Gcaud10240.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10240.t1
Unique NameGcaud10240.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length63
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4529_length_2198_cov_4.911248contigNODE_4529_length_2198_cov_4.911248:1370..1623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10240Gcaud10240Gracilaria caudata M_176_S67 malegeneNODE_4529_length_2198_cov_4.911248 1370..1623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10240.t1Gcaud10240.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4529_length_2198_cov_4.911248 1370..1623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10240.t1.CDS1Gcaud10240.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4529_length_2198_cov_4.911248 1370..1528 +
Gcaud10240.t1.CDS2Gcaud10240.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_4529_length_2198_cov_4.911248 1595..1623 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10240.t1.exon1Gcaud10240.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4529_length_2198_cov_4.911248 1370..1528 +
Gcaud10240.t1.exon2Gcaud10240.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_4529_length_2198_cov_4.911248 1595..1623 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10240.t1.intron1Gcaud10240.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_4529_length_2198_cov_4.911248 1529..1594 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10240.t1.stop1Gcaud10240.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4529_length_2198_cov_4.911248 1621..1623 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10240.t1 ID=Gcaud10240.t1|Name=Gcaud10240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=63bp
XTFSPKXXXXPFTYCGRENRTPPISLIPGRSLLHVHLDFEDLLISKAYVL
GPAVYHSPYQFG*
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spliced messenger RNA

>Gcaud10240.t1 ID=Gcaud10240.t1|Name=Gcaud10240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=188bp|location=Sequence derived from alignment at NODE_4529_length_2198_cov_4.911248:1370..1623+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ACACGTTTTCTCCGAAGCNNNNNNNNNNGCCTTTCACCTACTGTGGACGC
GAGAACCGTACTCCACCCATATCCCTCATACCTGGAAGAAGTCTTCTCCA
TGTTCACCTCGACTTCGAGGATCTTTTGATTTCAAAAGCATATGTACTTG
GTCCGGCAGTTTATCACTCACCATACCAATTTGGTTGA
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protein sequence of Gcaud10240.t1

>Gcaud10240.t1 ID=Gcaud10240.t1|Name=Gcaud10240.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=63bp
XTFSPKXXXXPFTYCGRENRTPPISLIPGRSLLHVHLDFEDLLISKAYVL
GPAVYHSPYQFG*
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mRNA from alignment at NODE_4529_length_2198_cov_4.911248:1370..1623+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10240.t1 ID=Gcaud10240.t1|Name=Gcaud10240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=254bp|location=Sequence derived from alignment at NODE_4529_length_2198_cov_4.911248:1370..1623+ (Gracilaria caudata M_176_S67 male)
ACACGTTTTCTCCGAAGCNNNNNNNNNNGCCTTTCACCTACTGTGGACGC
GAGAACCGTACTCCACCCATATCCCTCATACCTGGAAGAAGTCTTCTCCA
TGTTCACCTCGACTTCGAGGATCTTTTGATTTCAAAAGCATATGTACTTG
GTCCGGCAGGTACGCTGTCTATAGTGTTCCGTTTGCAACATCTTCGTTCT
TCGATCTGACAATTGTCAGTGATAGTTTATCACTCACCATACCAATTTGG
TTGA
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Coding sequence (CDS) from alignment at NODE_4529_length_2198_cov_4.911248:1370..1623+

>Gcaud10240.t1 ID=Gcaud10240.t1|Name=Gcaud10240.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=188bp|location=Sequence derived from alignment at NODE_4529_length_2198_cov_4.911248:1370..1623+ (Gracilaria caudata M_176_S67 male)
ACACGTTTTCTCCGAAGCNNNNNNNNNNGCCTTTCACCTACTGTGGACGC
GAGAACCGTACTCCACCCATATCCCTCATACCTGGAAGAAGTCTTCTCCA
TGTTCACCTCGACTTCGAGGATCTTTTGATTTCAAAAGCATATGTACTTG
GTCCGGCAGTTTATCACTCACCATACCAATTTGGTTGA
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