Gcaud1099.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1099.t1
Unique Name	Gcaud1099.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_259_length_33664_cov_4.059572	contig	NODE_259_length_33664_cov_4.059572:22207..22980 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705590.1
PFAMs	CLP_protease
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01358
KEGG Pathway	ko04112,ko04212,map04112,map04212
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0010287,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071840
Evalue	1.14e-88
EggNOG OGs	COG0740@1\|root,KOG0840@2759\|Eukaryota
EC	3.4.21.92
Description	serine-type endopeptidase activity
COG category	OU
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1099	Gcaud1099	Gracilaria caudata M_176_S67 male	gene	NODE_259_length_33664_cov_4.059572 22207..22980 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1099.t1.stop1	Gcaud1099.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_259_length_33664_cov_4.059572 22207..22209 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1099.t1.CDS1	Gcaud1099.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_259_length_33664_cov_4.059572 22207..22980 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1099.t1.exon1	Gcaud1099.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_259_length_33664_cov_4.059572 22207..22980 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1099.t1.start1	Gcaud1099.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_259_length_33664_cov_4.059572 22978..22980 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1099.t1	Gcaud1099.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_259_length_33664_cov_4.059572 22207..22980 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_259_length_33664_cov_4.059572:22207..22980-
coding sequence from alignment at NODE_259_length_33664_cov_4.059572:22207..22980-

mRNA sequence

>Gcaud1099.t1 ID=Gcaud1099.t1|Name=Gcaud1099.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MAHCFPTFVGNHAIQLPSRPFRQTRVCTSRPATRSYVRMAGGVPKVPYKA
PGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKAN
VSMYFNCPGGTIPAGLAVYDCMRAMKYPVVTLNLGLAASMSAFLVAAGTK
GKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQF
TGRSNEELKKDLSRDMYLTAPEARTYGLIDNVLMPQVKGPSENFIAGLGS
PSRASLN*

spliced messenger RNA

>Gcaud1099.t1 ID=Gcaud1099.t1|Name=Gcaud1099.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:22207..22980- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCATTGCTTTCCTACATTTGTTGGCAACCATGCCATCCAGCTGCC
GTCCCGACCATTCAGACAAACGAGAGTTTGTACGAGTCGACCAGCAACGC
GCTCCTACGTGAGAATGGCTGGTGGGGTTCCAAAAGTGCCGTACAAGGCA
CCTGGCGCGCAGAACCATGAGTTCATTGATATATTCAACCGTCTGTACAG
AGAGCGAATTATATACGTGGGACAGGACCTCGATGATGAGTCGGCAAACC
AAATTATTGCAGTCCTGCTCTATCTGGAGAACGACGACGCCAAGGCGAAC
GTCTCTATGTATTTCAATTGCCCTGGTGGTACAATACCCGCTGGTCTGGC
CGTCTATGACTGCATGCGAGCTATGAAGTACCCAGTGGTAACCTTAAATC
TGGGTCTAGCTGCGTCTATGAGTGCGTTCCTGGTTGCTGCTGGAACAAAA
GGAAAACGCATGGCTCTTCCTAATTCCCGCTTTCTACTGCAAAGCCCTTC
TCTGCCGGATACGGTCAGAGGGCAAGCCTCCGATGTGGCAATTGAAGTAC
GAAACATTCTGAATCAACGCAATAGAATCATAGATGGTTTGCATCAGTTC
ACAGGAAGAAGCAACGAAGAACTCAAGAAGGACTTGAGCAGAGATATGTA
CTTAACGGCACCCGAGGCTCGGACTTACGGATTGATAGACAATGTCCTAA
TGCCACAAGTCAAGGGTCCGAGTGAGAACTTCATTGCTGGGCTCGGGTCA
CCCAGTCGAGCTTCGTTGAACTAA

protein sequence of Gcaud1099.t1

>Gcaud1099.t1 ID=Gcaud1099.t1|Name=Gcaud1099.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MAHCFPTFVGNHAIQLPSRPFRQTRVCTSRPATRSYVRMAGGVPKVPYKA
PGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKAN
VSMYFNCPGGTIPAGLAVYDCMRAMKYPVVTLNLGLAASMSAFLVAAGTK
GKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQF
TGRSNEELKKDLSRDMYLTAPEARTYGLIDNVLMPQVKGPSENFIAGLGS
PSRASLN*

mRNA from alignment at NODE_259_length_33664_cov_4.059572:22207..22980-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1099.t1 ID=Gcaud1099.t1|Name=Gcaud1099.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:22207..22980- (Gracilaria caudata M_176_S67 male)
ATGGCTCATTGCTTTCCTACATTTGTTGGCAACCATGCCATCCAGCTGCC
GTCCCGACCATTCAGACAAACGAGAGTTTGTACGAGTCGACCAGCAACGC
GCTCCTACGTGAGAATGGCTGGTGGGGTTCCAAAAGTGCCGTACAAGGCA
CCTGGCGCGCAGAACCATGAGTTCATTGATATATTCAACCGTCTGTACAG
AGAGCGAATTATATACGTGGGACAGGACCTCGATGATGAGTCGGCAAACC
AAATTATTGCAGTCCTGCTCTATCTGGAGAACGACGACGCCAAGGCGAAC
GTCTCTATGTATTTCAATTGCCCTGGTGGTACAATACCCGCTGGTCTGGC
CGTCTATGACTGCATGCGAGCTATGAAGTACCCAGTGGTAACCTTAAATC
TGGGTCTAGCTGCGTCTATGAGTGCGTTCCTGGTTGCTGCTGGAACAAAA
GGAAAACGCATGGCTCTTCCTAATTCCCGCTTTCTACTGCAAAGCCCTTC
TCTGCCGGATACGGTCAGAGGGCAAGCCTCCGATGTGGCAATTGAAGTAC
GAAACATTCTGAATCAACGCAATAGAATCATAGATGGTTTGCATCAGTTC
ACAGGAAGAAGCAACGAAGAACTCAAGAAGGACTTGAGCAGAGATATGTA
CTTAACGGCACCCGAGGCTCGGACTTACGGATTGATAGACAATGTCCTAA
TGCCACAAGTCAAGGGTCCGAGTGAGAACTTCATTGCTGGGCTCGGGTCA
CCCAGTCGAGCTTCGTTGAACTAA

Coding sequence (CDS) from alignment at NODE_259_length_33664_cov_4.059572:22207..22980-

>Gcaud1099.t1 ID=Gcaud1099.t1|Name=Gcaud1099.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:22207..22980- (Gracilaria caudata M_176_S67 male)
ATGGCTCATTGCTTTCCTACATTTGTTGGCAACCATGCCATCCAGCTGCC
GTCCCGACCATTCAGACAAACGAGAGTTTGTACGAGTCGACCAGCAACGC
GCTCCTACGTGAGAATGGCTGGTGGGGTTCCAAAAGTGCCGTACAAGGCA
CCTGGCGCGCAGAACCATGAGTTCATTGATATATTCAACCGTCTGTACAG
AGAGCGAATTATATACGTGGGACAGGACCTCGATGATGAGTCGGCAAACC
AAATTATTGCAGTCCTGCTCTATCTGGAGAACGACGACGCCAAGGCGAAC
GTCTCTATGTATTTCAATTGCCCTGGTGGTACAATACCCGCTGGTCTGGC
CGTCTATGACTGCATGCGAGCTATGAAGTACCCAGTGGTAACCTTAAATC
TGGGTCTAGCTGCGTCTATGAGTGCGTTCCTGGTTGCTGCTGGAACAAAA
GGAAAACGCATGGCTCTTCCTAATTCCCGCTTTCTACTGCAAAGCCCTTC
TCTGCCGGATACGGTCAGAGGGCAAGCCTCCGATGTGGCAATTGAAGTAC
GAAACATTCTGAATCAACGCAATAGAATCATAGATGGTTTGCATCAGTTC
ACAGGAAGAAGCAACGAAGAACTCAAGAAGGACTTGAGCAGAGATATGTA
CTTAACGGCACCCGAGGCTCGGACTTACGGATTGATAGACAATGTCCTAA
TGCCACAAGTCAAGGGTCCGAGTGAGAACTTCATTGCTGGGCTCGGGTCA
CCCAGTCGAGCTTCGTTGAACTAA