Gcaud1056.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1056.t1
Unique NameGcaud1056.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_735_length_18938_cov_4.282485contigNODE_735_length_18938_cov_4.282485:2296..2892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000011319
Preferred namePPCDC
PFAMsFlavoprotein
Max annot lvl33208|Metazoa
KEGG rclassRC00822
KEGG koko:K01598
KEGG ReactionR03269
KEGG Pathwayko00770,ko01100,map00770,map01100
KEGG ModuleM00120
GOsGO:0003674,GO:0003824,GO:0004633,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue4.65e-58
EggNOG OGsCOG0452@1|root,KOG0672@2759|Eukaryota,38DMT@33154|Opisthokonta,3BHHS@33208|Metazoa,3CZ5J@33213|Bilateria,481T6@7711|Chordata,492TS@7742|Vertebrata,4GQKK@8782|Aves
EC4.1.1.36
DescriptionPhosphopantothenoylcysteine decarboxylase
COG categoryDP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1056Gcaud1056Gracilaria caudata M_176_S67 malegeneNODE_735_length_18938_cov_4.282485 2296..2892 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1056.t1.stop1Gcaud1056.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_735_length_18938_cov_4.282485 2296..2298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1056.t1.CDS1Gcaud1056.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_735_length_18938_cov_4.282485 2296..2892 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1056.t1.exon1Gcaud1056.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_735_length_18938_cov_4.282485 2296..2892 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1056.t1.start1Gcaud1056.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_735_length_18938_cov_4.282485 2890..2892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1056.t1Gcaud1056.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_735_length_18938_cov_4.282485 2296..2892 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1056.t1 ID=Gcaud1056.t1|Name=Gcaud1056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=199bp
MQSESSQAADRLSGKNILLGVSGSVAGIRVPLLVDLLLSKGATVKVVSTA
NGSTFIEAERPLTPDVTWLKDEHEWRMWRKLSDPVLHIELRKWAHILVIA
PLSANTLAKIANGICDNLLTCVARAWPLTGPQAKPFFVAPAMNNCMWDHP
ITSLQLERIRTFGVRVIEPIQKKLACGDTGKGAMEEPRAIVAVLTSIS*
back to top

spliced messenger RNA

>Gcaud1056.t1 ID=Gcaud1056.t1|Name=Gcaud1056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_735_length_18938_cov_4.282485:2296..2892- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCAGAGTCGTCACAGGCTGCAGACAGGTTGTCGGGAAAGAATAT
CTTGCTTGGAGTTAGTGGTTCGGTTGCTGGCATTCGCGTACCGCTGCTTG
TTGATCTACTACTTTCGAAGGGGGCTACCGTGAAAGTCGTTAGTACTGCC
AATGGCTCAACGTTCATTGAAGCAGAACGCCCTCTGACACCCGATGTAAC
CTGGCTTAAAGACGAGCACGAATGGCGCATGTGGCGGAAGCTTTCGGATC
CTGTACTGCACATAGAGCTACGAAAGTGGGCACACATTCTTGTCATCGCC
CCACTTTCTGCGAACACTTTGGCCAAGATAGCGAACGGTATTTGTGACAA
TCTCCTCACATGCGTAGCGAGAGCATGGCCTTTGACAGGGCCGCAGGCAA
AGCCATTCTTTGTGGCTCCGGCCATGAATAATTGCATGTGGGACCATCCG
ATTACATCGTTACAGCTAGAGAGAATACGTACTTTCGGTGTGCGCGTTAT
TGAACCGATTCAAAAAAAACTGGCCTGCGGTGATACAGGAAAAGGAGCAA
TGGAAGAGCCAAGAGCAATCGTTGCAGTCCTTACCAGTATTTCGTGA
back to top

protein sequence of Gcaud1056.t1

>Gcaud1056.t1 ID=Gcaud1056.t1|Name=Gcaud1056.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MQSESSQAADRLSGKNILLGVSGSVAGIRVPLLVDLLLSKGATVKVVSTA
NGSTFIEAERPLTPDVTWLKDEHEWRMWRKLSDPVLHIELRKWAHILVIA
PLSANTLAKIANGICDNLLTCVARAWPLTGPQAKPFFVAPAMNNCMWDHP
ITSLQLERIRTFGVRVIEPIQKKLACGDTGKGAMEEPRAIVAVLTSIS*
back to top

mRNA from alignment at NODE_735_length_18938_cov_4.282485:2296..2892-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1056.t1 ID=Gcaud1056.t1|Name=Gcaud1056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_735_length_18938_cov_4.282485:2296..2892- (Gracilaria caudata M_176_S67 male)
ATGCAGTCAGAGTCGTCACAGGCTGCAGACAGGTTGTCGGGAAAGAATAT
CTTGCTTGGAGTTAGTGGTTCGGTTGCTGGCATTCGCGTACCGCTGCTTG
TTGATCTACTACTTTCGAAGGGGGCTACCGTGAAAGTCGTTAGTACTGCC
AATGGCTCAACGTTCATTGAAGCAGAACGCCCTCTGACACCCGATGTAAC
CTGGCTTAAAGACGAGCACGAATGGCGCATGTGGCGGAAGCTTTCGGATC
CTGTACTGCACATAGAGCTACGAAAGTGGGCACACATTCTTGTCATCGCC
CCACTTTCTGCGAACACTTTGGCCAAGATAGCGAACGGTATTTGTGACAA
TCTCCTCACATGCGTAGCGAGAGCATGGCCTTTGACAGGGCCGCAGGCAA
AGCCATTCTTTGTGGCTCCGGCCATGAATAATTGCATGTGGGACCATCCG
ATTACATCGTTACAGCTAGAGAGAATACGTACTTTCGGTGTGCGCGTTAT
TGAACCGATTCAAAAAAAACTGGCCTGCGGTGATACAGGAAAAGGAGCAA
TGGAAGAGCCAAGAGCAATCGTTGCAGTCCTTACCAGTATTTCGTGA
back to top

Coding sequence (CDS) from alignment at NODE_735_length_18938_cov_4.282485:2296..2892-

>Gcaud1056.t1 ID=Gcaud1056.t1|Name=Gcaud1056.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=597bp|location=Sequence derived from alignment at NODE_735_length_18938_cov_4.282485:2296..2892- (Gracilaria caudata M_176_S67 male)
ATGCAGTCAGAGTCGTCACAGGCTGCAGACAGGTTGTCGGGAAAGAATAT
CTTGCTTGGAGTTAGTGGTTCGGTTGCTGGCATTCGCGTACCGCTGCTTG
TTGATCTACTACTTTCGAAGGGGGCTACCGTGAAAGTCGTTAGTACTGCC
AATGGCTCAACGTTCATTGAAGCAGAACGCCCTCTGACACCCGATGTAAC
CTGGCTTAAAGACGAGCACGAATGGCGCATGTGGCGGAAGCTTTCGGATC
CTGTACTGCACATAGAGCTACGAAAGTGGGCACACATTCTTGTCATCGCC
CCACTTTCTGCGAACACTTTGGCCAAGATAGCGAACGGTATTTGTGACAA
TCTCCTCACATGCGTAGCGAGAGCATGGCCTTTGACAGGGCCGCAGGCAA
AGCCATTCTTTGTGGCTCCGGCCATGAATAATTGCATGTGGGACCATCCG
ATTACATCGTTACAGCTAGAGAGAATACGTACTTTCGGTGTGCGCGTTAT
TGAACCGATTCAAAAAAAACTGGCCTGCGGTGATACAGGAAAAGGAGCAA
TGGAAGAGCCAAGAGCAATCGTTGCAGTCCTTACCAGTATTTCGTGA
back to top