Gcaud1100.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1100.t1
Unique NameGcaud1100.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_259_length_33664_cov_4.059572contigNODE_259_length_33664_cov_4.059572:23987..24816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1100Gcaud1100Gracilaria caudata M_176_S67 malegeneNODE_259_length_33664_cov_4.059572 23987..24816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1100.t1Gcaud1100.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_259_length_33664_cov_4.059572 23987..24816 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1100.t1.start1Gcaud1100.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_259_length_33664_cov_4.059572 23987..23989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1100.t1.CDS1Gcaud1100.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_259_length_33664_cov_4.059572 23987..24564 +
Gcaud1100.t1.CDS2Gcaud1100.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_259_length_33664_cov_4.059572 24650..24662 +
Gcaud1100.t1.CDS3Gcaud1100.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_259_length_33664_cov_4.059572 24799..24816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1100.t1.exon1Gcaud1100.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_259_length_33664_cov_4.059572 23987..24564 +
Gcaud1100.t1.exon2Gcaud1100.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_259_length_33664_cov_4.059572 24650..24662 +
Gcaud1100.t1.exon3Gcaud1100.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_259_length_33664_cov_4.059572 24799..24816 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1100.t1.intron1Gcaud1100.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_259_length_33664_cov_4.059572 24565..24649 +
Gcaud1100.t1.intron2Gcaud1100.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_259_length_33664_cov_4.059572 24663..24798 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1100.t1.stop1Gcaud1100.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_259_length_33664_cov_4.059572 24814..24816 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1100.t1 ID=Gcaud1100.t1|Name=Gcaud1100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=203bp
MENDEIAAEQSAIGMDTASIFSHMRAEFVSVPSSEQEESTQSGNSIQDQE
EPYGSLRPTPTTDLPGKEKEQVSVLQPPSSISAADVLRWFVRTPVFILSD
VIVPIAQVSSILWYDCKQWILGARNREEKLYFLDDIPEPVDEFDSDENYD
RSPWEWNELDVELTQEEKQLKELQDNMRTVFGHVYGTFRRLLGVLPLSKR
CR*
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spliced messenger RNA

>Gcaud1100.t1 ID=Gcaud1100.t1|Name=Gcaud1100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=609bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:23987..24816+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACGACGAGATTGCAGCAGAACAATCAGCTATAGGAATGGACAC
AGCATCCATCTTTTCTCATATGAGGGCCGAATTTGTTTCGGTGCCCTCCA
GCGAGCAAGAAGAGTCAACTCAGAGTGGCAACTCAATTCAAGACCAAGAA
GAACCTTATGGGAGTCTACGACCAACTCCTACTACAGATCTACCTGGAAA
AGAAAAGGAACAAGTATCAGTTTTGCAACCCCCGTCTTCTATCTCAGCTG
CTGACGTTCTCCGCTGGTTTGTGCGGACCCCCGTTTTCATTCTATCGGAC
GTAATTGTCCCAATTGCGCAAGTGTCGTCCATTTTGTGGTATGATTGCAA
GCAATGGATTCTGGGGGCAAGGAATCGAGAGGAGAAGCTTTACTTCTTGG
ACGACATTCCGGAGCCAGTAGATGAATTCGACTCTGACGAAAACTACGAT
AGATCCCCATGGGAATGGAATGAGTTGGATGTCGAGTTGACGCAGGAGGA
GAAACAGTTGAAAGAACTTCAAGACAACATGCGAACAGTTTTCGGGCATG
TCTACGGCACGTTTCGCAGACTTCTCGGCGTTCTACCTTTGAGTAAACGG
TGTCGATGA
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protein sequence of Gcaud1100.t1

>Gcaud1100.t1 ID=Gcaud1100.t1|Name=Gcaud1100.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=203bp
MENDEIAAEQSAIGMDTASIFSHMRAEFVSVPSSEQEESTQSGNSIQDQE
EPYGSLRPTPTTDLPGKEKEQVSVLQPPSSISAADVLRWFVRTPVFILSD
VIVPIAQVSSILWYDCKQWILGARNREEKLYFLDDIPEPVDEFDSDENYD
RSPWEWNELDVELTQEEKQLKELQDNMRTVFGHVYGTFRRLLGVLPLSKR
CR*
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mRNA from alignment at NODE_259_length_33664_cov_4.059572:23987..24816+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1100.t1 ID=Gcaud1100.t1|Name=Gcaud1100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=830bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:23987..24816+ (Gracilaria caudata M_176_S67 male)
ATGGAAAACGACGAGATTGCAGCAGAACAATCAGCTATAGGAATGGACAC
AGCATCCATCTTTTCTCATATGAGGGCCGAATTTGTTTCGGTGCCCTCCA
GCGAGCAAGAAGAGTCAACTCAGAGTGGCAACTCAATTCAAGACCAAGAA
GAACCTTATGGGAGTCTACGACCAACTCCTACTACAGATCTACCTGGAAA
AGAAAAGGAACAAGTATCAGTTTTGCAACCCCCGTCTTCTATCTCAGCTG
CTGACGTTCTCCGCTGGTTTGTGCGGACCCCCGTTTTCATTCTATCGGAC
GTAATTGTCCCAATTGCGCAAGTGTCGTCCATTTTGTGGTATGATTGCAA
GCAATGGATTCTGGGGGCAAGGAATCGAGAGGAGAAGCTTTACTTCTTGG
ACGACATTCCGGAGCCAGTAGATGAATTCGACTCTGACGAAAACTACGAT
AGATCCCCATGGGAATGGAATGAGTTGGATGTCGAGTTGACGCAGGAGGA
GAAACAGTTGAAAGAACTTCAAGACAACATGCGAACAGTTTTCGGGCATG
TCTACGGCACGTTTCGCAGACTTCTCGGGTAGCTGTAAAGGGCCTTGAAG
TTACCTTGTGACCAAAGCAAATGATTCTTATCAAGCGATGGGTAAGCGGG
TTAACTACTGTAGCGTTCTACCTTTGGTACGTAAAAAGCTCCTAACTCTA
CCGGGATACTTGTTTGGAGAGTTGAACACTTATTCATAAGGAACACGTCA
CTGTAATCGCTACCCCAAACTCAAAAGCATTAACACTCTAGCTAATTTTA
TATTCAACAAAGAGTAAACGGTGTCGATGA
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Coding sequence (CDS) from alignment at NODE_259_length_33664_cov_4.059572:23987..24816+

>Gcaud1100.t1 ID=Gcaud1100.t1|Name=Gcaud1100.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=609bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:23987..24816+ (Gracilaria caudata M_176_S67 male)
ATGGAAAACGACGAGATTGCAGCAGAACAATCAGCTATAGGAATGGACAC
AGCATCCATCTTTTCTCATATGAGGGCCGAATTTGTTTCGGTGCCCTCCA
GCGAGCAAGAAGAGTCAACTCAGAGTGGCAACTCAATTCAAGACCAAGAA
GAACCTTATGGGAGTCTACGACCAACTCCTACTACAGATCTACCTGGAAA
AGAAAAGGAACAAGTATCAGTTTTGCAACCCCCGTCTTCTATCTCAGCTG
CTGACGTTCTCCGCTGGTTTGTGCGGACCCCCGTTTTCATTCTATCGGAC
GTAATTGTCCCAATTGCGCAAGTGTCGTCCATTTTGTGGTATGATTGCAA
GCAATGGATTCTGGGGGCAAGGAATCGAGAGGAGAAGCTTTACTTCTTGG
ACGACATTCCGGAGCCAGTAGATGAATTCGACTCTGACGAAAACTACGAT
AGATCCCCATGGGAATGGAATGAGTTGGATGTCGAGTTGACGCAGGAGGA
GAAACAGTTGAAAGAACTTCAAGACAACATGCGAACAGTTTTCGGGCATG
TCTACGGCACGTTTCGCAGACTTCTCGGCGTTCTACCTTTGAGTAAACGG
TGTCGATGA
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