Gcaud1069.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1069.t1
Unique Name	Gcaud1069.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_966_length_15672_cov_4.486041	contig	NODE_966_length_15672_cov_4.486041:367..1503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705722.1
Max annot lvl	130081.XP_005705722.1\|-
Evalue	2.82e-115
EggNOG OGs	COG0473@1\|root,KOG0786@2759\|Eukaryota
Description	3-isopropylmalate dehydrogenase activity
COG category	CE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1069	Gcaud1069	Gracilaria caudata M_176_S67 male	gene	NODE_966_length_15672_cov_4.486041 367..1503 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1069.t1.start1	Gcaud1069.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_966_length_15672_cov_4.486041 367..369 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1069.t1.CDS1	Gcaud1069.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_966_length_15672_cov_4.486041 367..1503 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1069.t1.exon1	Gcaud1069.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_966_length_15672_cov_4.486041 367..1503 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1069.t1.stop1	Gcaud1069.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_966_length_15672_cov_4.486041 1501..1503 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1069.t1	Gcaud1069.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_966_length_15672_cov_4.486041 367..1503 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_966_length_15672_cov_4.486041:367..1503+
coding sequence from alignment at NODE_966_length_15672_cov_4.486041:367..1503+

mRNA sequence

>Gcaud1069.t1 ID=Gcaud1069.t1|Name=Gcaud1069.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=379bp
MGPVKGSSQNPYKIAVLEGDGAGPSVAASAVRVLEELTNYAEIHFDFKYA
DYGAPAYEKSGKLVTPDTLQVCRESDAVLRSYQGFKRGVGKDGSAHLQLR
DELGLFAQFRPVIIYPALASQSTLRKEVVEAVDIMLVREISAGALGAESI
TKDESDVSEIRYSKDQINAIANAALQVAVQRNGNILNVDKADALSISRFW
RRNVHETIEREAKGNDGILLTDMFVDDFVREVILRPGDFDVVVTSNLFGD
ILAEVIAALAGPSRYSPSFWVNREGLGVYGPADIYNASAYPDRNVEASPI
ALIRSASMMLKYALEEPAAADIIQQALRKSMEEIIGSPSSNGNGSSAMGP
SESTDIVTRSMQLMRQYEQVCDPTECGE*

spliced messenger RNA

>Gcaud1069.t1 ID=Gcaud1069.t1|Name=Gcaud1069.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:367..1503+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCCCGTCAAGGGCTCCTCGCAGAATCCTTACAAGATCGCCGTGTT
GGAAGGTGATGGTGCCGGCCCTTCCGTTGCTGCTTCTGCCGTGCGTGTGT
TGGAGGAGCTGACCAACTATGCCGAGATCCACTTCGATTTCAAGTATGCC
GATTATGGTGCCCCTGCGTACGAGAAGAGTGGCAAGCTAGTCACGCCGGA
TACGCTGCAGGTTTGTCGTGAGTCTGATGCTGTTTTGCGTAGTTATCAGG
GTTTCAAAAGAGGCGTTGGAAAGGATGGTAGCGCTCATCTGCAGCTGAGA
GATGAACTTGGTTTGTTTGCTCAGTTTCGACCTGTCATTATTTATCCGGC
TTTGGCATCGCAAAGCACTCTTAGGAAAGAGGTTGTTGAGGCAGTCGATA
TAATGCTGGTCCGAGAAATTTCAGCCGGTGCGCTCGGAGCGGAAAGTATC
ACAAAGGATGAGAGCGATGTGAGTGAGATAAGATACTCTAAGGACCAAAT
CAACGCAATCGCAAACGCAGCTCTTCAGGTGGCTGTGCAGCGAAACGGAA
ACATTCTCAATGTTGACAAGGCTGATGCATTGTCAATCTCAAGGTTTTGG
AGAAGAAACGTGCACGAAACCATCGAACGTGAGGCAAAGGGCAATGATGG
TATATTGCTCACCGATATGTTCGTCGATGATTTTGTGAGAGAGGTCATCC
TGCGTCCCGGGGATTTTGATGTTGTTGTCACAAGTAATCTTTTCGGTGAT
ATTCTTGCCGAAGTCATTGCAGCTTTGGCCGGGCCCTCTCGATATTCTCC
AAGTTTCTGGGTCAATCGTGAGGGACTGGGTGTGTACGGCCCAGCCGATA
TTTACAATGCTTCTGCGTATCCGGACAGAAACGTGGAAGCATCTCCCATT
GCGTTGATTAGATCTGCTAGTATGATGCTCAAGTACGCTCTCGAAGAACC
TGCTGCTGCAGATATTATTCAGCAGGCGTTGAGGAAGAGTATGGAAGAGA
TCATTGGATCACCTTCTTCGAACGGAAATGGTTCTTCAGCGATGGGACCT
TCAGAATCCACTGATATTGTGACCAGGAGCATGCAGTTGATGAGACAATA
CGAACAGGTTTGCGATCCAACTGAATGTGGAGAATAG

protein sequence of Gcaud1069.t1

>Gcaud1069.t1 ID=Gcaud1069.t1|Name=Gcaud1069.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=379bp
MGPVKGSSQNPYKIAVLEGDGAGPSVAASAVRVLEELTNYAEIHFDFKYA
DYGAPAYEKSGKLVTPDTLQVCRESDAVLRSYQGFKRGVGKDGSAHLQLR
DELGLFAQFRPVIIYPALASQSTLRKEVVEAVDIMLVREISAGALGAESI
TKDESDVSEIRYSKDQINAIANAALQVAVQRNGNILNVDKADALSISRFW
RRNVHETIEREAKGNDGILLTDMFVDDFVREVILRPGDFDVVVTSNLFGD
ILAEVIAALAGPSRYSPSFWVNREGLGVYGPADIYNASAYPDRNVEASPI
ALIRSASMMLKYALEEPAAADIIQQALRKSMEEIIGSPSSNGNGSSAMGP
SESTDIVTRSMQLMRQYEQVCDPTECGE*

mRNA from alignment at NODE_966_length_15672_cov_4.486041:367..1503+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1069.t1 ID=Gcaud1069.t1|Name=Gcaud1069.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:367..1503+ (Gracilaria caudata M_176_S67 male)
ATGGGCCCCGTCAAGGGCTCCTCGCAGAATCCTTACAAGATCGCCGTGTT
GGAAGGTGATGGTGCCGGCCCTTCCGTTGCTGCTTCTGCCGTGCGTGTGT
TGGAGGAGCTGACCAACTATGCCGAGATCCACTTCGATTTCAAGTATGCC
GATTATGGTGCCCCTGCGTACGAGAAGAGTGGCAAGCTAGTCACGCCGGA
TACGCTGCAGGTTTGTCGTGAGTCTGATGCTGTTTTGCGTAGTTATCAGG
GTTTCAAAAGAGGCGTTGGAAAGGATGGTAGCGCTCATCTGCAGCTGAGA
GATGAACTTGGTTTGTTTGCTCAGTTTCGACCTGTCATTATTTATCCGGC
TTTGGCATCGCAAAGCACTCTTAGGAAAGAGGTTGTTGAGGCAGTCGATA
TAATGCTGGTCCGAGAAATTTCAGCCGGTGCGCTCGGAGCGGAAAGTATC
ACAAAGGATGAGAGCGATGTGAGTGAGATAAGATACTCTAAGGACCAAAT
CAACGCAATCGCAAACGCAGCTCTTCAGGTGGCTGTGCAGCGAAACGGAA
ACATTCTCAATGTTGACAAGGCTGATGCATTGTCAATCTCAAGGTTTTGG
AGAAGAAACGTGCACGAAACCATCGAACGTGAGGCAAAGGGCAATGATGG
TATATTGCTCACCGATATGTTCGTCGATGATTTTGTGAGAGAGGTCATCC
TGCGTCCCGGGGATTTTGATGTTGTTGTCACAAGTAATCTTTTCGGTGAT
ATTCTTGCCGAAGTCATTGCAGCTTTGGCCGGGCCCTCTCGATATTCTCC
AAGTTTCTGGGTCAATCGTGAGGGACTGGGTGTGTACGGCCCAGCCGATA
TTTACAATGCTTCTGCGTATCCGGACAGAAACGTGGAAGCATCTCCCATT
GCGTTGATTAGATCTGCTAGTATGATGCTCAAGTACGCTCTCGAAGAACC
TGCTGCTGCAGATATTATTCAGCAGGCGTTGAGGAAGAGTATGGAAGAGA
TCATTGGATCACCTTCTTCGAACGGAAATGGTTCTTCAGCGATGGGACCT
TCAGAATCCACTGATATTGTGACCAGGAGCATGCAGTTGATGAGACAATA
CGAACAGGTTTGCGATCCAACTGAATGTGGAGAATAG

Coding sequence (CDS) from alignment at NODE_966_length_15672_cov_4.486041:367..1503+

>Gcaud1069.t1 ID=Gcaud1069.t1|Name=Gcaud1069.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1137bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:367..1503+ (Gracilaria caudata M_176_S67 male)
ATGGGCCCCGTCAAGGGCTCCTCGCAGAATCCTTACAAGATCGCCGTGTT
GGAAGGTGATGGTGCCGGCCCTTCCGTTGCTGCTTCTGCCGTGCGTGTGT
TGGAGGAGCTGACCAACTATGCCGAGATCCACTTCGATTTCAAGTATGCC
GATTATGGTGCCCCTGCGTACGAGAAGAGTGGCAAGCTAGTCACGCCGGA
TACGCTGCAGGTTTGTCGTGAGTCTGATGCTGTTTTGCGTAGTTATCAGG
GTTTCAAAAGAGGCGTTGGAAAGGATGGTAGCGCTCATCTGCAGCTGAGA
GATGAACTTGGTTTGTTTGCTCAGTTTCGACCTGTCATTATTTATCCGGC
TTTGGCATCGCAAAGCACTCTTAGGAAAGAGGTTGTTGAGGCAGTCGATA
TAATGCTGGTCCGAGAAATTTCAGCCGGTGCGCTCGGAGCGGAAAGTATC
ACAAAGGATGAGAGCGATGTGAGTGAGATAAGATACTCTAAGGACCAAAT
CAACGCAATCGCAAACGCAGCTCTTCAGGTGGCTGTGCAGCGAAACGGAA
ACATTCTCAATGTTGACAAGGCTGATGCATTGTCAATCTCAAGGTTTTGG
AGAAGAAACGTGCACGAAACCATCGAACGTGAGGCAAAGGGCAATGATGG
TATATTGCTCACCGATATGTTCGTCGATGATTTTGTGAGAGAGGTCATCC
TGCGTCCCGGGGATTTTGATGTTGTTGTCACAAGTAATCTTTTCGGTGAT
ATTCTTGCCGAAGTCATTGCAGCTTTGGCCGGGCCCTCTCGATATTCTCC
AAGTTTCTGGGTCAATCGTGAGGGACTGGGTGTGTACGGCCCAGCCGATA
TTTACAATGCTTCTGCGTATCCGGACAGAAACGTGGAAGCATCTCCCATT
GCGTTGATTAGATCTGCTAGTATGATGCTCAAGTACGCTCTCGAAGAACC
TGCTGCTGCAGATATTATTCAGCAGGCGTTGAGGAAGAGTATGGAAGAGA
TCATTGGATCACCTTCTTCGAACGGAAATGGTTCTTCAGCGATGGGACCT
TCAGAATCCACTGATATTGTGACCAGGAGCATGCAGTTGATGAGACAATA
CGAACAGGTTTGCGATCCAACTGAATGTGGAGAATAG