAGAAATC
GCTTTCCCGCGCCCCACCAAAGATTGATCTACCAACAAAGAGACGCCGAA
AGCATGGGAAGCCAAAGATACCGCGGAGAGATAATCGTAAATCCCATTTT
GATTCCGATTACACCCCTGACGATGGTCGAAAGAATGAAGCTTTTAGTGA
GTACTACAAGATGCAGAACATTGTTGACAAGGAGGACTTTGAATCTATGC
TCACAACCTTTGCACAACCTCTTCCGACAAGCTTTCGGATAACGGCCCAA
GGAGCTTTTAGAGAGGATATTCACGCCGCGCTCGTAGGTGATATATCGAC
TCTGTTCCGAAATGTGAAATCCGAAGACGATTCCCAGCAGATTAAGCCAC
CAAAACCCCTTTTGTGGTATCCAGAAGAATTGGCGTGGACAGTCTCGGCT
CCTCGCCAGCTACTACGGCGGGACAATGCCTTAGCCCCCTTCCATCGTTT
TCTTGTCCGAATGCATGCCCTCGGTGCTGTTAACCGGCAAGAAGCGGTGA
GTATGATTCCTCCGCTCTTGTTAGATGCTCAACCTGGACATGCAGTATTA
GACATGTGCGCTGCTCCTGGCTCAAAAACTGCTCAAATACTCGAGCATCT
TTCAGAAAGGGGTATTCCCCTCTCCGAGCCTGGTTTGGTGATAGCCAATG
ATGCCGATATTAAACGATGTTGGATGCTTGTTCATCAATTGAAGCGGTTC
GCCAGCCCTCAGCTTGTCGTTACGCATCATGAAGCTCAGCATTTCCCAAA
GTTTATGGCTTTTGATCGGGTACTCTGTGATGTGCCTTGCACGGGCGATG
GGACATTACGCAAAGCCCCAGATATTTGGAGAAGATGGAGCCCAGAAATG
GGTATCGGCATTCATCGTCTTCAACGACAAATTCTGAACAGAGGTATAGA
ACTGTTGAAGCCTGGCGGGGTATTGGTGTATTCGACGTGCAGTATGAATC
CGCTTGAGAACGAAGCCGTAGTTGCCCACGCGTTACGAACGTTTGGGCAG
GACATTCAGCTTATTGACTGTTCTCAGAAACTACCCGAGCTTATCCGTCG
TCCAGGTCTTACTACATGGCTTGTAAAAGACACTGCCTACGGAATGAAAC
CCGAGCAAGAAAATCAAAAGCGAACTGGGGAAAGCCGTGCAAACGATGAT
GAAGTGAGAAACGCGGATAGCAATCATATGAATCCAAATCACTCCAATGG
ATGGTTTACCTCATTTGAGGAAGTTCCACCACGTCGGCAGAAGAAGGTTG
TAAGTTCATTGTTCCCACCTTCTGCTGAGGAACTTTCTAGTGGGCAATTT
CCTCTGCAAAGGTGCATGCGTCTCGTTCCTCATGATCAAGACACAGGAGC
ATTTTTTGTGGCGGTTCTCTTCAAGAGTGAACTGGCGCGCCTCACCCGCC
GCCAACTACGCAATGAAGAAAACTGCGAGCAGAGAGAATCTGCAACCGGT
GATGACGTACGCGATGCGAACGGATCAGAACCTGCAAATAATGACACAAA
ACTTTCCATACCGAAGAAAAGCGGTCGAGGTGGTACCAGGCTTATTACAG
ACGATCCGCTCGTAAATGTCTCCGATTTGTGTCGTAAAAGCCTCGACAAC
ATTTGCTCATTCTTTGGGTTGGACTCCAACATCATGGAACATTGCCTCAT
GACGAGGGGGACTGATGGCACAACTTTCAAGAGAGTTGTGGCTGTCTCAA
GAACGGTTCGAACTGTTCTCAGACATTCCCTTGGTACTAGAGATAAGGAA
GTCATGGAGAACAAACGGGAATTAAGAGTCGTTAACGCAGGTGTGCGTGT
TTTGGAGAGAACAGATAGAAAGGATACCACGTGCCATTTCAGGCTTATCC
AGGAAGGCGCTCACATTATGAGAGCTATCATGAAGAAGAGATGCGTCGAT
GCGGAAGTTTCCGACGTCCTGAGGCTGCTAAGTGAAAACAACATTCGTCG
AAACTCTGATGAGAAACTTCAAAATTTGTTCTCCCTTGGCAGTGGCAGTG
CGATGCTGTGCTGTGGAGAAAGAGAAGAAGCCATAATCTGGATCGGAAAA
CAGATTATAAACGTCGTGATGCCGAAGGAAGTTGTTCTTGCCATGCAGTC
GCAGCTTCGACGGATACTTGGAGAAAAGCCTGATTTGCTGGCGTTGGAAG
CAAATGGTGACAAAGATAGCGCTGAGAAAACCGACGAAGAGTAA

protein sequence of Gcaud1112.t1

>Gcaud1112.t1 ID=Gcaud1112.t1|Name=Gcaud1112.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=748bp
MPSPEEQTVEHPSLKKSLSRAPPKIDLPTKRRRKHGKPKIPRRDNRKSHF
DSDYTPDDGRKNEAFSEYYKMQNIVDKEDFESMLTTFAQPLPTSFRITAQ
GAFREDIHAALVGDISTLFRNVKSEDDSQQIKPPKPLLWYPEELAWTVSA
PRQLLRRDNALAPFHRFLVRMHALGAVNRQEAVSMIPPLLLDAQPGHAVL
DMCAAPGSKTAQILEHLSERGIPLSEPGLVIANDADIKRCWMLVHQLKRF
ASPQLVVTHHEAQHFPKFMAFDRVLCDVPCTGDGTLRKAPDIWRRWSPEM
GIGIHRLQRQILNRGIELLKPGGVLVYSTCSMNPLENEAVVAHALRTFGQ
DIQLIDCSQKLPELIRRPGLTTWLVKDTAYGMKPEQENQKRTGESRANDD
EVRNADSNHMNPNHSNGWFTSFEEVPPRRQKKVVSSLFPPSAEELSSGQF
PLQRCMRLVPHDQDTGAFFVAVLFKSELARLTRRQLRNEENCEQRESATG
DDVRDANGSEPANNDTKLSIPKKSGRGGTRLITDDPLVNVSDLCRKSLDN
ICSFFGLDSNIMEHCLMTRGTDGTTFKRVVAVSRTVRTVLRHSLGTRDKE
VMENKRELRVVNAGVRVLERTDRKDTTCHFRLIQEGAHIMRAIMKKRCVD
AEVSDVLRLLSENNIRRNSDEKLQNLFSLGSGSAMLCCGEREEAIIWIGK
QIINVVMPKEVVLAMQSQLRRILGEKPDLLALEANGDKDSAEKTDEE*

mRNA from alignment at NODE_495_length_23741_cov_4.331670:11914..14157+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1112.t1 ID=Gcaud1112.t1|Name=Gcaud1112.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2244bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:11914..14157+ (Gracilaria caudata M_176_S67 male)
ATGCCTTCGCCTGAGGAACAAACCGTGGAACATCCATCGCTCAAGAAATC
GCTTTCCCGCGCCCCACCAAAGATTGATCTACCAACAAAGAGACGCCGAA
AGCATGGGAAGCCAAAGATACCGCGGAGAGATAATCGTAAATCCCATTTT
GATTCCGATTACACCCCTGACGATGGTCGAAAGAATGAAGCTTTTAGTGA
GTACTACAAGATGCAGAACATTGTTGACAAGGAGGACTTTGAATCTATGC
TCACAACCTTTGCACAACCTCTTCCGACAAGCTTTCGGATAACGGCCCAA
GGAGCTTTTAGAGAGGATATTCACGCCGCGCTCGTAGGTGATATATCGAC
TCTGTTCCGAAATGTGAAATCCGAAGACGATTCCCAGCAGATTAAGCCAC
CAAAACCCCTTTTGTGGTATCCAGAAGAATTGGCGTGGACAGTCTCGGCT
CCTCGCCAGCTACTACGGCGGGACAATGCCTTAGCCCCCTTCCATCGTTT
TCTTGTCCGAATGCATGCCCTCGGTGCTGTTAACCGGCAAGAAGCGGTGA
GTATGATTCCTCCGCTCTTGTTAGATGCTCAACCTGGACATGCAGTATTA
GACATGTGCGCTGCTCCTGGCTCAAAAACTGCTCAAATACTCGAGCATCT
TTCAGAAAGGGGTATTCCCCTCTCCGAGCCTGGTTTGGTGATAGCCAATG
ATGCCGATATTAAACGATGTTGGATGCTTGTTCATCAATTGAAGCGGTTC
GCCAGCCCTCAGCTTGTCGTTACGCATCATGAAGCTCAGCATTTCCCAAA
GTTTATGGCTTTTGATCGGGTACTCTGTGATGTGCCTTGCACGGGCGATG
GGACATTACGCAAAGCCCCAGATATTTGGAGAAGATGGAGCCCAGAAATG
GGTATCGGCATTCATCGTCTTCAACGACAAATTCTGAACAGAGGTATAGA
ACTGTTGAAGCCTGGCGGGGTATTGGTGTATTCGACGTGCAGTATGAATC
CGCTTGAGAACGAAGCCGTAGTTGCCCACGCGTTACGAACGTTTGGGCAG
GACATTCAGCTTATTGACTGTTCTCAGAAACTACCCGAGCTTATCCGTCG
TCCAGGTCTTACTACATGGCTTGTAAAAGACACTGCCTACGGAATGAAAC
CCGAGCAAGAAAATCAAAAGCGAACTGGGGAAAGCCGTGCAAACGATGAT
GAAGTGAGAAACGCGGATAGCAATCATATGAATCCAAATCACTCCAATGG
ATGGTTTACCTCATTTGAGGAAGTTCCACCACGTCGGCAGAAGAAGGTTG
TAAGTTCATTGTTCCCACCTTCTGCTGAGGAACTTTCTAGTGGGCAATTT
CCTCTGCAAAGGTGCATGCGTCTCGTTCCTCATGATCAAGACACAGGAGC
ATTTTTTGTGGCGGTTCTCTTCAAGAGTGAACTGGCGCGCCTCACCCGCC
GCCAACTACGCAATGAAGAAAACTGCGAGCAGAGAGAATCTGCAACCGGT
GATGACGTACGCGATGCGAACGGATCAGAACCTGCAAATAATGACACAAA
ACTTTCCATACCGAAGAAAAGCGGTCGAGGTGGTACCAGGCTTATTACAG
ACGATCCGCTCGTAAATGTCTCCGATTTGTGTCGTAAAAGCCTCGACAAC
ATTTGCTCATTCTTTGGGTTGGACTCCAACATCATGGAACATTGCCTCAT
GACGAGGGGGACTGATGGCACAACTTTCAAGAGAGTTGTGGCTGTCTCAA
GAACGGTTCGAACTGTTCTCAGACATTCCCTTGGTACTAGAGATAAGGAA
GTCATGGAGAACAAACGGGAATTAAGAGTCGTTAACGCAGGTGTGCGTGT
TTTGGAGAGAACAGATAGAAAGGATACCACGTGCCATTTCAGGCTTATCC
AGGAAGGCGCTCACATTATGAGAGCTATCATGAAGAAGAGATGCGTCGAT
GCGGAAGTTTCCGACGTCCTGAGGCTGCTAAGTGAAAACAACATTCGTCG
AAACTCTGATGAGAAACTTCAAAATTTGTTCTCCCTTGGCAGTGGCAGTG
CGATGCTGTGCTGTGGAGAAAGAGAAGAAGCCATAATCTGGATCGGAAAA
CAGATTATAAACGTCGTGATGCCGAAGGAAGTTGTTCTTGCCATGCAGTC
GCAGCTTCGACGGATACTTGGAGAAAAGCCTGATTTGCTGGCGTTGGAAG
CAAATGGTGACAAAGATAGCGCTGAGAAAACCGACGAAGAGTAA

Coding sequence (CDS) from alignment at NODE_495_length_23741_cov_4.331670:11914..14157+

>Gcaud1112.t1 ID=Gcaud1112.t1|Name=Gcaud1112.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2244bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:11914..14157+ (Gracilaria caudata M_176_S67 male)
ATGCCTTCGCCTGAGGAACAAACCGTGGAACATCCATCGCTCAAGAAATC
GCTTTCCCGCGCCCCACCAAAGATTGATCTACCAACAAAGAGACGCCGAA
AGCATGGGAAGCCAAAGATACCGCGGAGAGATAATCGTAAATCCCATTTT
GATTCCGATTACACCCCTGACGATGGTCGAAAGAATGAAGCTTTTAGTGA
GTACTACAAGATGCAGAACATTGTTGACAAGGAGGACTTTGAATCTATGC
TCACAACCTTTGCACAACCTCTTCCGACAAGCTTTCGGATAACGGCCCAA
GGAGCTTTTAGAGAGGATATTCACGCCGCGCTCGTAGGTGATATATCGAC
TCTGTTCCGAAATGTGAAATCCGAAGACGATTCCCAGCAGATTAAGCCAC
CAAAACCCCTTTTGTGGTATCCAGAAGAATTGGCGTGGACAGTCTCGGCT
CCTCGCCAGCTACTACGGCGGGACAATGCCTTAGCCCCCTTCCATCGTTT
TCTTGTCCGAATGCATGCCCTCGGTGCTGTTAACCGGCAAGAAGCGGTGA
GTATGATTCCTCCGCTCTTGTTAGATGCTCAACCTGGACATGCAGTATTA
GACATGTGCGCTGCTCCTGGCTCAAAAACTGCTCAAATACTCGAGCATCT
TTCAGAAAGGGGTATTCCCCTCTCCGAGCCTGGTTTGGTGATAGCCAATG
ATGCCGATATTAAACGATGTTGGATGCTTGTTCATCAATTGAAGCGGTTC
GCCAGCCCTCAGCTTGTCGTTACGCATCATGAAGCTCAGCATTTCCCAAA
GTTTATGGCTTTTGATCGGGTACTCTGTGATGTGCCTTGCACGGGCGATG
GGACATTACGCAAAGCCCCAGATATTTGGAGAAGATGGAGCCCAGAAATG
GGTATCGGCATTCATCGTCTTCAACGACAAATTCTGAACAGAGGTATAGA
ACTGTTGAAGCCTGGCGGGGTATTGGTGTATTCGACGTGCAGTATGAATC
CGCTTGAGAACGAAGCCGTAGTTGCCCACGCGTTACGAACGTTTGGGCAG
GACATTCAGCTTATTGACTGTTCTCAGAAACTACCCGAGCTTATCCGTCG
TCCAGGTCTTACTACATGGCTTGTAAAAGACACTGCCTACGGAATGAAAC
CCGAGCAAGAAAATCAAAAGCGAACTGGGGAAAGCCGTGCAAACGATGAT
GAAGTGAGAAACGCGGATAGCAATCATATGAATCCAAATCACTCCAATGG
ATGGTTTACCTCATTTGAGGAAGTTCCACCACGTCGGCAGAAGAAGGTTG
TAAGTTCATTGTTCCCACCTTCTGCTGAGGAACTTTCTAGTGGGCAATTT
CCTCTGCAAAGGTGCATGCGTCTCGTTCCTCATGATCAAGACACAGGAGC
ATTTTTTGTGGCGGTTCTCTTCAAGAGTGAACTGGCGCGCCTCACCCGCC
GCCAACTACGCAATGAAGAAAACTGCGAGCAGAGAGAATCTGCAACCGGT
GATGACGTACGCGATGCGAACGGATCAGAACCTGCAAATAATGACACAAA
ACTTTCCATACCGAAGAAAAGCGGTCGAGGTGGTACCAGGCTTATTACAG
ACGATCCGCTCGTAAATGTCTCCGATTTGTGTCGTAAAAGCCTCGACAAC
ATTTGCTCATTCTTTGGGTTGGACTCCAACATCATGGAACATTGCCTCAT
GACGAGGGGGACTGATGGCACAACTTTCAAGAGAGTTGTGGCTGTCTCAA
GAACGGTTCGAACTGTTCTCAGACATTCCCTTGGTACTAGAGATAAGGAA
GTCATGGAGAACAAACGGGAATTAAGAGTCGTTAACGCAGGTGTGCGTGT
TTTGGAGAGAACAGATAGAAAGGATACCACGTGCCATTTCAGGCTTATCC
AGGAAGGCGCTCACATTATGAGAGCTATCATGAAGAAGAGATGCGTCGAT
GCGGAAGTTTCCGACGTCCTGAGGCTGCTAAGTGAAAACAACATTCGTCG
AAACTCTGATGAGAAACTTCAAAATTTGTTCTCCCTTGGCAGTGGCAGTG
CGATGCTGTGCTGTGGAGAAAGAGAAGAAGCCATAATCTGGATCGGAAAA
CAGATTATAAACGTCGTGATGCCGAAGGAAGTTGTTCTTGCCATGCAGTC
GCAGCTTCGACGGATACTTGGAGAAAAGCCTGATTTGCTGGCGTTGGAAG
CAAATGGTGACAAAGATAGCGCTGAGAAAACCGACGAAGAGTAA