Gcaud1095.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1095.t1
Unique Name	Gcaud1095.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	403

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_259_length_33664_cov_4.059572	contig	NODE_259_length_33664_cov_4.059572:13866..15074 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1095	Gcaud1095	Gracilaria caudata M_176_S67 male	gene	NODE_259_length_33664_cov_4.059572 13866..15074 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1095.t1.stop1	Gcaud1095.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_259_length_33664_cov_4.059572 13866..13868 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1095.t1.CDS1	Gcaud1095.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_259_length_33664_cov_4.059572 13866..15074 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1095.t1.exon1	Gcaud1095.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_259_length_33664_cov_4.059572 13866..15074 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1095.t1.start1	Gcaud1095.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_259_length_33664_cov_4.059572 15072..15074 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1095.t1	Gcaud1095.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_259_length_33664_cov_4.059572 13866..15074 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_259_length_33664_cov_4.059572:13866..15074-
coding sequence from alignment at NODE_259_length_33664_cov_4.059572:13866..15074-

mRNA sequence

>Gcaud1095.t1 ID=Gcaud1095.t1|Name=Gcaud1095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=403bp
MYPPSRSLPRRHSLSTIRLSRSAAASCPSSPAFEDPSDIASASVRSRSEL
VLHGTPVQVVSHRASSASQKPQPYSPAPRSPQLSPSSSSPSTPSDMQLPP
PPPLPLPPSCHQLSSLSDTLDAPLSPLENELLSDDSSSFSSSEQLSNPPS
PNNFFIHNGYRYDGDVFELRPPQERSIASRPQRVLEHKPLLLANRQTFNR
VYSEGTYNARPSSLRQPVARARRRQPAHIDATDGTHLPGRKVTRPPSVRP
PPVQVPPAADNLAECIAAVRQNATVTGDDKLKGLLAYSAVPVTRQKGTPP
PAFLPPTPVAPPAPISMTQERENVKPLAGLDKRGRSYTLFAANSVYDPHV
EDTVSASAVLRSPKAHKAKGSKLGASSTKGGWFREKEREREKRPSFWKLL
SR*

spliced messenger RNA

>Gcaud1095.t1 ID=Gcaud1095.t1|Name=Gcaud1095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:13866..15074- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCCCCCGAGTAGGTCATTACCTCGTCGTCATTCTCTGTCCACTAT
TCGACTCTCCCGCTCCGCCGCCGCTTCTTGCCCTTCGTCTCCAGCGTTTG
AGGACCCGTCTGACATTGCTTCCGCCTCTGTTCGCTCGCGCTCCGAGCTT
GTGTTGCACGGCACGCCGGTGCAGGTGGTCTCTCACCGCGCGTCCAGCGC
TTCGCAAAAGCCGCAGCCCTACTCACCTGCGCCACGTTCGCCACAATTAT
CACCCAGTTCGTCGTCTCCGTCCACCCCGTCCGACATGCAGTTACCACCT
CCACCCCCTCTTCCGCTACCGCCGTCCTGTCATCAACTATCCTCGCTCTC
CGACACACTGGACGCGCCGCTATCGCCGCTGGAAAACGAGCTACTCAGTG
ACGACAGTTCGTCGTTCTCATCTTCGGAACAGCTTTCAAACCCACCGTCT
CCCAACAATTTTTTCATTCACAACGGCTACCGGTACGACGGCGATGTATT
CGAGTTACGTCCGCCGCAAGAACGCTCCATAGCATCGCGCCCGCAACGTG
TACTGGAGCACAAGCCATTACTACTAGCAAATCGACAGACGTTCAATCGC
GTGTACTCAGAAGGCACATACAATGCACGTCCATCGTCATTACGACAACC
AGTTGCTCGCGCGCGTCGTAGACAGCCTGCGCACATTGACGCCACAGATG
GTACACATCTGCCTGGAAGGAAGGTTACTCGGCCGCCTAGTGTTCGACCT
CCGCCGGTACAAGTGCCGCCTGCTGCAGACAATCTTGCGGAGTGTATTGC
GGCTGTGAGGCAGAATGCTACTGTGACTGGAGATGACAAATTGAAGGGAT
TGTTGGCGTATTCCGCAGTGCCTGTGACCAGACAAAAGGGAACGCCTCCG
CCGGCGTTTTTACCGCCCACGCCTGTGGCTCCGCCAGCGCCAATTTCGAT
GACGCAGGAGCGCGAAAACGTGAAACCTCTGGCTGGTCTCGACAAACGTG
GACGTAGTTATACTTTGTTTGCGGCGAATAGCGTTTATGATCCGCATGTG
GAGGATACTGTGTCCGCTAGTGCGGTGCTACGTTCGCCGAAGGCGCACAA
GGCGAAGGGCTCAAAGTTGGGCGCTAGTAGTACAAAGGGCGGTTGGTTCC
GAGAAAAGGAACGGGAACGAGAGAAAAGACCGTCGTTTTGGAAGTTGCTG
TCACGTTGA

protein sequence of Gcaud1095.t1

>Gcaud1095.t1 ID=Gcaud1095.t1|Name=Gcaud1095.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=403bp
MYPPSRSLPRRHSLSTIRLSRSAAASCPSSPAFEDPSDIASASVRSRSEL
VLHGTPVQVVSHRASSASQKPQPYSPAPRSPQLSPSSSSPSTPSDMQLPP
PPPLPLPPSCHQLSSLSDTLDAPLSPLENELLSDDSSSFSSSEQLSNPPS
PNNFFIHNGYRYDGDVFELRPPQERSIASRPQRVLEHKPLLLANRQTFNR
VYSEGTYNARPSSLRQPVARARRRQPAHIDATDGTHLPGRKVTRPPSVRP
PPVQVPPAADNLAECIAAVRQNATVTGDDKLKGLLAYSAVPVTRQKGTPP
PAFLPPTPVAPPAPISMTQERENVKPLAGLDKRGRSYTLFAANSVYDPHV
EDTVSASAVLRSPKAHKAKGSKLGASSTKGGWFREKEREREKRPSFWKLL
SR*

mRNA from alignment at NODE_259_length_33664_cov_4.059572:13866..15074-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1095.t1 ID=Gcaud1095.t1|Name=Gcaud1095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:13866..15074- (Gracilaria caudata M_176_S67 male)
ATGTATCCCCCGAGTAGGTCATTACCTCGTCGTCATTCTCTGTCCACTAT
TCGACTCTCCCGCTCCGCCGCCGCTTCTTGCCCTTCGTCTCCAGCGTTTG
AGGACCCGTCTGACATTGCTTCCGCCTCTGTTCGCTCGCGCTCCGAGCTT
GTGTTGCACGGCACGCCGGTGCAGGTGGTCTCTCACCGCGCGTCCAGCGC
TTCGCAAAAGCCGCAGCCCTACTCACCTGCGCCACGTTCGCCACAATTAT
CACCCAGTTCGTCGTCTCCGTCCACCCCGTCCGACATGCAGTTACCACCT
CCACCCCCTCTTCCGCTACCGCCGTCCTGTCATCAACTATCCTCGCTCTC
CGACACACTGGACGCGCCGCTATCGCCGCTGGAAAACGAGCTACTCAGTG
ACGACAGTTCGTCGTTCTCATCTTCGGAACAGCTTTCAAACCCACCGTCT
CCCAACAATTTTTTCATTCACAACGGCTACCGGTACGACGGCGATGTATT
CGAGTTACGTCCGCCGCAAGAACGCTCCATAGCATCGCGCCCGCAACGTG
TACTGGAGCACAAGCCATTACTACTAGCAAATCGACAGACGTTCAATCGC
GTGTACTCAGAAGGCACATACAATGCACGTCCATCGTCATTACGACAACC
AGTTGCTCGCGCGCGTCGTAGACAGCCTGCGCACATTGACGCCACAGATG
GTACACATCTGCCTGGAAGGAAGGTTACTCGGCCGCCTAGTGTTCGACCT
CCGCCGGTACAAGTGCCGCCTGCTGCAGACAATCTTGCGGAGTGTATTGC
GGCTGTGAGGCAGAATGCTACTGTGACTGGAGATGACAAATTGAAGGGAT
TGTTGGCGTATTCCGCAGTGCCTGTGACCAGACAAAAGGGAACGCCTCCG
CCGGCGTTTTTACCGCCCACGCCTGTGGCTCCGCCAGCGCCAATTTCGAT
GACGCAGGAGCGCGAAAACGTGAAACCTCTGGCTGGTCTCGACAAACGTG
GACGTAGTTATACTTTGTTTGCGGCGAATAGCGTTTATGATCCGCATGTG
GAGGATACTGTGTCCGCTAGTGCGGTGCTACGTTCGCCGAAGGCGCACAA
GGCGAAGGGCTCAAAGTTGGGCGCTAGTAGTACAAAGGGCGGTTGGTTCC
GAGAAAAGGAACGGGAACGAGAGAAAAGACCGTCGTTTTGGAAGTTGCTG
TCACGTTGA

Coding sequence (CDS) from alignment at NODE_259_length_33664_cov_4.059572:13866..15074-

>Gcaud1095.t1 ID=Gcaud1095.t1|Name=Gcaud1095.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1209bp|location=Sequence derived from alignment at NODE_259_length_33664_cov_4.059572:13866..15074- (Gracilaria caudata M_176_S67 male)
ATGTATCCCCCGAGTAGGTCATTACCTCGTCGTCATTCTCTGTCCACTAT
TCGACTCTCCCGCTCCGCCGCCGCTTCTTGCCCTTCGTCTCCAGCGTTTG
AGGACCCGTCTGACATTGCTTCCGCCTCTGTTCGCTCGCGCTCCGAGCTT
GTGTTGCACGGCACGCCGGTGCAGGTGGTCTCTCACCGCGCGTCCAGCGC
TTCGCAAAAGCCGCAGCCCTACTCACCTGCGCCACGTTCGCCACAATTAT
CACCCAGTTCGTCGTCTCCGTCCACCCCGTCCGACATGCAGTTACCACCT
CCACCCCCTCTTCCGCTACCGCCGTCCTGTCATCAACTATCCTCGCTCTC
CGACACACTGGACGCGCCGCTATCGCCGCTGGAAAACGAGCTACTCAGTG
ACGACAGTTCGTCGTTCTCATCTTCGGAACAGCTTTCAAACCCACCGTCT
CCCAACAATTTTTTCATTCACAACGGCTACCGGTACGACGGCGATGTATT
CGAGTTACGTCCGCCGCAAGAACGCTCCATAGCATCGCGCCCGCAACGTG
TACTGGAGCACAAGCCATTACTACTAGCAAATCGACAGACGTTCAATCGC
GTGTACTCAGAAGGCACATACAATGCACGTCCATCGTCATTACGACAACC
AGTTGCTCGCGCGCGTCGTAGACAGCCTGCGCACATTGACGCCACAGATG
GTACACATCTGCCTGGAAGGAAGGTTACTCGGCCGCCTAGTGTTCGACCT
CCGCCGGTACAAGTGCCGCCTGCTGCAGACAATCTTGCGGAGTGTATTGC
GGCTGTGAGGCAGAATGCTACTGTGACTGGAGATGACAAATTGAAGGGAT
TGTTGGCGTATTCCGCAGTGCCTGTGACCAGACAAAAGGGAACGCCTCCG
CCGGCGTTTTTACCGCCCACGCCTGTGGCTCCGCCAGCGCCAATTTCGAT
GACGCAGGAGCGCGAAAACGTGAAACCTCTGGCTGGTCTCGACAAACGTG
GACGTAGTTATACTTTGTTTGCGGCGAATAGCGTTTATGATCCGCATGTG
GAGGATACTGTGTCCGCTAGTGCGGTGCTACGTTCGCCGAAGGCGCACAA
GGCGAAGGGCTCAAAGTTGGGCGCTAGTAGTACAAAGGGCGGTTGGTTCC
GAGAAAAGGAACGGGAACGAGAGAAAAGACCGTCGTTTTGGAAGTTGCTG
TCACGTTGA