Gcaud1040.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1040.t1
Unique Name	Gcaud1040.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	167

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3556_length_3271_cov_5.200000	contig	NODE_3556_length_3271_cov_5.200000:800..1300 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008797599.1
PFAMs	E3_UbLigase_R4,ZZ
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10691
KEGG Pathway	ko05165,ko05203,map05165,map05203
GOs	GO:0000003,GO:0000902,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005911,GO:0006810,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009506,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009826,GO:0009914,GO:0009926,GO:0009987,GO:0010015,GO:0010016,GO:0010033,GO:0010101,GO:0010102,GO:0010229,GO:0010311,GO:0010817,GO:0016020,GO:0016043,GO:0016049,GO:0022414,GO:0022622,GO:0030054,GO:0032501,GO:0032502,GO:0032989,GO:0040007,GO:0042221,GO:0043207,GO:0044424,GO:0044444,GO:0044464,GO:0048281,GO:0048364,GO:0048367,GO:0048527,GO:0048528,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055044,GO:0060560,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0071840,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1905392,GO:1905393
Evalue	5.21e-07
EggNOG OGs	KOG1776@1\|root,KOG1776@2759\|Eukaryota,37NYR@33090\|Viridiplantae,3G7MS@35493\|Streptophyta,3KUH3@4447\|Liliopsida
EC	2.3.2.27
Description	E3 ubiquitin-protein ligase UBR4
COG category	T
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1040	Gcaud1040	Gracilaria caudata M_176_S67 male	gene	NODE_3556_length_3271_cov_5.200000 800..1300 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1040.t1.start1	Gcaud1040.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3556_length_3271_cov_5.200000 800..802 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1040.t1.CDS1	Gcaud1040.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3556_length_3271_cov_5.200000 800..1300 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1040.t1.exon1	Gcaud1040.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3556_length_3271_cov_5.200000 800..1300 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1040.t1.stop1	Gcaud1040.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3556_length_3271_cov_5.200000 1298..1300 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1040.t1	Gcaud1040.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3556_length_3271_cov_5.200000 800..1300 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3556_length_3271_cov_5.200000:800..1300+
coding sequence from alignment at NODE_3556_length_3271_cov_5.200000:800..1300+

mRNA sequence

>Gcaud1040.t1 ID=Gcaud1040.t1|Name=Gcaud1040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=167bp
MSTRYGGSSIPAAVGFFEKCRLVSDSVRIERVGVDVKAIVDHDRMSVILA
GSGNDCIVSPVENQSFRLTAVVENQALVLVGTRVRFGGTDRSRQRVPAAV
KVFNRSLRWNARNGLKRWLDIPFSIPESTKSPHKVSFGLFPRRLNQEGRL
KVDVGYVLLMPLNSMP*

spliced messenger RNA

>Gcaud1040.t1 ID=Gcaud1040.t1|Name=Gcaud1040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp|location=Sequence derived from alignment at NODE_3556_length_3271_cov_5.200000:800..1300+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCCGATACGGTGGAAGTTCCATTCCCGCCGCTGTTGGATTTTT
CGAGAAGTGTCGTCTTGTGTCGGATTCCGTTAGAATTGAAAGAGTGGGTG
TAGATGTAAAGGCTATTGTCGATCACGACAGAATGAGCGTTATTCTAGCG
GGCAGCGGCAACGATTGCATCGTGAGTCCTGTTGAGAATCAATCTTTTCG
TCTTACCGCTGTGGTTGAAAATCAAGCACTCGTTCTTGTTGGAACGCGAG
TGCGCTTTGGAGGAACTGACCGATCTCGCCAAAGAGTACCGGCAGCGGTG
AAGGTCTTCAACAGGTCTCTAAGATGGAACGCACGGAATGGACTGAAAAG
ATGGCTTGATATTCCGTTTTCTATTCCAGAAAGTACTAAATCTCCTCACA
AAGTTAGTTTTGGGCTTTTCCCGAGACGACTGAATCAAGAGGGAAGATTA
AAAGTGGATGTGGGTTACGTGCTATTGATGCCTTTGAACTCTATGCCGTA
A

protein sequence of Gcaud1040.t1

>Gcaud1040.t1 ID=Gcaud1040.t1|Name=Gcaud1040.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=167bp
MSTRYGGSSIPAAVGFFEKCRLVSDSVRIERVGVDVKAIVDHDRMSVILA
GSGNDCIVSPVENQSFRLTAVVENQALVLVGTRVRFGGTDRSRQRVPAAV
KVFNRSLRWNARNGLKRWLDIPFSIPESTKSPHKVSFGLFPRRLNQEGRL
KVDVGYVLLMPLNSMP*

mRNA from alignment at NODE_3556_length_3271_cov_5.200000:800..1300+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1040.t1 ID=Gcaud1040.t1|Name=Gcaud1040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp|location=Sequence derived from alignment at NODE_3556_length_3271_cov_5.200000:800..1300+ (Gracilaria caudata M_176_S67 male)
ATGAGCACCCGATACGGTGGAAGTTCCATTCCCGCCGCTGTTGGATTTTT
CGAGAAGTGTCGTCTTGTGTCGGATTCCGTTAGAATTGAAAGAGTGGGTG
TAGATGTAAAGGCTATTGTCGATCACGACAGAATGAGCGTTATTCTAGCG
GGCAGCGGCAACGATTGCATCGTGAGTCCTGTTGAGAATCAATCTTTTCG
TCTTACCGCTGTGGTTGAAAATCAAGCACTCGTTCTTGTTGGAACGCGAG
TGCGCTTTGGAGGAACTGACCGATCTCGCCAAAGAGTACCGGCAGCGGTG
AAGGTCTTCAACAGGTCTCTAAGATGGAACGCACGGAATGGACTGAAAAG
ATGGCTTGATATTCCGTTTTCTATTCCAGAAAGTACTAAATCTCCTCACA
AAGTTAGTTTTGGGCTTTTCCCGAGACGACTGAATCAAGAGGGAAGATTA
AAAGTGGATGTGGGTTACGTGCTATTGATGCCTTTGAACTCTATGCCGTA
A

Coding sequence (CDS) from alignment at NODE_3556_length_3271_cov_5.200000:800..1300+

>Gcaud1040.t1 ID=Gcaud1040.t1|Name=Gcaud1040.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=501bp|location=Sequence derived from alignment at NODE_3556_length_3271_cov_5.200000:800..1300+ (Gracilaria caudata M_176_S67 male)
ATGAGCACCCGATACGGTGGAAGTTCCATTCCCGCCGCTGTTGGATTTTT
CGAGAAGTGTCGTCTTGTGTCGGATTCCGTTAGAATTGAAAGAGTGGGTG
TAGATGTAAAGGCTATTGTCGATCACGACAGAATGAGCGTTATTCTAGCG
GGCAGCGGCAACGATTGCATCGTGAGTCCTGTTGAGAATCAATCTTTTCG
TCTTACCGCTGTGGTTGAAAATCAAGCACTCGTTCTTGTTGGAACGCGAG
TGCGCTTTGGAGGAACTGACCGATCTCGCCAAAGAGTACCGGCAGCGGTG
AAGGTCTTCAACAGGTCTCTAAGATGGAACGCACGGAATGGACTGAAAAG
ATGGCTTGATATTCCGTTTTCTATTCCAGAAAGTACTAAATCTCCTCACA
AAGTTAGTTTTGGGCTTTTCCCGAGACGACTGAATCAAGAGGGAAGATTA
AAAGTGGATGTGGGTTACGTGCTATTGATGCCTTTGAACTCTATGCCGTA
A