Gcaud1065.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1065.t1
Unique Name	Gcaud1065.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_719_length_19161_cov_4.115994	contig	NODE_719_length_19161_cov_4.115994:12119..12970 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703145.1
PFAMs	IPK
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002
KEGG ko	ko:K07756
KEGG Reaction	R09087,R10548
KEGG Pathway	ko04070,ko04138,map04070,map04138
Evalue	8.65e-48
EggNOG OGs	KOG1620@1\|root,KOG1620@2759\|Eukaryota
EC	2.7.4.21
Description	inositol phosphate biosynthetic process
COG category	G
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1065	Gcaud1065	Gracilaria caudata M_176_S67 male	gene	NODE_719_length_19161_cov_4.115994 12119..12970 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1065.t1.stop1	Gcaud1065.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_719_length_19161_cov_4.115994 12119..12121 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1065.t1.CDS1	Gcaud1065.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_719_length_19161_cov_4.115994 12119..12970 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1065.t1.exon1	Gcaud1065.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_719_length_19161_cov_4.115994 12119..12970 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1065.t1.start1	Gcaud1065.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_719_length_19161_cov_4.115994 12968..12970 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1065.t1	Gcaud1065.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_719_length_19161_cov_4.115994 12119..12970 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_719_length_19161_cov_4.115994:12119..12970-
coding sequence from alignment at NODE_719_length_19161_cov_4.115994:12119..12970-

mRNA sequence

>Gcaud1065.t1 ID=Gcaud1065.t1|Name=Gcaud1065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=284bp
MQPQQPPGSSYSIQVAGHQLIRQAQPGSILKPWSEKEEAFYRTIHSDRFP
SDLHWLRDATPMYYGVQHTQSPSEKWIELEDLNSHFVKPCVMDVKIGFRH
YDDDASDDKRRKQIASAIATTTSTCAVRFVGTRSFKRTSDAGSDDGQFVV
HDKWHGRELKPNDLLHEISWFFHDAFTFDTRSAQLVLERLQHICHNFSLQ
RRFYLYSSSLLVIYEGAKSSAHYPRVDVRMIDFSHTVHSSGFRDTGYLKG
LQNMVRLVSQAVDAEKVQSVTPSSSASTMEKES*

spliced messenger RNA

>Gcaud1065.t1 ID=Gcaud1065.t1|Name=Gcaud1065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=852bp|location=Sequence derived from alignment at NODE_719_length_19161_cov_4.115994:12119..12970- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCTCAACAGCCCCCCGGCTCCAGCTACTCCATACAGGTTGCAGG
CCATCAGCTCATCAGGCAGGCGCAACCCGGCTCCATTCTCAAGCCGTGGT
CCGAGAAGGAGGAGGCCTTTTATCGCACCATTCATAGCGACCGATTTCCG
TCTGATCTGCATTGGCTACGCGATGCAACGCCTATGTATTATGGCGTGCA
ACACACACAGTCACCTTCGGAAAAGTGGATTGAACTGGAGGATCTTAACT
CCCACTTTGTCAAACCGTGTGTCATGGACGTCAAGATAGGTTTCCGACAC
TATGATGATGATGCGTCTGATGACAAACGAAGGAAGCAAATTGCGTCCGC
CATCGCCACCACCACATCTACCTGTGCCGTTCGTTTTGTTGGCACACGTT
CTTTCAAACGCACCTCAGATGCCGGTTCTGATGACGGTCAATTCGTTGTA
CACGATAAGTGGCATGGAAGAGAACTCAAGCCCAACGATTTGTTACACGA
GATCAGCTGGTTCTTTCACGATGCTTTCACCTTCGACACACGTAGCGCCC
AACTTGTGTTAGAACGCTTGCAGCATATCTGCCACAACTTTTCTCTTCAA
AGACGCTTTTACTTGTATTCCTCTTCGTTGTTGGTAATTTATGAGGGCGC
CAAATCCAGTGCTCACTATCCTCGCGTCGACGTAAGAATGATAGACTTTT
CCCACACTGTCCATTCCTCCGGATTTCGCGACACCGGATATTTGAAAGGT
CTGCAGAATATGGTCCGTCTTGTTTCGCAAGCAGTCGATGCCGAGAAAGT
CCAATCTGTTACACCCAGTTCCAGCGCAAGCACCATGGAGAAGGAGAGCT
GA

protein sequence of Gcaud1065.t1

>Gcaud1065.t1 ID=Gcaud1065.t1|Name=Gcaud1065.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=284bp
MQPQQPPGSSYSIQVAGHQLIRQAQPGSILKPWSEKEEAFYRTIHSDRFP
SDLHWLRDATPMYYGVQHTQSPSEKWIELEDLNSHFVKPCVMDVKIGFRH
YDDDASDDKRRKQIASAIATTTSTCAVRFVGTRSFKRTSDAGSDDGQFVV
HDKWHGRELKPNDLLHEISWFFHDAFTFDTRSAQLVLERLQHICHNFSLQ
RRFYLYSSSLLVIYEGAKSSAHYPRVDVRMIDFSHTVHSSGFRDTGYLKG
LQNMVRLVSQAVDAEKVQSVTPSSSASTMEKES*

mRNA from alignment at NODE_719_length_19161_cov_4.115994:12119..12970-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1065.t1 ID=Gcaud1065.t1|Name=Gcaud1065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=852bp|location=Sequence derived from alignment at NODE_719_length_19161_cov_4.115994:12119..12970- (Gracilaria caudata M_176_S67 male)
ATGCAGCCTCAACAGCCCCCCGGCTCCAGCTACTCCATACAGGTTGCAGG
CCATCAGCTCATCAGGCAGGCGCAACCCGGCTCCATTCTCAAGCCGTGGT
CCGAGAAGGAGGAGGCCTTTTATCGCACCATTCATAGCGACCGATTTCCG
TCTGATCTGCATTGGCTACGCGATGCAACGCCTATGTATTATGGCGTGCA
ACACACACAGTCACCTTCGGAAAAGTGGATTGAACTGGAGGATCTTAACT
CCCACTTTGTCAAACCGTGTGTCATGGACGTCAAGATAGGTTTCCGACAC
TATGATGATGATGCGTCTGATGACAAACGAAGGAAGCAAATTGCGTCCGC
CATCGCCACCACCACATCTACCTGTGCCGTTCGTTTTGTTGGCACACGTT
CTTTCAAACGCACCTCAGATGCCGGTTCTGATGACGGTCAATTCGTTGTA
CACGATAAGTGGCATGGAAGAGAACTCAAGCCCAACGATTTGTTACACGA
GATCAGCTGGTTCTTTCACGATGCTTTCACCTTCGACACACGTAGCGCCC
AACTTGTGTTAGAACGCTTGCAGCATATCTGCCACAACTTTTCTCTTCAA
AGACGCTTTTACTTGTATTCCTCTTCGTTGTTGGTAATTTATGAGGGCGC
CAAATCCAGTGCTCACTATCCTCGCGTCGACGTAAGAATGATAGACTTTT
CCCACACTGTCCATTCCTCCGGATTTCGCGACACCGGATATTTGAAAGGT
CTGCAGAATATGGTCCGTCTTGTTTCGCAAGCAGTCGATGCCGAGAAAGT
CCAATCTGTTACACCCAGTTCCAGCGCAAGCACCATGGAGAAGGAGAGCT
GA

Coding sequence (CDS) from alignment at NODE_719_length_19161_cov_4.115994:12119..12970-

>Gcaud1065.t1 ID=Gcaud1065.t1|Name=Gcaud1065.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=852bp|location=Sequence derived from alignment at NODE_719_length_19161_cov_4.115994:12119..12970- (Gracilaria caudata M_176_S67 male)
ATGCAGCCTCAACAGCCCCCCGGCTCCAGCTACTCCATACAGGTTGCAGG
CCATCAGCTCATCAGGCAGGCGCAACCCGGCTCCATTCTCAAGCCGTGGT
CCGAGAAGGAGGAGGCCTTTTATCGCACCATTCATAGCGACCGATTTCCG
TCTGATCTGCATTGGCTACGCGATGCAACGCCTATGTATTATGGCGTGCA
ACACACACAGTCACCTTCGGAAAAGTGGATTGAACTGGAGGATCTTAACT
CCCACTTTGTCAAACCGTGTGTCATGGACGTCAAGATAGGTTTCCGACAC
TATGATGATGATGCGTCTGATGACAAACGAAGGAAGCAAATTGCGTCCGC
CATCGCCACCACCACATCTACCTGTGCCGTTCGTTTTGTTGGCACACGTT
CTTTCAAACGCACCTCAGATGCCGGTTCTGATGACGGTCAATTCGTTGTA
CACGATAAGTGGCATGGAAGAGAACTCAAGCCCAACGATTTGTTACACGA
GATCAGCTGGTTCTTTCACGATGCTTTCACCTTCGACACACGTAGCGCCC
AACTTGTGTTAGAACGCTTGCAGCATATCTGCCACAACTTTTCTCTTCAA
AGACGCTTTTACTTGTATTCCTCTTCGTTGTTGGTAATTTATGAGGGCGC
CAAATCCAGTGCTCACTATCCTCGCGTCGACGTAAGAATGATAGACTTTT
CCCACACTGTCCATTCCTCCGGATTTCGCGACACCGGATATTTGAAAGGT
CTGCAGAATATGGTCCGTCTTGTTTCGCAAGCAGTCGATGCCGAGAAAGT
CCAATCTGTTACACCCAGTTCCAGCGCAAGCACCATGGAGAAGGAGAGCT
GA