Gcaud1078.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1078.t1
Unique Name	Gcaud1078.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2477_length_5545_cov_5.474881	contig	NODE_2477_length_5545_cov_5.474881:3308..5212 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1078	Gcaud1078	Gracilaria caudata M_176_S67 male	gene	NODE_2477_length_5545_cov_5.474881 3308..5212 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1078.t1.start1	Gcaud1078.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2477_length_5545_cov_5.474881 3308..3310 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1078.t1.CDS1	Gcaud1078.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2477_length_5545_cov_5.474881 3308..5212 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1078.t1.exon1	Gcaud1078.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2477_length_5545_cov_5.474881 3308..5212 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1078.t1.stop1	Gcaud1078.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2477_length_5545_cov_5.474881 5210..5212 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1078.t1	Gcaud1078.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2477_length_5545_cov_5.474881 3308..5212 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2477_length_5545_cov_5.474881:3308..5212+
coding sequence from alignment at NODE_2477_length_5545_cov_5.474881:3308..5212+

mRNA sequence

>Gcaud1078.t1 ID=Gcaud1078.t1|Name=Gcaud1078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=635bp
MASVHHSRERALAKALALEQKILRLDDIDAMTDLGFLLLYDKNFASQRSR
GVQMFERAIKQAQDPVAMGCLAMYLLRNGDSEDHRRAAWLFERSLKLKES
SATLCKLAECYETGSGVEKNANHAVQLYERALRFDQDPEIMYKQAWVMLK
TPSLRDQQQRALALFKKAIDLSSKPHMMNNLGTLYHRGEGNLSRCAKKAI
KWYLRAIRTSKYVTSMANLACLLLENEPSGADVQQAVRLLEDAMEDDQEQ
DVNIILKLAETYVEYGINIERAVSLYETAAIRFNSKKARQVLLALWFEGV
GGSEFNDSRIFDFCRNDYNCNGFLGSGLILGDMLWTGTSHVVTNRRGAIE
FLASIPAYDEHCSLSLMLRHDLSFHPGGEKSAQRLMKRLNANIDRSKLTV
EEGIILSEGDEKSISDDKLLAMECFRRNGEDKNLNWLSAYLRMGRVKLPF
DGRLECVTNPIRRFAVFKNIASLNLASLLLEIEGEQQEAVTVLEDLMNCE
LRLIAMLNLAYILMNDIEGVSKNWARGMQLLEDAVRETNDASARAMLANS
LSERSDSDEGDVERGWELWRGVEWELREEEEELHNVRRLVSASSKMKWDR
LDHENKKRVSIDDRTLSSKGKQKRKIRVVVEEEQ*

spliced messenger RNA

>Gcaud1078.t1 ID=Gcaud1078.t1|Name=Gcaud1078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_2477_length_5545_cov_5.474881:3308..5212+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGTTCATCACAGCCGCGAACGCGCACTCGCAAAGGCGCTTGC
GCTCGAGCAAAAGATATTACGTCTCGATGACATCGACGCCATGACTGATT
TAGGTTTTTTGTTGCTGTACGATAAGAACTTTGCATCACAACGCAGTCGA
GGAGTTCAGATGTTTGAACGCGCCATCAAACAGGCACAAGACCCAGTCGC
CATGGGTTGTCTGGCTATGTATCTTCTAAGAAATGGGGACAGCGAAGATC
ATCGTCGCGCTGCGTGGCTGTTCGAACGCTCTTTGAAACTGAAAGAGAGC
AGTGCCACACTCTGCAAGTTGGCAGAGTGTTATGAAACTGGCAGTGGTGT
GGAAAAGAATGCCAACCATGCAGTACAGTTGTATGAACGAGCTTTGCGGT
TTGACCAAGATCCCGAAATCATGTACAAACAAGCCTGGGTCATGCTCAAA
ACACCAAGTCTGCGAGATCAACAGCAACGGGCATTAGCACTTTTTAAGAA
GGCAATTGATTTGTCTTCAAAACCCCACATGATGAACAATTTGGGAACTT
TGTATCATAGAGGAGAGGGCAATCTAAGCCGGTGTGCTAAGAAGGCTATT
AAGTGGTATCTGCGTGCAATTCGAACATCAAAGTATGTGACCTCTATGGC
TAATCTGGCTTGCCTTCTGTTGGAAAATGAGCCTAGTGGCGCCGATGTGC
AGCAGGCGGTTCGTTTATTAGAAGATGCAATGGAAGACGACCAAGAGCAA
GATGTGAACATCATTCTGAAGCTGGCCGAAACTTACGTGGAGTATGGCAT
TAACATTGAGCGAGCTGTTTCATTGTATGAAACCGCAGCAATTCGTTTCA
ATTCGAAAAAGGCTAGGCAAGTGCTGCTTGCATTATGGTTTGAAGGTGTA
GGTGGCTCGGAGTTTAATGACAGCCGTATATTCGACTTCTGTCGAAATGA
CTACAACTGTAACGGATTCTTGGGTTCCGGTTTGATTTTAGGAGACATGT
TGTGGACCGGTACAAGCCATGTTGTGACGAATCGGAGAGGAGCCATTGAG
TTTTTGGCGTCGATTCCTGCGTATGATGAACATTGCTCTCTTTCATTAAT
GCTGAGACATGACTTAAGTTTTCATCCTGGCGGAGAGAAGAGTGCTCAAA
GGCTTATGAAGAGGCTCAATGCCAATATTGATAGATCTAAACTCACAGTT
GAAGAGGGTATTATTCTCAGCGAGGGAGATGAGAAGTCGATAAGCGATGA
CAAACTGCTGGCAATGGAGTGCTTTCGGCGTAATGGAGAGGATAAAAACC
TTAATTGGTTGAGTGCATACCTGCGAATGGGGCGCGTCAAACTACCATTT
GATGGCCGGCTGGAATGTGTGACCAATCCGATAAGAAGGTTTGCTGTGTT
TAAAAACATTGCTTCTCTAAATCTGGCCAGCCTTTTACTTGAGATTGAAG
GCGAGCAACAAGAAGCCGTGACAGTACTGGAAGATCTGATGAACTGTGAG
TTGAGGTTGATCGCAATGCTGAACCTGGCGTACATATTAATGAACGACAT
TGAAGGAGTGTCGAAGAATTGGGCAAGAGGGATGCAACTTCTAGAGGACG
CTGTGAGGGAGACGAACGACGCTTCTGCTCGAGCAATGTTGGCCAACTCG
TTATCGGAACGATCGGACTCGGACGAAGGCGACGTGGAGCGAGGATGGGA
ACTGTGGCGAGGCGTTGAGTGGGAGTTGAGGGAAGAGGAGGAGGAGTTGC
ATAATGTGCGGCGACTAGTTTCGGCTAGCAGCAAGATGAAATGGGATAGG
CTTGACCACGAAAACAAGAAAAGAGTGAGCATTGATGACAGAACGCTCTC
ATCGAAGGGAAAGCAAAAACGCAAAATCCGCGTCGTGGTAGAGGAGGAGC
AGTAA

protein sequence of Gcaud1078.t1

>Gcaud1078.t1 ID=Gcaud1078.t1|Name=Gcaud1078.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=635bp
MASVHHSRERALAKALALEQKILRLDDIDAMTDLGFLLLYDKNFASQRSR
GVQMFERAIKQAQDPVAMGCLAMYLLRNGDSEDHRRAAWLFERSLKLKES
SATLCKLAECYETGSGVEKNANHAVQLYERALRFDQDPEIMYKQAWVMLK
TPSLRDQQQRALALFKKAIDLSSKPHMMNNLGTLYHRGEGNLSRCAKKAI
KWYLRAIRTSKYVTSMANLACLLLENEPSGADVQQAVRLLEDAMEDDQEQ
DVNIILKLAETYVEYGINIERAVSLYETAAIRFNSKKARQVLLALWFEGV
GGSEFNDSRIFDFCRNDYNCNGFLGSGLILGDMLWTGTSHVVTNRRGAIE
FLASIPAYDEHCSLSLMLRHDLSFHPGGEKSAQRLMKRLNANIDRSKLTV
EEGIILSEGDEKSISDDKLLAMECFRRNGEDKNLNWLSAYLRMGRVKLPF
DGRLECVTNPIRRFAVFKNIASLNLASLLLEIEGEQQEAVTVLEDLMNCE
LRLIAMLNLAYILMNDIEGVSKNWARGMQLLEDAVRETNDASARAMLANS
LSERSDSDEGDVERGWELWRGVEWELREEEEELHNVRRLVSASSKMKWDR
LDHENKKRVSIDDRTLSSKGKQKRKIRVVVEEEQ*

mRNA from alignment at NODE_2477_length_5545_cov_5.474881:3308..5212+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1078.t1 ID=Gcaud1078.t1|Name=Gcaud1078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_2477_length_5545_cov_5.474881:3308..5212+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCCGTTCATCACAGCCGCGAACGCGCACTCGCAAAGGCGCTTGC
GCTCGAGCAAAAGATATTACGTCTCGATGACATCGACGCCATGACTGATT
TAGGTTTTTTGTTGCTGTACGATAAGAACTTTGCATCACAACGCAGTCGA
GGAGTTCAGATGTTTGAACGCGCCATCAAACAGGCACAAGACCCAGTCGC
CATGGGTTGTCTGGCTATGTATCTTCTAAGAAATGGGGACAGCGAAGATC
ATCGTCGCGCTGCGTGGCTGTTCGAACGCTCTTTGAAACTGAAAGAGAGC
AGTGCCACACTCTGCAAGTTGGCAGAGTGTTATGAAACTGGCAGTGGTGT
GGAAAAGAATGCCAACCATGCAGTACAGTTGTATGAACGAGCTTTGCGGT
TTGACCAAGATCCCGAAATCATGTACAAACAAGCCTGGGTCATGCTCAAA
ACACCAAGTCTGCGAGATCAACAGCAACGGGCATTAGCACTTTTTAAGAA
GGCAATTGATTTGTCTTCAAAACCCCACATGATGAACAATTTGGGAACTT
TGTATCATAGAGGAGAGGGCAATCTAAGCCGGTGTGCTAAGAAGGCTATT
AAGTGGTATCTGCGTGCAATTCGAACATCAAAGTATGTGACCTCTATGGC
TAATCTGGCTTGCCTTCTGTTGGAAAATGAGCCTAGTGGCGCCGATGTGC
AGCAGGCGGTTCGTTTATTAGAAGATGCAATGGAAGACGACCAAGAGCAA
GATGTGAACATCATTCTGAAGCTGGCCGAAACTTACGTGGAGTATGGCAT
TAACATTGAGCGAGCTGTTTCATTGTATGAAACCGCAGCAATTCGTTTCA
ATTCGAAAAAGGCTAGGCAAGTGCTGCTTGCATTATGGTTTGAAGGTGTA
GGTGGCTCGGAGTTTAATGACAGCCGTATATTCGACTTCTGTCGAAATGA
CTACAACTGTAACGGATTCTTGGGTTCCGGTTTGATTTTAGGAGACATGT
TGTGGACCGGTACAAGCCATGTTGTGACGAATCGGAGAGGAGCCATTGAG
TTTTTGGCGTCGATTCCTGCGTATGATGAACATTGCTCTCTTTCATTAAT
GCTGAGACATGACTTAAGTTTTCATCCTGGCGGAGAGAAGAGTGCTCAAA
GGCTTATGAAGAGGCTCAATGCCAATATTGATAGATCTAAACTCACAGTT
GAAGAGGGTATTATTCTCAGCGAGGGAGATGAGAAGTCGATAAGCGATGA
CAAACTGCTGGCAATGGAGTGCTTTCGGCGTAATGGAGAGGATAAAAACC
TTAATTGGTTGAGTGCATACCTGCGAATGGGGCGCGTCAAACTACCATTT
GATGGCCGGCTGGAATGTGTGACCAATCCGATAAGAAGGTTTGCTGTGTT
TAAAAACATTGCTTCTCTAAATCTGGCCAGCCTTTTACTTGAGATTGAAG
GCGAGCAACAAGAAGCCGTGACAGTACTGGAAGATCTGATGAACTGTGAG
TTGAGGTTGATCGCAATGCTGAACCTGGCGTACATATTAATGAACGACAT
TGAAGGAGTGTCGAAGAATTGGGCAAGAGGGATGCAACTTCTAGAGGACG
CTGTGAGGGAGACGAACGACGCTTCTGCTCGAGCAATGTTGGCCAACTCG
TTATCGGAACGATCGGACTCGGACGAAGGCGACGTGGAGCGAGGATGGGA
ACTGTGGCGAGGCGTTGAGTGGGAGTTGAGGGAAGAGGAGGAGGAGTTGC
ATAATGTGCGGCGACTAGTTTCGGCTAGCAGCAAGATGAAATGGGATAGG
CTTGACCACGAAAACAAGAAAAGAGTGAGCATTGATGACAGAACGCTCTC
ATCGAAGGGAAAGCAAAAACGCAAAATCCGCGTCGTGGTAGAGGAGGAGC
AGTAA

Coding sequence (CDS) from alignment at NODE_2477_length_5545_cov_5.474881:3308..5212+

>Gcaud1078.t1 ID=Gcaud1078.t1|Name=Gcaud1078.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1905bp|location=Sequence derived from alignment at NODE_2477_length_5545_cov_5.474881:3308..5212+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCCGTTCATCACAGCCGCGAACGCGCACTCGCAAAGGCGCTTGC
GCTCGAGCAAAAGATATTACGTCTCGATGACATCGACGCCATGACTGATT
TAGGTTTTTTGTTGCTGTACGATAAGAACTTTGCATCACAACGCAGTCGA
GGAGTTCAGATGTTTGAACGCGCCATCAAACAGGCACAAGACCCAGTCGC
CATGGGTTGTCTGGCTATGTATCTTCTAAGAAATGGGGACAGCGAAGATC
ATCGTCGCGCTGCGTGGCTGTTCGAACGCTCTTTGAAACTGAAAGAGAGC
AGTGCCACACTCTGCAAGTTGGCAGAGTGTTATGAAACTGGCAGTGGTGT
GGAAAAGAATGCCAACCATGCAGTACAGTTGTATGAACGAGCTTTGCGGT
TTGACCAAGATCCCGAAATCATGTACAAACAAGCCTGGGTCATGCTCAAA
ACACCAAGTCTGCGAGATCAACAGCAACGGGCATTAGCACTTTTTAAGAA
GGCAATTGATTTGTCTTCAAAACCCCACATGATGAACAATTTGGGAACTT
TGTATCATAGAGGAGAGGGCAATCTAAGCCGGTGTGCTAAGAAGGCTATT
AAGTGGTATCTGCGTGCAATTCGAACATCAAAGTATGTGACCTCTATGGC
TAATCTGGCTTGCCTTCTGTTGGAAAATGAGCCTAGTGGCGCCGATGTGC
AGCAGGCGGTTCGTTTATTAGAAGATGCAATGGAAGACGACCAAGAGCAA
GATGTGAACATCATTCTGAAGCTGGCCGAAACTTACGTGGAGTATGGCAT
TAACATTGAGCGAGCTGTTTCATTGTATGAAACCGCAGCAATTCGTTTCA
ATTCGAAAAAGGCTAGGCAAGTGCTGCTTGCATTATGGTTTGAAGGTGTA
GGTGGCTCGGAGTTTAATGACAGCCGTATATTCGACTTCTGTCGAAATGA
CTACAACTGTAACGGATTCTTGGGTTCCGGTTTGATTTTAGGAGACATGT
TGTGGACCGGTACAAGCCATGTTGTGACGAATCGGAGAGGAGCCATTGAG
TTTTTGGCGTCGATTCCTGCGTATGATGAACATTGCTCTCTTTCATTAAT
GCTGAGACATGACTTAAGTTTTCATCCTGGCGGAGAGAAGAGTGCTCAAA
GGCTTATGAAGAGGCTCAATGCCAATATTGATAGATCTAAACTCACAGTT
GAAGAGGGTATTATTCTCAGCGAGGGAGATGAGAAGTCGATAAGCGATGA
CAAACTGCTGGCAATGGAGTGCTTTCGGCGTAATGGAGAGGATAAAAACC
TTAATTGGTTGAGTGCATACCTGCGAATGGGGCGCGTCAAACTACCATTT
GATGGCCGGCTGGAATGTGTGACCAATCCGATAAGAAGGTTTGCTGTGTT
TAAAAACATTGCTTCTCTAAATCTGGCCAGCCTTTTACTTGAGATTGAAG
GCGAGCAACAAGAAGCCGTGACAGTACTGGAAGATCTGATGAACTGTGAG
TTGAGGTTGATCGCAATGCTGAACCTGGCGTACATATTAATGAACGACAT
TGAAGGAGTGTCGAAGAATTGGGCAAGAGGGATGCAACTTCTAGAGGACG
CTGTGAGGGAGACGAACGACGCTTCTGCTCGAGCAATGTTGGCCAACTCG
TTATCGGAACGATCGGACTCGGACGAAGGCGACGTGGAGCGAGGATGGGA
ACTGTGGCGAGGCGTTGAGTGGGAGTTGAGGGAAGAGGAGGAGGAGTTGC
ATAATGTGCGGCGACTAGTTTCGGCTAGCAGCAAGATGAAATGGGATAGG
CTTGACCACGAAAACAAGAAAAGAGTGAGCATTGATGACAGAACGCTCTC
ATCGAAGGGAAAGCAAAAACGCAAAATCCGCGTCGTGGTAGAGGAGGAGC
AGTAA