Gcaud1101.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1101.t1
Unique Name	Gcaud1101.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	649

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_259_length_33664_cov_4.059572	contig	NODE_259_length_33664_cov_4.059572:24932..27124 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1101	Gcaud1101	Gracilaria caudata M_176_S67 male	gene	NODE_259_length_33664_cov_4.059572 24932..27124 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1101.t1	Gcaud1101.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_259_length_33664_cov_4.059572 24932..27124 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1101.t1.stop1	Gcaud1101.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_259_length_33664_cov_4.059572 24932..24934 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1101.t1.CDS1	Gcaud1101.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_259_length_33664_cov_4.059572 24932..26325 -
Gcaud1101.t1.CDS2	Gcaud1101.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_259_length_33664_cov_4.059572 26457..26975 -
Gcaud1101.t1.CDS3	Gcaud1101.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_259_length_33664_cov_4.059572 27091..27124 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1101.t1.exon1	Gcaud1101.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_259_length_33664_cov_4.059572 24932..26325 -
Gcaud1101.t1.exon2	Gcaud1101.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_259_length_33664_cov_4.059572 26457..26975 -
Gcaud1101.t1.exon3	Gcaud1101.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_259_length_33664_cov_4.059572 27091..27124 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1101.t1.intron1	Gcaud1101.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_259_length_33664_cov_4.059572 26326..26456 -
Gcaud1101.t1.intron2	Gcaud1101.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_259_length_33664_cov_4.059572 26976..27090 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1101.t1.start1	Gcaud1101.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_259_length_33664_cov_4.059572 27122..27124 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_259_length_33664_cov_4.059572:24932..27124-
coding sequence from alignment at NODE_259_length_33664_cov_4.059572:24932..27124-

mRNA sequence

>Gcaud1101.t1 ID=Gcaud1101.t1|Name=Gcaud1101.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=649bp
MNNTQQALSNDDPETIRRLQREWRIAKRKEIEDKKRKKKFRTLETPVIQD
VSRTAGPQYITVQSNGVTLPHSSAANVHFQFQPHVVQGQPTASNPLFVNA
MQVGGAPSHSQQHPHVDHADEKHRQVTQQHSVPNVSGIVQPRSQETVQYS
AHHDIHSNPDPAQCSPSSSPHGMEQENPGSIGMSAGASQPMGSHYLSPAR
DSSTFTTLGEQKVAYVHSTMEAPRSTTDGSAADNSVVVGHGMTEETRRKI
EIEEAQRRWRENKRKELAMKRARAASSKRGRKRTKLVHQHPIIDHPVQVV
STSPPLTSAIPFPTSSGVTSALPVSSALHNPGTNDQLQVSSSEIPSSVVR
SMGLSVSDPISTSIAMSSPVQTTVPFPLSSVPIPSSVAVPVVPALTIQHV
QSSNYGVGHDPDTGFVSLPLSTSHQFSNVVTPERVPQNGMNATAVNTISS
EDGTMAVYEPLHHNTRDQPQTSGAPPSLPVAPLVCATDLIESRPRHNDVP
NHIIERRESKLHSTAPDMGPSPNDKMSNEVGVQPIDEEGQTSRAEKDEAD
YVVQAPMREQSKDIGADVRATELDVRGTISTMEPEVQNIKPSPGSERTSK
QYEEHAKTSEEHGPGKDFEDPQESFQEDGGDDLMNSVTWQSLGSIENP*

spliced messenger RNA

>Gcaud1101.t1 ID=Gcaud1101.t1|Name=Gcaud1101.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:24932..27124- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAACACACAACAGGCGCTTTCAAATGATGATCCTGAGACCATTCG
TCGCTTGCAGCGAGAATGGCGAATAGCCAAGCGGAAGGAGATTGAGGACA
AGAAGCGGAAGAAAAAGTTTCGAACGCTGGAAACCCCGGTTATCCAAGAT
GTTTCTCGCACAGCCGGTCCTCAGTATATAACCGTGCAATCCAATGGCGT
AACTCTTCCCCACAGTTCTGCCGCCAATGTGCACTTTCAGTTCCAGCCCC
ATGTCGTACAAGGCCAACCCACTGCGTCGAATCCATTGTTTGTGAACGCC
ATGCAAGTTGGAGGCGCGCCATCACATTCGCAGCAGCATCCACATGTCGA
TCATGCTGATGAAAAACATCGCCAAGTCACGCAGCAGCATTCCGTGCCAA
ATGTCTCTGGTATTGTTCAGCCTAGATCGCAAGAAACGGTTCAATATTCT
GCACATCACGATATTCATTCAAACCCGGATCCTGCTCAATGTTCTCCGTC
ATCTTCGCCCCATGGAATGGAGCAAGAGAATCCTGGCTCGATTGGAATGT
CAGCAGGAGCTTCACAACCAATGGGAAGCCATTACCTCTCTCCTGCCAGG
GATAGTTCCACTTTCACCACTTTGGGAGAACAGAAGGTTGCATATGTTCA
TAGCACAATGGAGGCTCCCAGGTCAACGACAGATGGTAGCGCCGCAGACA
ATTCTGTTGTCGTGGGTCACGGTATGACCGAAGAAACGCGAAGGAAAATA
GAAATTGAAGAGGCGCAGCGACGATGGAGAGAAAACAAGCGAAAGGAACT
CGCCATGAAAAGAGCCAGGGCGGCTAGTTCGAAACGAGGTCGAAAACGTA
CGAAGTTGGTTCATCAGCATCCGATAATTGACCACCCTGTACAGGTTGTT
TCGACAAGTCCTCCCTTGACCTCAGCGATTCCATTCCCAACTTCATCCGG
AGTGACAAGCGCGTTGCCAGTTTCTTCCGCGTTGCACAATCCTGGAACTA
ACGATCAGCTGCAAGTATCCTCTAGTGAGATTCCTTCGTCTGTTGTAAGA
TCAATGGGACTCTCGGTCTCAGACCCTATATCTACTTCAATTGCCATGTC
AAGTCCGGTACAGACGACTGTGCCTTTTCCCTTGTCGTCCGTTCCAATTC
CGTCCTCAGTTGCTGTTCCAGTGGTTCCCGCATTGACAATTCAACATGTA
CAATCGTCGAATTATGGGGTTGGTCACGATCCTGATACAGGATTCGTCTC
TCTTCCGTTGAGCACCTCGCACCAATTCTCAAACGTTGTAACGCCAGAAA
GAGTACCGCAGAATGGCATGAATGCAACAGCAGTGAACACTATCTCTTCA
GAAGACGGTACTATGGCTGTGTACGAACCTCTTCACCATAATACAAGGGA
CCAACCTCAGACTTCTGGAGCGCCTCCATCTCTACCTGTAGCACCTTTGG
TTTGCGCGACAGACTTAATCGAATCGCGACCGAGGCATAATGATGTACCT
AACCACATCATCGAAAGGAGGGAGTCAAAGCTACACTCCACAGCCCCAGA
TATGGGTCCTTCGCCCAACGACAAAATGAGTAACGAAGTTGGAGTACAAC
CGATCGATGAGGAAGGACAAACCTCTAGGGCAGAGAAAGATGAAGCGGAC
TACGTCGTTCAAGCACCAATGAGAGAACAGAGCAAGGATATTGGTGCAGA
CGTACGTGCCACAGAACTAGACGTTCGAGGAACAATTTCCACCATGGAAC
CTGAAGTTCAGAACATAAAGCCTTCTCCAGGCAGCGAAAGAACTTCAAAA
CAATATGAGGAGCATGCAAAAACATCTGAGGAGCATGGGCCAGGAAAGGA
TTTTGAAGATCCGCAGGAGTCTTTTCAGGAAGATGGCGGCGATGATCTTA
TGAACTCGGTAACTTGGCAAAGCCTTGGGAGCATTGAAAACCCGTGA

protein sequence of Gcaud1101.t1

>Gcaud1101.t1 ID=Gcaud1101.t1|Name=Gcaud1101.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=649bp
MNNTQQALSNDDPETIRRLQREWRIAKRKEIEDKKRKKKFRTLETPVIQD
VSRTAGPQYITVQSNGVTLPHSSAANVHFQFQPHVVQGQPTASNPLFVNA
MQVGGAPSHSQQHPHVDHADEKHRQVTQQHSVPNVSGIVQPRSQETVQYS
AHHDIHSNPDPAQCSPSSSPHGMEQENPGSIGMSAGASQPMGSHYLSPAR
DSSTFTTLGEQKVAYVHSTMEAPRSTTDGSAADNSVVVGHGMTEETRRKI
EIEEAQRRWRENKRKELAMKRARAASSKRGRKRTKLVHQHPIIDHPVQVV
STSPPLTSAIPFPTSSGVTSALPVSSALHNPGTNDQLQVSSSEIPSSVVR
SMGLSVSDPISTSIAMSSPVQTTVPFPLSSVPIPSSVAVPVVPALTIQHV
QSSNYGVGHDPDTGFVSLPLSTSHQFSNVVTPERVPQNGMNATAVNTISS
EDGTMAVYEPLHHNTRDQPQTSGAPPSLPVAPLVCATDLIESRPRHNDVP
NHIIERRESKLHSTAPDMGPSPNDKMSNEVGVQPIDEEGQTSRAEKDEAD
YVVQAPMREQSKDIGADVRATELDVRGTISTMEPEVQNIKPSPGSERTSK
QYEEHAKTSEEHGPGKDFEDPQESFQEDGGDDLMNSVTWQSLGSIENP*

mRNA from alignment at NODE_259_length_33664_cov_4.059572:24932..27124-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1101.t1 ID=Gcaud1101.t1|Name=Gcaud1101.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2193bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:24932..27124- (Gracilaria caudata M_176_S67 male)
ATGAATAACACACAACAGGCGCTTTCAAATGATGGTATGTTCCTCTTGGT
GCGCCGTGCCAGCGTACAGCCCTAGCCACGAATCCGAAATCCGTATCATT
CTAACCTTGTTTCGCCCAAACTCTATCGAAACTTGCGCGCGCTCTGCAGA
TCCTGAGACCATTCGTCGCTTGCAGCGAGAATGGCGAATAGCCAAGCGGA
AGGAGATTGAGGACAAGAAGCGGAAGAAAAAGTTTCGAACGCTGGAAACC
CCGGTTATCCAAGATGTTTCTCGCACAGCCGGTCCTCAGTATATAACCGT
GCAATCCAATGGCGTAACTCTTCCCCACAGTTCTGCCGCCAATGTGCACT
TTCAGTTCCAGCCCCATGTCGTACAAGGCCAACCCACTGCGTCGAATCCA
TTGTTTGTGAACGCCATGCAAGTTGGAGGCGCGCCATCACATTCGCAGCA
GCATCCACATGTCGATCATGCTGATGAAAAACATCGCCAAGTCACGCAGC
AGCATTCCGTGCCAAATGTCTCTGGTATTGTTCAGCCTAGATCGCAAGAA
ACGGTTCAATATTCTGCACATCACGATATTCATTCAAACCCGGATCCTGC
TCAATGTTCTCCGTCATCTTCGCCCCATGGAATGGAGCAAGAGAATCCTG
GCTCGATTGGAATGTCAGGTATGTTATCTTCCTTTCATGCGTATCCGAGC
GTTCACAGTGACGGCGAGTGTTATCTTACAATGCGCGCCACCAAGTTTTG
GATGCTATCAGTTTGTCAAATGATTCTGACTCTATCATATTTCTAACAGC
AGGAGCTTCACAACCAATGGGAAGCCATTACCTCTCTCCTGCCAGGGATA
GTTCCACTTTCACCACTTTGGGAGAACAGAAGGTTGCATATGTTCATAGC
ACAATGGAGGCTCCCAGGTCAACGACAGATGGTAGCGCCGCAGACAATTC
TGTTGTCGTGGGTCACGGTATGACCGAAGAAACGCGAAGGAAAATAGAAA
TTGAAGAGGCGCAGCGACGATGGAGAGAAAACAAGCGAAAGGAACTCGCC
ATGAAAAGAGCCAGGGCGGCTAGTTCGAAACGAGGTCGAAAACGTACGAA
GTTGGTTCATCAGCATCCGATAATTGACCACCCTGTACAGGTTGTTTCGA
CAAGTCCTCCCTTGACCTCAGCGATTCCATTCCCAACTTCATCCGGAGTG
ACAAGCGCGTTGCCAGTTTCTTCCGCGTTGCACAATCCTGGAACTAACGA
TCAGCTGCAAGTATCCTCTAGTGAGATTCCTTCGTCTGTTGTAAGATCAA
TGGGACTCTCGGTCTCAGACCCTATATCTACTTCAATTGCCATGTCAAGT
CCGGTACAGACGACTGTGCCTTTTCCCTTGTCGTCCGTTCCAATTCCGTC
CTCAGTTGCTGTTCCAGTGGTTCCCGCATTGACAATTCAACATGTACAAT
CGTCGAATTATGGGGTTGGTCACGATCCTGATACAGGATTCGTCTCTCTT
CCGTTGAGCACCTCGCACCAATTCTCAAACGTTGTAACGCCAGAAAGAGT
ACCGCAGAATGGCATGAATGCAACAGCAGTGAACACTATCTCTTCAGAAG
ACGGTACTATGGCTGTGTACGAACCTCTTCACCATAATACAAGGGACCAA
CCTCAGACTTCTGGAGCGCCTCCATCTCTACCTGTAGCACCTTTGGTTTG
CGCGACAGACTTAATCGAATCGCGACCGAGGCATAATGATGTACCTAACC
ACATCATCGAAAGGAGGGAGTCAAAGCTACACTCCACAGCCCCAGATATG
GGTCCTTCGCCCAACGACAAAATGAGTAACGAAGTTGGAGTACAACCGAT
CGATGAGGAAGGACAAACCTCTAGGGCAGAGAAAGATGAAGCGGACTACG
TCGTTCAAGCACCAATGAGAGAACAGAGCAAGGATATTGGTGCAGACGTA
CGTGCCACAGAACTAGACGTTCGAGGAACAATTTCCACCATGGAACCTGA
AGTTCAGAACATAAAGCCTTCTCCAGGCAGCGAAAGAACTTCAAAACAAT
ATGAGGAGCATGCAAAAACATCTGAGGAGCATGGGCCAGGAAAGGATTTT
GAAGATCCGCAGGAGTCTTTTCAGGAAGATGGCGGCGATGATCTTATGAA
CTCGGTAACTTGGCAAAGCCTTGGGAGCATTGAAAACCCGTGA

Coding sequence (CDS) from alignment at NODE_259_length_33664_cov_4.059572:24932..27124-

>Gcaud1101.t1 ID=Gcaud1101.t1|Name=Gcaud1101.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1947bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:24932..27124- (Gracilaria caudata M_176_S67 male)
ATGAATAACACACAACAGGCGCTTTCAAATGATGATCCTGAGACCATTCG
TCGCTTGCAGCGAGAATGGCGAATAGCCAAGCGGAAGGAGATTGAGGACA
AGAAGCGGAAGAAAAAGTTTCGAACGCTGGAAACCCCGGTTATCCAAGAT
GTTTCTCGCACAGCCGGTCCTCAGTATATAACCGTGCAATCCAATGGCGT
AACTCTTCCCCACAGTTCTGCCGCCAATGTGCACTTTCAGTTCCAGCCCC
ATGTCGTACAAGGCCAACCCACTGCGTCGAATCCATTGTTTGTGAACGCC
ATGCAAGTTGGAGGCGCGCCATCACATTCGCAGCAGCATCCACATGTCGA
TCATGCTGATGAAAAACATCGCCAAGTCACGCAGCAGCATTCCGTGCCAA
ATGTCTCTGGTATTGTTCAGCCTAGATCGCAAGAAACGGTTCAATATTCT
GCACATCACGATATTCATTCAAACCCGGATCCTGCTCAATGTTCTCCGTC
ATCTTCGCCCCATGGAATGGAGCAAGAGAATCCTGGCTCGATTGGAATGT
CAGCAGGAGCTTCACAACCAATGGGAAGCCATTACCTCTCTCCTGCCAGG
GATAGTTCCACTTTCACCACTTTGGGAGAACAGAAGGTTGCATATGTTCA
TAGCACAATGGAGGCTCCCAGGTCAACGACAGATGGTAGCGCCGCAGACA
ATTCTGTTGTCGTGGGTCACGGTATGACCGAAGAAACGCGAAGGAAAATA
GAAATTGAAGAGGCGCAGCGACGATGGAGAGAAAACAAGCGAAAGGAACT
CGCCATGAAAAGAGCCAGGGCGGCTAGTTCGAAACGAGGTCGAAAACGTA
CGAAGTTGGTTCATCAGCATCCGATAATTGACCACCCTGTACAGGTTGTT
TCGACAAGTCCTCCCTTGACCTCAGCGATTCCATTCCCAACTTCATCCGG
AGTGACAAGCGCGTTGCCAGTTTCTTCCGCGTTGCACAATCCTGGAACTA
ACGATCAGCTGCAAGTATCCTCTAGTGAGATTCCTTCGTCTGTTGTAAGA
TCAATGGGACTCTCGGTCTCAGACCCTATATCTACTTCAATTGCCATGTC
AAGTCCGGTACAGACGACTGTGCCTTTTCCCTTGTCGTCCGTTCCAATTC
CGTCCTCAGTTGCTGTTCCAGTGGTTCCCGCATTGACAATTCAACATGTA
CAATCGTCGAATTATGGGGTTGGTCACGATCCTGATACAGGATTCGTCTC
TCTTCCGTTGAGCACCTCGCACCAATTCTCAAACGTTGTAACGCCAGAAA
GAGTACCGCAGAATGGCATGAATGCAACAGCAGTGAACACTATCTCTTCA
GAAGACGGTACTATGGCTGTGTACGAACCTCTTCACCATAATACAAGGGA
CCAACCTCAGACTTCTGGAGCGCCTCCATCTCTACCTGTAGCACCTTTGG
TTTGCGCGACAGACTTAATCGAATCGCGACCGAGGCATAATGATGTACCT
AACCACATCATCGAAAGGAGGGAGTCAAAGCTACACTCCACAGCCCCAGA
TATGGGTCCTTCGCCCAACGACAAAATGAGTAACGAAGTTGGAGTACAAC
CGATCGATGAGGAAGGACAAACCTCTAGGGCAGAGAAAGATGAAGCGGAC
TACGTCGTTCAAGCACCAATGAGAGAACAGAGCAAGGATATTGGTGCAGA
CGTACGTGCCACAGAACTAGACGTTCGAGGAACAATTTCCACCATGGAAC
CTGAAGTTCAGAACATAAAGCCTTCTCCAGGCAGCGAAAGAACTTCAAAA
CAATATGAGGAGCATGCAAAAACATCTGAGGAGCATGGGCCAGGAAAGGA
TTTTGAAGATCCGCAGGAGTCTTTTCAGGAAGATGGCGGCGATGATCTTA
TGAACTCGGTAACTTGGCAAAGCCTTGGGAGCATTGAAAACCCGTGA