Gcaud1110.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1110.t1
Unique NameGcaud1110.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_495_length_23741_cov_4.331670contigNODE_495_length_23741_cov_4.331670:9544..10027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG169CT
Preferred namePOLR2I
PFAMsRNA_POL_M_15KD,TFIIS_C
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03017
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0001192,GO:0001193,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue7.54e-39
EggNOG OGsCOG1594@1|root,KOG2691@2759|Eukaryota
Descriptionmaintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1110Gcaud1110Gracilaria caudata M_176_S67 malegeneNODE_495_length_23741_cov_4.331670 9544..10027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1110.t1Gcaud1110.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_495_length_23741_cov_4.331670 9544..10027 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1110.t1.start1Gcaud1110.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_495_length_23741_cov_4.331670 9544..9546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1110.t1.CDS1Gcaud1110.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_495_length_23741_cov_4.331670 9544..9722 +
Gcaud1110.t1.CDS2Gcaud1110.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_495_length_23741_cov_4.331670 9829..10027 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1110.t1.exon1Gcaud1110.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_495_length_23741_cov_4.331670 9544..9722 +
Gcaud1110.t1.exon2Gcaud1110.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_495_length_23741_cov_4.331670 9829..10027 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1110.t1.intron1Gcaud1110.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_495_length_23741_cov_4.331670 9723..9828 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1110.t1.stop1Gcaud1110.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_495_length_23741_cov_4.331670 10025..10027 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1110.t1 ID=Gcaud1110.t1|Name=Gcaud1110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=126bp
MPVRFCSSCQNMLYPQEDVAERRATGRKVLNYVCRNCVHKENAGEINYPI
HKNIIVHTANEKMAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPV
GKNDEALVLIFVCVNCGTRWLSSEE*
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spliced messenger RNA

>Gcaud1110.t1 ID=Gcaud1110.t1|Name=Gcaud1110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=378bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:9544..10027+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTCCGCTTCTGCTCGTCATGTCAGAACATGCTTTATCCTCAGGA
GGATGTTGCTGAACGACGGGCAACCGGACGCAAAGTATTGAACTACGTTT
GTCGCAACTGTGTTCACAAAGAAAACGCTGGCGAAATCAACTATCCCATT
CACAAAAACATTATTGTGCACACCGCCAATGAAAAAATGGCAATCACTTA
TGACGTGTTGGAAGACAAGACCCTCCCGCGCACTTTCAACGCAAACTGCC
CCGATCAAGAATGTCAGGGTAAACAAGCCGTATATTATCAAAGTCCAGTA
GGGAAGAACGATGAAGCGCTGGTTCTCATCTTTGTGTGTGTTAACTGCGG
TACACGATGGTTATCAAGCGAAGAATGA
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protein sequence of Gcaud1110.t1

>Gcaud1110.t1 ID=Gcaud1110.t1|Name=Gcaud1110.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=126bp
MPVRFCSSCQNMLYPQEDVAERRATGRKVLNYVCRNCVHKENAGEINYPI
HKNIIVHTANEKMAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPV
GKNDEALVLIFVCVNCGTRWLSSEE*
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mRNA from alignment at NODE_495_length_23741_cov_4.331670:9544..10027+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1110.t1 ID=Gcaud1110.t1|Name=Gcaud1110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=484bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:9544..10027+ (Gracilaria caudata M_176_S67 male)
ATGCCGGTCCGCTTCTGCTCGTCATGTCAGAACATGCTTTATCCTCAGGA
GGATGTTGCTGAACGACGGGCAACCGGACGCAAAGTATTGAACTACGTTT
GTCGCAACTGTGTTCACAAAGAAAACGCTGGCGAAATCAACTATCCCATT
CACAAAAACATTATTGTGCACACCGCCAAGTAAGTTTCAAGTATACTTTT
GTGGTCTAATTCTCCCTCAGCAGAGTTGGATGAACTCGATACTAACGACT
GCTTTTCATGCAATCACCTTGTATTGCTTATCTAGTGAAAAAATGGCAAT
CACTTATGACGTGTTGGAAGACAAGACCCTCCCGCGCACTTTCAACGCAA
ACTGCCCCGATCAAGAATGTCAGGGTAAACAAGCCGTATATTATCAAAGT
CCAGTAGGGAAGAACGATGAAGCGCTGGTTCTCATCTTTGTGTGTGTTAA
CTGCGGTACACGATGGTTATCAAGCGAAGAATGA
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Coding sequence (CDS) from alignment at NODE_495_length_23741_cov_4.331670:9544..10027+

>Gcaud1110.t1 ID=Gcaud1110.t1|Name=Gcaud1110.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=378bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:9544..10027+ (Gracilaria caudata M_176_S67 male)
ATGCCGGTCCGCTTCTGCTCGTCATGTCAGAACATGCTTTATCCTCAGGA
GGATGTTGCTGAACGACGGGCAACCGGACGCAAAGTATTGAACTACGTTT
GTCGCAACTGTGTTCACAAAGAAAACGCTGGCGAAATCAACTATCCCATT
CACAAAAACATTATTGTGCACACCGCCAATGAAAAAATGGCAATCACTTA
TGACGTGTTGGAAGACAAGACCCTCCCGCGCACTTTCAACGCAAACTGCC
CCGATCAAGAATGTCAGGGTAAACAAGCCGTATATTATCAAAGTCCAGTA
GGGAAGAACGATGAAGCGCTGGTTCTCATCTTTGTGTGTGTTAACTGCGG
TACACGATGGTTATCAAGCGAAGAATGA
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