Gcaud1104.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1104.t1
Unique Name	Gcaud1104.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_955_length_15761_cov_4.691959	contig	NODE_955_length_15761_cov_4.691959:6501..7694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29850.GGTG_10887T0
Max annot lvl	4751\|Fungi
Evalue	1.15e-50
EggNOG OGs	292CQ@1\|root,2R994@2759\|Eukaryota,38M38@33154\|Opisthokonta,3PNZM@4751\|Fungi,3R882@4890\|Ascomycota,21EKA@147550\|Sordariomycetes,41QDK@639021\|Magnaporthales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1104	Gcaud1104	Gracilaria caudata M_176_S67 male	gene	NODE_955_length_15761_cov_4.691959 6501..7694 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1104.t1.start1	Gcaud1104.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_955_length_15761_cov_4.691959 6501..6503 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1104.t1.CDS1	Gcaud1104.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_955_length_15761_cov_4.691959 6501..7694 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1104.t1.exon1	Gcaud1104.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_955_length_15761_cov_4.691959 6501..7694 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1104.t1.stop1	Gcaud1104.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_955_length_15761_cov_4.691959 7692..7694 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1104.t1	Gcaud1104.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_955_length_15761_cov_4.691959 6501..7694 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_955_length_15761_cov_4.691959:6501..7694+
coding sequence from alignment at NODE_955_length_15761_cov_4.691959:6501..7694+

mRNA sequence

>Gcaud1104.t1 ID=Gcaud1104.t1|Name=Gcaud1104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=398bp
MLLTIPKSMTITTLLPLFFLCFVNAETLSNQTFAHAHLPVQSKQISQQVL
DCKASDPLLRAICNVGLATVNAELKSRGVAIRKDGLLFTYDDPKHKDLPT
GHSCSVTAKVRHIHFGVHFASSTTLDLSGNSLSEPLAIALKLPVRGNARV
DVRQRFGFRFFGKCKRYARDTFALKAGVSTTADVVVGFALNPSIKTLSSG
HYELTLMPVIATLFELENLDLDFRVSKVSPITPIWTFIVGFKSSILRTLT
DIFRGKNLKRTFQKLGRSLIVDFGAPIVLGIGALPRPLEDLIFDALLNVA
ERKVEKEAKGFGEDVEQKLNEELRRALKLGTDGKRTFVIKSNILELIGKD
GKNADVFVKERSARRGRRTYTPRGAGRNPSRGRGCRGVRCARQYREP*

spliced messenger RNA

>Gcaud1104.t1 ID=Gcaud1104.t1|Name=Gcaud1104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_955_length_15761_cov_4.691959:6501..7694+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTGACCATTCCGAAATCTATGACCATCACGACTCTTCTTCCCCT
TTTCTTTCTCTGCTTTGTCAATGCCGAAACGTTATCGAATCAAACGTTTG
CGCACGCACATCTTCCGGTGCAGTCGAAACAAATCTCACAACAAGTTCTT
GACTGCAAAGCCTCCGATCCCCTTCTCCGCGCGATCTGCAACGTTGGTCT
AGCAACCGTGAACGCCGAATTGAAATCGCGAGGAGTGGCCATTCGGAAAG
ATGGACTCTTATTCACTTACGACGACCCAAAGCACAAGGATCTTCCAACG
GGACATAGTTGCTCAGTCACAGCCAAGGTTCGACACATTCATTTCGGAGT
ACATTTCGCAAGCTCTACCACCCTCGATCTTTCAGGAAACTCGCTGTCGG
AACCACTCGCCATAGCTCTCAAACTACCCGTTCGTGGAAATGCTAGGGTG
GATGTGAGACAACGTTTTGGCTTTCGTTTCTTTGGCAAGTGTAAACGATA
TGCTCGAGATACGTTTGCACTCAAGGCTGGTGTGAGCACCACTGCTGATG
TTGTTGTGGGCTTTGCACTCAATCCATCAATCAAGACATTGTCATCTGGC
CATTATGAATTGACACTCATGCCGGTGATTGCCACGTTGTTTGAGCTTGA
GAACCTCGACTTGGATTTCCGCGTGAGCAAAGTGAGTCCGATAACTCCCA
TTTGGACTTTTATTGTCGGTTTCAAATCATCCATTCTACGAACGCTCACC
GATATATTCCGAGGAAAGAATCTGAAGAGAACATTTCAGAAACTTGGCAG
GAGTTTGATCGTTGATTTCGGTGCACCAATTGTGCTCGGAATCGGTGCTC
TTCCCAGACCTCTGGAAGATCTCATTTTTGACGCGCTCTTGAACGTGGCG
GAACGAAAAGTGGAGAAAGAAGCAAAAGGATTTGGGGAGGATGTGGAGCA
GAAATTGAATGAAGAGCTTCGACGGGCGTTGAAACTCGGCACAGATGGCA
AACGAACATTCGTCATCAAATCGAACATTCTGGAGTTGATCGGCAAAGAT
GGAAAGAATGCGGACGTTTTTGTTAAGGAGCGCAGCGCTCGTCGTGGCCG
TCGCACATATACCCCTCGCGGTGCTGGTAGGAACCCTTCTCGTGGACGTG
GCTGCAGGGGCGTGAGGTGCGCACGTCAATATCGTGAACCGTGA

protein sequence of Gcaud1104.t1

>Gcaud1104.t1 ID=Gcaud1104.t1|Name=Gcaud1104.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=398bp
MLLTIPKSMTITTLLPLFFLCFVNAETLSNQTFAHAHLPVQSKQISQQVL
DCKASDPLLRAICNVGLATVNAELKSRGVAIRKDGLLFTYDDPKHKDLPT
GHSCSVTAKVRHIHFGVHFASSTTLDLSGNSLSEPLAIALKLPVRGNARV
DVRQRFGFRFFGKCKRYARDTFALKAGVSTTADVVVGFALNPSIKTLSSG
HYELTLMPVIATLFELENLDLDFRVSKVSPITPIWTFIVGFKSSILRTLT
DIFRGKNLKRTFQKLGRSLIVDFGAPIVLGIGALPRPLEDLIFDALLNVA
ERKVEKEAKGFGEDVEQKLNEELRRALKLGTDGKRTFVIKSNILELIGKD
GKNADVFVKERSARRGRRTYTPRGAGRNPSRGRGCRGVRCARQYREP*

mRNA from alignment at NODE_955_length_15761_cov_4.691959:6501..7694+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1104.t1 ID=Gcaud1104.t1|Name=Gcaud1104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_955_length_15761_cov_4.691959:6501..7694+ (Gracilaria caudata M_176_S67 male)
ATGTTGCTGACCATTCCGAAATCTATGACCATCACGACTCTTCTTCCCCT
TTTCTTTCTCTGCTTTGTCAATGCCGAAACGTTATCGAATCAAACGTTTG
CGCACGCACATCTTCCGGTGCAGTCGAAACAAATCTCACAACAAGTTCTT
GACTGCAAAGCCTCCGATCCCCTTCTCCGCGCGATCTGCAACGTTGGTCT
AGCAACCGTGAACGCCGAATTGAAATCGCGAGGAGTGGCCATTCGGAAAG
ATGGACTCTTATTCACTTACGACGACCCAAAGCACAAGGATCTTCCAACG
GGACATAGTTGCTCAGTCACAGCCAAGGTTCGACACATTCATTTCGGAGT
ACATTTCGCAAGCTCTACCACCCTCGATCTTTCAGGAAACTCGCTGTCGG
AACCACTCGCCATAGCTCTCAAACTACCCGTTCGTGGAAATGCTAGGGTG
GATGTGAGACAACGTTTTGGCTTTCGTTTCTTTGGCAAGTGTAAACGATA
TGCTCGAGATACGTTTGCACTCAAGGCTGGTGTGAGCACCACTGCTGATG
TTGTTGTGGGCTTTGCACTCAATCCATCAATCAAGACATTGTCATCTGGC
CATTATGAATTGACACTCATGCCGGTGATTGCCACGTTGTTTGAGCTTGA
GAACCTCGACTTGGATTTCCGCGTGAGCAAAGTGAGTCCGATAACTCCCA
TTTGGACTTTTATTGTCGGTTTCAAATCATCCATTCTACGAACGCTCACC
GATATATTCCGAGGAAAGAATCTGAAGAGAACATTTCAGAAACTTGGCAG
GAGTTTGATCGTTGATTTCGGTGCACCAATTGTGCTCGGAATCGGTGCTC
TTCCCAGACCTCTGGAAGATCTCATTTTTGACGCGCTCTTGAACGTGGCG
GAACGAAAAGTGGAGAAAGAAGCAAAAGGATTTGGGGAGGATGTGGAGCA
GAAATTGAATGAAGAGCTTCGACGGGCGTTGAAACTCGGCACAGATGGCA
AACGAACATTCGTCATCAAATCGAACATTCTGGAGTTGATCGGCAAAGAT
GGAAAGAATGCGGACGTTTTTGTTAAGGAGCGCAGCGCTCGTCGTGGCCG
TCGCACATATACCCCTCGCGGTGCTGGTAGGAACCCTTCTCGTGGACGTG
GCTGCAGGGGCGTGAGGTGCGCACGTCAATATCGTGAACCGTGA

Coding sequence (CDS) from alignment at NODE_955_length_15761_cov_4.691959:6501..7694+

>Gcaud1104.t1 ID=Gcaud1104.t1|Name=Gcaud1104.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1194bp|location=Sequence derived from alignment at NODE_955_length_15761_cov_4.691959:6501..7694+ (Gracilaria caudata M_176_S67 male)
ATGTTGCTGACCATTCCGAAATCTATGACCATCACGACTCTTCTTCCCCT
TTTCTTTCTCTGCTTTGTCAATGCCGAAACGTTATCGAATCAAACGTTTG
CGCACGCACATCTTCCGGTGCAGTCGAAACAAATCTCACAACAAGTTCTT
GACTGCAAAGCCTCCGATCCCCTTCTCCGCGCGATCTGCAACGTTGGTCT
AGCAACCGTGAACGCCGAATTGAAATCGCGAGGAGTGGCCATTCGGAAAG
ATGGACTCTTATTCACTTACGACGACCCAAAGCACAAGGATCTTCCAACG
GGACATAGTTGCTCAGTCACAGCCAAGGTTCGACACATTCATTTCGGAGT
ACATTTCGCAAGCTCTACCACCCTCGATCTTTCAGGAAACTCGCTGTCGG
AACCACTCGCCATAGCTCTCAAACTACCCGTTCGTGGAAATGCTAGGGTG
GATGTGAGACAACGTTTTGGCTTTCGTTTCTTTGGCAAGTGTAAACGATA
TGCTCGAGATACGTTTGCACTCAAGGCTGGTGTGAGCACCACTGCTGATG
TTGTTGTGGGCTTTGCACTCAATCCATCAATCAAGACATTGTCATCTGGC
CATTATGAATTGACACTCATGCCGGTGATTGCCACGTTGTTTGAGCTTGA
GAACCTCGACTTGGATTTCCGCGTGAGCAAAGTGAGTCCGATAACTCCCA
TTTGGACTTTTATTGTCGGTTTCAAATCATCCATTCTACGAACGCTCACC
GATATATTCCGAGGAAAGAATCTGAAGAGAACATTTCAGAAACTTGGCAG
GAGTTTGATCGTTGATTTCGGTGCACCAATTGTGCTCGGAATCGGTGCTC
TTCCCAGACCTCTGGAAGATCTCATTTTTGACGCGCTCTTGAACGTGGCG
GAACGAAAAGTGGAGAAAGAAGCAAAAGGATTTGGGGAGGATGTGGAGCA
GAAATTGAATGAAGAGCTTCGACGGGCGTTGAAACTCGGCACAGATGGCA
AACGAACATTCGTCATCAAATCGAACATTCTGGAGTTGATCGGCAAAGAT
GGAAAGAATGCGGACGTTTTTGTTAAGGAGCGCAGCGCTCGTCGTGGCCG
TCGCACATATACCCCTCGCGGTGCTGGTAGGAACCCTTCTCGTGGACGTG
GCTGCAGGGGCGTGAGGTGCGCACGTCAATATCGTGAACCGTGA