Gcaud1052.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1052.t1
Unique NameGcaud1052.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6968_length_1033_cov_5.712314contigNODE_6968_length_1033_cov_5.712314:306..1013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1052Gcaud1052Gracilaria caudata M_176_S67 malegeneNODE_6968_length_1033_cov_5.712314 306..1013 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1052.t1.stop1Gcaud1052.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_6968_length_1033_cov_5.712314 306..308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1052.t1.CDS1Gcaud1052.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6968_length_1033_cov_5.712314 306..1013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1052.t1.exon1Gcaud1052.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6968_length_1033_cov_5.712314 306..1013 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1052.t1.start1Gcaud1052.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6968_length_1033_cov_5.712314 1011..1013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1052.t1Gcaud1052.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6968_length_1033_cov_5.712314 306..1013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1052.t1 ID=Gcaud1052.t1|Name=Gcaud1052.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
LVPEAEVATFKEKYINANKLKWGTPEADERCKDNARPEQFERWRWALDNF
DTYVNMLRVYGHSDDKIARMLKGVPMCLPSEQAYDELRAALKTLAGEIGD
EMGWKNVGFVFTGSSVPGFSQNPLKGFRGLPSKITDPKKSDVDICIVADG
INVTVARCHSDGDQFIEPKYAFPTTVNEITSGMRFGCKDLAEFCKTAAAF
YDEWSVKLPGGLQFTFCEDDTDIPPWEARINIRDL*
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spliced messenger RNA

>Gcaud1052.t1 ID=Gcaud1052.t1|Name=Gcaud1052.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_6968_length_1033_cov_5.712314:306..1013- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGTGCCCGAGGCAGAGGTGGCTACCTTCAAGGAGAAGTACATCAACGC
CAACAAACTCAAGTGGGGCACGCCCGAGGCCGACGAGCGCTGCAAGGATA
ACGCACGCCCGGAGCAGTTCGAGCGGTGGAGATGGGCGCTGGATAACTTC
GATACGTACGTCAACATGCTCCGCGTATACGGCCATTCAGACGACAAGAT
TGCGCGCATGCTCAAGGGCGTTCCGATGTGCCTGCCGTCCGAACAAGCAT
ACGATGAGCTGCGTGCCGCGCTCAAGACGCTAGCGGGCGAAATAGGTGAC
GAGATGGGGTGGAAGAATGTGGGGTTTGTGTTCACGGGCAGTTCGGTACC
GGGCTTCAGTCAGAACCCGCTCAAGGGATTCCGCGGGCTGCCCAGTAAGA
TCACAGACCCGAAGAAGTCGGACGTGGACATCTGCATCGTGGCGGACGGC
ATCAACGTGACGGTGGCGCGCTGCCACAGTGACGGCGACCAGTTTATCGA
GCCCAAGTACGCGTTTCCCACCACGGTGAACGAAATCACCAGTGGCATGC
GCTTTGGATGCAAGGATTTGGCCGAATTCTGCAAGACAGCGGCGGCGTTC
TACGACGAGTGGTCGGTGAAACTGCCCGGCGGGTTGCAGTTCACGTTCTG
CGAGGACGACACGGACATCCCGCCGTGGGAGGCGCGCATCAACATTCGCG
ACCTGTGA
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protein sequence of Gcaud1052.t1

>Gcaud1052.t1 ID=Gcaud1052.t1|Name=Gcaud1052.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
LVPEAEVATFKEKYINANKLKWGTPEADERCKDNARPEQFERWRWALDNF
DTYVNMLRVYGHSDDKIARMLKGVPMCLPSEQAYDELRAALKTLAGEIGD
EMGWKNVGFVFTGSSVPGFSQNPLKGFRGLPSKITDPKKSDVDICIVADG
INVTVARCHSDGDQFIEPKYAFPTTVNEITSGMRFGCKDLAEFCKTAAAF
YDEWSVKLPGGLQFTFCEDDTDIPPWEARINIRDL*
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mRNA from alignment at NODE_6968_length_1033_cov_5.712314:306..1013-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1052.t1 ID=Gcaud1052.t1|Name=Gcaud1052.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_6968_length_1033_cov_5.712314:306..1013- (Gracilaria caudata M_176_S67 male)
CTGGTGCCCGAGGCAGAGGTGGCTACCTTCAAGGAGAAGTACATCAACGC
CAACAAACTCAAGTGGGGCACGCCCGAGGCCGACGAGCGCTGCAAGGATA
ACGCACGCCCGGAGCAGTTCGAGCGGTGGAGATGGGCGCTGGATAACTTC
GATACGTACGTCAACATGCTCCGCGTATACGGCCATTCAGACGACAAGAT
TGCGCGCATGCTCAAGGGCGTTCCGATGTGCCTGCCGTCCGAACAAGCAT
ACGATGAGCTGCGTGCCGCGCTCAAGACGCTAGCGGGCGAAATAGGTGAC
GAGATGGGGTGGAAGAATGTGGGGTTTGTGTTCACGGGCAGTTCGGTACC
GGGCTTCAGTCAGAACCCGCTCAAGGGATTCCGCGGGCTGCCCAGTAAGA
TCACAGACCCGAAGAAGTCGGACGTGGACATCTGCATCGTGGCGGACGGC
ATCAACGTGACGGTGGCGCGCTGCCACAGTGACGGCGACCAGTTTATCGA
GCCCAAGTACGCGTTTCCCACCACGGTGAACGAAATCACCAGTGGCATGC
GCTTTGGATGCAAGGATTTGGCCGAATTCTGCAAGACAGCGGCGGCGTTC
TACGACGAGTGGTCGGTGAAACTGCCCGGCGGGTTGCAGTTCACGTTCTG
CGAGGACGACACGGACATCCCGCCGTGGGAGGCGCGCATCAACATTCGCG
ACCTGTGA
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Coding sequence (CDS) from alignment at NODE_6968_length_1033_cov_5.712314:306..1013-

>Gcaud1052.t1 ID=Gcaud1052.t1|Name=Gcaud1052.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_6968_length_1033_cov_5.712314:306..1013- (Gracilaria caudata M_176_S67 male)
CTGGTGCCCGAGGCAGAGGTGGCTACCTTCAAGGAGAAGTACATCAACGC
CAACAAACTCAAGTGGGGCACGCCCGAGGCCGACGAGCGCTGCAAGGATA
ACGCACGCCCGGAGCAGTTCGAGCGGTGGAGATGGGCGCTGGATAACTTC
GATACGTACGTCAACATGCTCCGCGTATACGGCCATTCAGACGACAAGAT
TGCGCGCATGCTCAAGGGCGTTCCGATGTGCCTGCCGTCCGAACAAGCAT
ACGATGAGCTGCGTGCCGCGCTCAAGACGCTAGCGGGCGAAATAGGTGAC
GAGATGGGGTGGAAGAATGTGGGGTTTGTGTTCACGGGCAGTTCGGTACC
GGGCTTCAGTCAGAACCCGCTCAAGGGATTCCGCGGGCTGCCCAGTAAGA
TCACAGACCCGAAGAAGTCGGACGTGGACATCTGCATCGTGGCGGACGGC
ATCAACGTGACGGTGGCGCGCTGCCACAGTGACGGCGACCAGTTTATCGA
GCCCAAGTACGCGTTTCCCACCACGGTGAACGAAATCACCAGTGGCATGC
GCTTTGGATGCAAGGATTTGGCCGAATTCTGCAAGACAGCGGCGGCGTTC
TACGACGAGTGGTCGGTGAAACTGCCCGGCGGGTTGCAGTTCACGTTCTG
CGAGGACGACACGGACATCCCGCCGTGGGAGGCGCGCATCAACATTCGCG
ACCTGTGA
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