Gcaud1026.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1026.t1
Unique NameGcaud1026.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length66
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_896_length_16412_cov_3.936217contigNODE_896_length_16412_cov_3.936217:596..1043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1026Gcaud1026Gracilaria caudata M_176_S67 malegeneNODE_896_length_16412_cov_3.936217 596..1043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1026.t1Gcaud1026.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_896_length_16412_cov_3.936217 596..1043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1026.t1.CDS1Gcaud1026.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_896_length_16412_cov_3.936217 596..639 +
Gcaud1026.t1.CDS2Gcaud1026.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_896_length_16412_cov_3.936217 892..1043 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1026.t1.exon1Gcaud1026.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_896_length_16412_cov_3.936217 596..639 +
Gcaud1026.t1.exon2Gcaud1026.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_896_length_16412_cov_3.936217 892..1043 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1026.t1.intron1Gcaud1026.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_896_length_16412_cov_3.936217 640..891 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1026.t1.stop1Gcaud1026.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_896_length_16412_cov_3.936217 1041..1043 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1026.t1 ID=Gcaud1026.t1|Name=Gcaud1026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=66bp
XLNLFWKVNTNEGYEGTGFEAVSAATSSEKTARSWIQSLYGRSDLTRDNR
GQYEILRVRFEVGYC*
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spliced messenger RNA

>Gcaud1026.t1 ID=Gcaud1026.t1|Name=Gcaud1026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=196bp|location=Sequence derived from alignment at NODE_896_length_16412_cov_3.936217:596..1043+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATTGAACCTTTTCTGGAAGGTAAACACCAACGAGGGATACGAAGGGACTG
GGTTTGAAGCCGTATCTGCAGCTACATCGTCTGAAAAAACTGCACGGTCT
TGGATCCAGTCGCTTTACGGAAGGTCTGATCTCACCCGTGACAATCGCGG
ACAATATGAAATACTGCGTGTCCGTTTTGAAGTTGGTTATTGCTAG
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protein sequence of Gcaud1026.t1

>Gcaud1026.t1 ID=Gcaud1026.t1|Name=Gcaud1026.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=66bp
XLNLFWKVNTNEGYEGTGFEAVSAATSSEKTARSWIQSLYGRSDLTRDNR
GQYEILRVRFEVGYC*
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mRNA from alignment at NODE_896_length_16412_cov_3.936217:596..1043+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1026.t1 ID=Gcaud1026.t1|Name=Gcaud1026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=448bp|location=Sequence derived from alignment at NODE_896_length_16412_cov_3.936217:596..1043+ (Gracilaria caudata M_176_S67 male)
ATTGAACCTTTTCTGGAAGGTAAACACCAACGAGGGATACGAAGGTACGG
CTTGTTTCCGCTCTTCTCTAGCCGTCGCAAAGCGACGGATCTGGCTCGCA
AGCGATTGTCGAACGCTTTGAGATACGTTTGCGACACAGGGGAATCCCGA
TCCTTACCTCTTGTCACAACTGATGTGAACAGCTTCACATTGCACAAAGC
TGGCCTCTTCTTTCTACAGCATTCCACCTTCGTTTTTCGGTGCAGAAAAG
TTTGCTTAACGCTTTTTCTCTAACTTTTCTCACATGAAAATGACAGGGAC
TGGGTTTGAAGCCGTATCTGCAGCTACATCGTCTGAAAAAACTGCACGGT
CTTGGATCCAGTCGCTTTACGGAAGGTCTGATCTCACCCGTGACAATCGC
GGACAATATGAAATACTGCGTGTCCGTTTTGAAGTTGGTTATTGCTAG
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Coding sequence (CDS) from alignment at NODE_896_length_16412_cov_3.936217:596..1043+

>Gcaud1026.t1 ID=Gcaud1026.t1|Name=Gcaud1026.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=196bp|location=Sequence derived from alignment at NODE_896_length_16412_cov_3.936217:596..1043+ (Gracilaria caudata M_176_S67 male)
ATTGAACCTTTTCTGGAAGGTAAACACCAACGAGGGATACGAAGGGACTG
GGTTTGAAGCCGTATCTGCAGCTACATCGTCTGAAAAAACTGCACGGTCT
TGGATCCAGTCGCTTTACGGAAGGTCTGATCTCACCCGTGACAATCGCGG
ACAATATGAAATACTGCGTGTCCGTTTTGAAGTTGGTTATTGCTAG
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