Gcaud1034.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1034.t1
Unique NameGcaud1034.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2665_length_5016_cov_4.722030contigNODE_2665_length_5016_cov_4.722030:2..1049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog290400.Jann_2961
Preferred nameMA20_07595
PFAMs5_nucleotid_C,LysM,Metallophos
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00017
KEGG koko:K01081,ko:K11751
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006213,GO:0006259,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007155,GO:0007159,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009164,GO:0009166,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019362,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0022610,GO:0031974,GO:0031981,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046135,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0051186,GO:0055086,GO:0070013,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0072524,GO:0072527,GO:0072529,GO:0090304,GO:0098609,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658
Evalue1.85e-35
EggNOG OGsCOG0737@1|root,COG0737@2|Bacteria,1MX03@1224|Proteobacteria,2TTUP@28211|Alphaproteobacteria
EC3.1.3.5,3.6.1.45
DescriptionBelongs to the 5'-nucleotidase family
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1034Gcaud1034Gracilaria caudata M_176_S67 malegeneNODE_2665_length_5016_cov_4.722030 2..1049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1034.t1Gcaud1034.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2665_length_5016_cov_4.722030 2..1049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1034.t1.CDS1Gcaud1034.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2665_length_5016_cov_4.722030 2..755 -
Gcaud1034.t1.CDS2Gcaud1034.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2665_length_5016_cov_4.722030 888..1049 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1034.t1.exon1Gcaud1034.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2665_length_5016_cov_4.722030 2..755 -
Gcaud1034.t1.exon2Gcaud1034.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2665_length_5016_cov_4.722030 888..1049 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1034.t1.intron1Gcaud1034.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2665_length_5016_cov_4.722030 756..887 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1034.t1.start1Gcaud1034.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2665_length_5016_cov_4.722030 1047..1049 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1034.t1 ID=Gcaud1034.t1|Name=Gcaud1034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=306bp
MGRQDPCGDWVQGSLLDTVFKQDIAIEAYRWINYDFATFGNHEFDYGNSH
INDIETLDLAAVEENVSIEDEDSFMVKYINQCAQHKNIIAITHQGYNNDI
ETCRNVKEIDVIIGGHSHTNLNGGQYPVKVTRDDGSVCFVTQTYAHGRYV
CVLDLSFDTNGNVIVESHSYIPMDFRVKVDPEVLLKVQLYNYQVANNAGE
VVSTVTDDVIGGQLCRGPETLSEDGSYVNSGCSMGYLECDAIMYIAADHA
SEFPRVCFTNGGSFRNSLSKGKVTLRDIVNVLPFGNTIVSMKLKGSAILD
AIKHGX
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spliced messenger RNA

>Gcaud1034.t1 ID=Gcaud1034.t1|Name=Gcaud1034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=916bp|location=Sequence derived from alignment at NODE_2665_length_5016_cov_4.722030:2..1049- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGTCAAGATCCATGCGGTGATTGGGTTCAAGGCTCACTTTTGGA
CACTGTGTTCAAGCAAGATATCGCCATTGAGGCATACAGGTGGATCAACT
ATGATTTTGCCACGTTTGGGAACCATGAGTTTGACTACGGCAACTCCCAC
ATCAATGACATCGAGACTCTTGACCTTGCAGCGGTTGAGGAGAATGTTTC
CATTGAAGATGAGGACTCGTTCATGGTCAAATACATCAACCAATGCGCAC
AACACAAGAACATCATCGCTATCACGCATCAGGGCTACAACAACGACATT
GAGACCTGTCGCAACGTGAAAGAGATTGATGTCATTATCGGTGGTCATTC
GCACACAAATCTTAATGGAGGGCAGTATCCGGTCAAGGTTACTCGTGATG
ATGGCTCTGTTTGTTTCGTGACGCAGACGTATGCTCATGGTCGCTACGTC
TGTGTGCTCGACCTCAGCTTTGATACGAATGGGAACGTCATTGTTGAGTC
ACACTCATATATCCCAATGGACTTCCGGGTCAAGGTCGACCCCGAAGTTC
TTCTGAAGGTACAATTGTACAACTATCAAGTCGCGAACAATGCCGGTGAG
GTTGTCTCCACCGTCACAGATGATGTAATCGGTGGACAGCTTTGCCGAGG
TCCGGAAACACTTTCAGAGGACGGATCATACGTTAATTCGGGGTGTTCCA
TGGGTTATTTGGAATGTGACGCCATAATGTACATTGCAGCAGATCATGCA
TCCGAGTTTCCTCGAGTTTGTTTTACGAATGGGGGTTCTTTTCGAAATTC
GCTCAGCAAGGGAAAGGTCACACTTCGTGATATTGTGAACGTTCTCCCGT
TTGGTAACACAATCGTATCAATGAAATTGAAAGGGTCCGCCATACTTGAT
GCGATCAAGCACGGTT
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protein sequence of Gcaud1034.t1

>Gcaud1034.t1 ID=Gcaud1034.t1|Name=Gcaud1034.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=306bp
MGRQDPCGDWVQGSLLDTVFKQDIAIEAYRWINYDFATFGNHEFDYGNSH
INDIETLDLAAVEENVSIEDEDSFMVKYINQCAQHKNIIAITHQGYNNDI
ETCRNVKEIDVIIGGHSHTNLNGGQYPVKVTRDDGSVCFVTQTYAHGRYV
CVLDLSFDTNGNVIVESHSYIPMDFRVKVDPEVLLKVQLYNYQVANNAGE
VVSTVTDDVIGGQLCRGPETLSEDGSYVNSGCSMGYLECDAIMYIAADHA
SEFPRVCFTNGGSFRNSLSKGKVTLRDIVNVLPFGNTIVSMKLKGSAILD
AIKHGX
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mRNA from alignment at NODE_2665_length_5016_cov_4.722030:2..1049-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1034.t1 ID=Gcaud1034.t1|Name=Gcaud1034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1048bp|location=Sequence derived from alignment at NODE_2665_length_5016_cov_4.722030:2..1049- (Gracilaria caudata M_176_S67 male)
ATGGGACGTCAAGATCCATGCGGTGATTGGGTTCAAGGCTCACTTTTGGA
CACTGTGTTCAAGCAAGATATCGCCATTGAGGCATACAGGTGGATCAACT
ATGATTTTGCCACGTTTGGGAACCATGAGTTTGACTACGGCAACTCCCAC
ATCAATGACATCGTCCGCCAGATCGCCCCGCAAACCACGTTTCTCGCTTC
AAATGTGTTTTTCTCGGGTCAGGGAATGGATGATCTTCCTCTTTTCCGCT
TTGTTGATCTTCATGGCATCTGATGGGTGTCCGCTCTTACCAAGGAGACT
CTTGACCTTGCAGCGGTTGAGGAGAATGTTTCCATTGAAGATGAGGACTC
GTTCATGGTCAAATACATCAACCAATGCGCACAACACAAGAACATCATCG
CTATCACGCATCAGGGCTACAACAACGACATTGAGACCTGTCGCAACGTG
AAAGAGATTGATGTCATTATCGGTGGTCATTCGCACACAAATCTTAATGG
AGGGCAGTATCCGGTCAAGGTTACTCGTGATGATGGCTCTGTTTGTTTCG
TGACGCAGACGTATGCTCATGGTCGCTACGTCTGTGTGCTCGACCTCAGC
TTTGATACGAATGGGAACGTCATTGTTGAGTCACACTCATATATCCCAAT
GGACTTCCGGGTCAAGGTCGACCCCGAAGTTCTTCTGAAGGTACAATTGT
ACAACTATCAAGTCGCGAACAATGCCGGTGAGGTTGTCTCCACCGTCACA
GATGATGTAATCGGTGGACAGCTTTGCCGAGGTCCGGAAACACTTTCAGA
GGACGGATCATACGTTAATTCGGGGTGTTCCATGGGTTATTTGGAATGTG
ACGCCATAATGTACATTGCAGCAGATCATGCATCCGAGTTTCCTCGAGTT
TGTTTTACGAATGGGGGTTCTTTTCGAAATTCGCTCAGCAAGGGAAAGGT
CACACTTCGTGATATTGTGAACGTTCTCCCGTTTGGTAACACAATCGTAT
CAATGAAATTGAAAGGGTCCGCCATACTTGATGCGATCAAGCACGGTT
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Coding sequence (CDS) from alignment at NODE_2665_length_5016_cov_4.722030:2..1049-

>Gcaud1034.t1 ID=Gcaud1034.t1|Name=Gcaud1034.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=916bp|location=Sequence derived from alignment at NODE_2665_length_5016_cov_4.722030:2..1049- (Gracilaria caudata M_176_S67 male)
ATGGGACGTCAAGATCCATGCGGTGATTGGGTTCAAGGCTCACTTTTGGA
CACTGTGTTCAAGCAAGATATCGCCATTGAGGCATACAGGTGGATCAACT
ATGATTTTGCCACGTTTGGGAACCATGAGTTTGACTACGGCAACTCCCAC
ATCAATGACATCGAGACTCTTGACCTTGCAGCGGTTGAGGAGAATGTTTC
CATTGAAGATGAGGACTCGTTCATGGTCAAATACATCAACCAATGCGCAC
AACACAAGAACATCATCGCTATCACGCATCAGGGCTACAACAACGACATT
GAGACCTGTCGCAACGTGAAAGAGATTGATGTCATTATCGGTGGTCATTC
GCACACAAATCTTAATGGAGGGCAGTATCCGGTCAAGGTTACTCGTGATG
ATGGCTCTGTTTGTTTCGTGACGCAGACGTATGCTCATGGTCGCTACGTC
TGTGTGCTCGACCTCAGCTTTGATACGAATGGGAACGTCATTGTTGAGTC
ACACTCATATATCCCAATGGACTTCCGGGTCAAGGTCGACCCCGAAGTTC
TTCTGAAGGTACAATTGTACAACTATCAAGTCGCGAACAATGCCGGTGAG
GTTGTCTCCACCGTCACAGATGATGTAATCGGTGGACAGCTTTGCCGAGG
TCCGGAAACACTTTCAGAGGACGGATCATACGTTAATTCGGGGTGTTCCA
TGGGTTATTTGGAATGTGACGCCATAATGTACATTGCAGCAGATCATGCA
TCCGAGTTTCCTCGAGTTTGTTTTACGAATGGGGGTTCTTTTCGAAATTC
GCTCAGCAAGGGAAAGGTCACACTTCGTGATATTGTGAACGTTCTCCCGT
TTGGTAACACAATCGTATCAATGAAATTGAAAGGGTCCGCCATACTTGAT
GCGATCAAGCACGGTT
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