Gcaud1023.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1023.t1
Unique NameGcaud1023.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_137_length_44725_cov_4.465632contigNODE_137_length_44725_cov_4.465632:24761..25408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1023Gcaud1023Gracilaria caudata M_176_S67 malegeneNODE_137_length_44725_cov_4.465632 24761..25408 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1023.t1.start1Gcaud1023.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_137_length_44725_cov_4.465632 24761..24763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1023.t1.CDS1Gcaud1023.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_137_length_44725_cov_4.465632 24761..25408 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1023.t1.exon1Gcaud1023.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_137_length_44725_cov_4.465632 24761..25408 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1023.t1.stop1Gcaud1023.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_137_length_44725_cov_4.465632 25406..25408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1023.t1Gcaud1023.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_137_length_44725_cov_4.465632 24761..25408 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1023.t1 ID=Gcaud1023.t1|Name=Gcaud1023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=216bp
MCAYKTTSPALACNADCYHKAVTMVRKVYKLDPILNSDRTTPDREHTSTP
RYSLHTTGAMDNPPRRVSATNALALLPRQAPHLELFEELNRYRMEHGRPQ
LERHRALEEEAQWYNTRFVDGIGHVTLRCRDCPRYEKVVNEFVVERDDDV
VDARDDEDDHTVLGMLGMCAVFKRFLRKIRYQERLLRERRFVSGGAHVLV
SQQHVCICVLLAVAR*
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spliced messenger RNA

>Gcaud1023.t1 ID=Gcaud1023.t1|Name=Gcaud1023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=648bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:24761..25408+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCTATAAAACTACATCGCCTGCGCTCGCTTGCAACGCCGACTG
CTACCACAAGGCAGTCACAATGGTGAGAAAGGTGTACAAATTGGACCCCA
TTCTTAACTCCGACAGAACCACGCCAGATCGTGAACATACATCTACACCC
CGGTATAGTCTCCATACCACGGGTGCTATGGATAACCCGCCGCGAAGAGT
ATCTGCCACCAACGCTTTGGCCTTACTGCCTCGCCAAGCTCCACACCTCG
AGCTTTTCGAGGAATTGAACCGGTACCGCATGGAACATGGCCGCCCCCAG
CTGGAGCGCCACCGTGCGTTGGAGGAGGAGGCGCAGTGGTACAACACTAG
GTTTGTTGATGGCATTGGCCATGTCACCTTGCGCTGTCGTGACTGCCCGC
GGTATGAAAAGGTTGTGAATGAGTTTGTGGTGGAACGCGATGACGATGTC
GTTGATGCACGTGATGACGAAGACGATCACACCGTGTTGGGCATGTTGGG
AATGTGCGCCGTGTTCAAGCGCTTCTTGCGCAAGATCCGCTACCAGGAAC
GGCTTCTTCGTGAGCGGCGTTTCGTGTCTGGCGGCGCGCACGTCCTGGTG
TCGCAGCAGCACGTGTGCATTTGCGTGTTACTCGCGGTCGCAAGGTGA
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protein sequence of Gcaud1023.t1

>Gcaud1023.t1 ID=Gcaud1023.t1|Name=Gcaud1023.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=216bp
MCAYKTTSPALACNADCYHKAVTMVRKVYKLDPILNSDRTTPDREHTSTP
RYSLHTTGAMDNPPRRVSATNALALLPRQAPHLELFEELNRYRMEHGRPQ
LERHRALEEEAQWYNTRFVDGIGHVTLRCRDCPRYEKVVNEFVVERDDDV
VDARDDEDDHTVLGMLGMCAVFKRFLRKIRYQERLLRERRFVSGGAHVLV
SQQHVCICVLLAVAR*
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mRNA from alignment at NODE_137_length_44725_cov_4.465632:24761..25408+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1023.t1 ID=Gcaud1023.t1|Name=Gcaud1023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=648bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:24761..25408+ (Gracilaria caudata M_176_S67 male)
ATGTGCGCCTATAAAACTACATCGCCTGCGCTCGCTTGCAACGCCGACTG
CTACCACAAGGCAGTCACAATGGTGAGAAAGGTGTACAAATTGGACCCCA
TTCTTAACTCCGACAGAACCACGCCAGATCGTGAACATACATCTACACCC
CGGTATAGTCTCCATACCACGGGTGCTATGGATAACCCGCCGCGAAGAGT
ATCTGCCACCAACGCTTTGGCCTTACTGCCTCGCCAAGCTCCACACCTCG
AGCTTTTCGAGGAATTGAACCGGTACCGCATGGAACATGGCCGCCCCCAG
CTGGAGCGCCACCGTGCGTTGGAGGAGGAGGCGCAGTGGTACAACACTAG
GTTTGTTGATGGCATTGGCCATGTCACCTTGCGCTGTCGTGACTGCCCGC
GGTATGAAAAGGTTGTGAATGAGTTTGTGGTGGAACGCGATGACGATGTC
GTTGATGCACGTGATGACGAAGACGATCACACCGTGTTGGGCATGTTGGG
AATGTGCGCCGTGTTCAAGCGCTTCTTGCGCAAGATCCGCTACCAGGAAC
GGCTTCTTCGTGAGCGGCGTTTCGTGTCTGGCGGCGCGCACGTCCTGGTG
TCGCAGCAGCACGTGTGCATTTGCGTGTTACTCGCGGTCGCAAGGTGA
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Coding sequence (CDS) from alignment at NODE_137_length_44725_cov_4.465632:24761..25408+

>Gcaud1023.t1 ID=Gcaud1023.t1|Name=Gcaud1023.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=648bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:24761..25408+ (Gracilaria caudata M_176_S67 male)
ATGTGCGCCTATAAAACTACATCGCCTGCGCTCGCTTGCAACGCCGACTG
CTACCACAAGGCAGTCACAATGGTGAGAAAGGTGTACAAATTGGACCCCA
TTCTTAACTCCGACAGAACCACGCCAGATCGTGAACATACATCTACACCC
CGGTATAGTCTCCATACCACGGGTGCTATGGATAACCCGCCGCGAAGAGT
ATCTGCCACCAACGCTTTGGCCTTACTGCCTCGCCAAGCTCCACACCTCG
AGCTTTTCGAGGAATTGAACCGGTACCGCATGGAACATGGCCGCCCCCAG
CTGGAGCGCCACCGTGCGTTGGAGGAGGAGGCGCAGTGGTACAACACTAG
GTTTGTTGATGGCATTGGCCATGTCACCTTGCGCTGTCGTGACTGCCCGC
GGTATGAAAAGGTTGTGAATGAGTTTGTGGTGGAACGCGATGACGATGTC
GTTGATGCACGTGATGACGAAGACGATCACACCGTGTTGGGCATGTTGGG
AATGTGCGCCGTGTTCAAGCGCTTCTTGCGCAAGATCCGCTACCAGGAAC
GGCTTCTTCGTGAGCGGCGTTTCGTGTCTGGCGGCGCGCACGTCCTGGTG
TCGCAGCAGCACGTGTGCATTTGCGTGTTACTCGCGGTCGCAAGGTGA
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