Gcaud1077.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1077.t1
Unique NameGcaud1077.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1923_length_7654_cov_4.381330contigNODE_1923_length_7654_cov_4.381330:5905..6474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1077Gcaud1077Gracilaria caudata M_176_S67 malegeneNODE_1923_length_7654_cov_4.381330 5905..6474 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1077.t1.stop1Gcaud1077.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1923_length_7654_cov_4.381330 5905..5907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1077.t1.CDS1Gcaud1077.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1923_length_7654_cov_4.381330 5905..6474 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1077.t1.exon1Gcaud1077.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1923_length_7654_cov_4.381330 5905..6474 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1077.t1.start1Gcaud1077.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1923_length_7654_cov_4.381330 6472..6474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1077.t1Gcaud1077.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1923_length_7654_cov_4.381330 5905..6474 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1077.t1 ID=Gcaud1077.t1|Name=Gcaud1077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=190bp
MQFRHLLLMVLIQNLFLYAFGQLLQAKLTGPLLKFTEARVDCVLQAFGSP
LDGKGVRIEIRDDGFNCPTWHPMAPPIEQSAEFINGEAEVAFSVWSDHFG
LCITGISVWVTLPYPCQSKERGIMMVNWGHGWGFLGKCKALEQVCEGVTS
VAALPYIDMWCRRPPSAGGQPEEMRVFWTSSQDNDNDQC*
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spliced messenger RNA

>Gcaud1077.t1 ID=Gcaud1077.t1|Name=Gcaud1077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=570bp|location=Sequence derived from alignment at NODE_1923_length_7654_cov_4.381330:5905..6474- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCAGGCACTTGCTTTTGATGGTTTTGATTCAGAATCTCTTTTT
GTATGCCTTTGGGCAACTTTTGCAGGCAAAACTCACTGGTCCACTGCTGA
AATTCACAGAGGCACGAGTGGACTGTGTTCTACAGGCATTTGGAAGCCCT
CTCGATGGGAAAGGTGTGCGAATTGAGATCCGCGATGATGGATTCAACTG
TCCGACTTGGCACCCGATGGCTCCACCAATTGAGCAAAGCGCCGAGTTCA
TAAACGGTGAAGCAGAAGTTGCATTTTCCGTTTGGTCGGACCACTTCGGC
CTTTGCATTACGGGGATTTCCGTGTGGGTTACGCTTCCATACCCATGCCA
ATCGAAGGAGAGAGGGATAATGATGGTGAACTGGGGGCATGGATGGGGAT
TCCTCGGGAAATGCAAGGCGTTGGAGCAAGTTTGTGAGGGCGTGACCTCT
GTGGCTGCACTGCCGTACATTGATATGTGGTGCCGTCGCCCACCGAGTGC
TGGTGGTCAACCGGAGGAGATGCGAGTGTTTTGGACTTCGTCCCAGGACA
ATGACAATGACCAATGTTAG
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protein sequence of Gcaud1077.t1

>Gcaud1077.t1 ID=Gcaud1077.t1|Name=Gcaud1077.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=190bp
MQFRHLLLMVLIQNLFLYAFGQLLQAKLTGPLLKFTEARVDCVLQAFGSP
LDGKGVRIEIRDDGFNCPTWHPMAPPIEQSAEFINGEAEVAFSVWSDHFG
LCITGISVWVTLPYPCQSKERGIMMVNWGHGWGFLGKCKALEQVCEGVTS
VAALPYIDMWCRRPPSAGGQPEEMRVFWTSSQDNDNDQC*
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mRNA from alignment at NODE_1923_length_7654_cov_4.381330:5905..6474-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1077.t1 ID=Gcaud1077.t1|Name=Gcaud1077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=570bp|location=Sequence derived from alignment at NODE_1923_length_7654_cov_4.381330:5905..6474- (Gracilaria caudata M_176_S67 male)
ATGCAGTTCAGGCACTTGCTTTTGATGGTTTTGATTCAGAATCTCTTTTT
GTATGCCTTTGGGCAACTTTTGCAGGCAAAACTCACTGGTCCACTGCTGA
AATTCACAGAGGCACGAGTGGACTGTGTTCTACAGGCATTTGGAAGCCCT
CTCGATGGGAAAGGTGTGCGAATTGAGATCCGCGATGATGGATTCAACTG
TCCGACTTGGCACCCGATGGCTCCACCAATTGAGCAAAGCGCCGAGTTCA
TAAACGGTGAAGCAGAAGTTGCATTTTCCGTTTGGTCGGACCACTTCGGC
CTTTGCATTACGGGGATTTCCGTGTGGGTTACGCTTCCATACCCATGCCA
ATCGAAGGAGAGAGGGATAATGATGGTGAACTGGGGGCATGGATGGGGAT
TCCTCGGGAAATGCAAGGCGTTGGAGCAAGTTTGTGAGGGCGTGACCTCT
GTGGCTGCACTGCCGTACATTGATATGTGGTGCCGTCGCCCACCGAGTGC
TGGTGGTCAACCGGAGGAGATGCGAGTGTTTTGGACTTCGTCCCAGGACA
ATGACAATGACCAATGTTAG
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Coding sequence (CDS) from alignment at NODE_1923_length_7654_cov_4.381330:5905..6474-

>Gcaud1077.t1 ID=Gcaud1077.t1|Name=Gcaud1077.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=570bp|location=Sequence derived from alignment at NODE_1923_length_7654_cov_4.381330:5905..6474- (Gracilaria caudata M_176_S67 male)
ATGCAGTTCAGGCACTTGCTTTTGATGGTTTTGATTCAGAATCTCTTTTT
GTATGCCTTTGGGCAACTTTTGCAGGCAAAACTCACTGGTCCACTGCTGA
AATTCACAGAGGCACGAGTGGACTGTGTTCTACAGGCATTTGGAAGCCCT
CTCGATGGGAAAGGTGTGCGAATTGAGATCCGCGATGATGGATTCAACTG
TCCGACTTGGCACCCGATGGCTCCACCAATTGAGCAAAGCGCCGAGTTCA
TAAACGGTGAAGCAGAAGTTGCATTTTCCGTTTGGTCGGACCACTTCGGC
CTTTGCATTACGGGGATTTCCGTGTGGGTTACGCTTCCATACCCATGCCA
ATCGAAGGAGAGAGGGATAATGATGGTGAACTGGGGGCATGGATGGGGAT
TCCTCGGGAAATGCAAGGCGTTGGAGCAAGTTTGTGAGGGCGTGACCTCT
GTGGCTGCACTGCCGTACATTGATATGTGGTGCCGTCGCCCACCGAGTGC
TGGTGGTCAACCGGAGGAGATGCGAGTGTTTTGGACTTCGTCCCAGGACA
ATGACAATGACCAATGTTAG
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