Gcaud10228.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10228.t1
Unique Name	Gcaud10228.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	605

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1214_length_12569_cov_4.255971	contig	NODE_1214_length_12569_cov_4.255971:1855..3669 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9483.ENSCJAP00000024059
Preferred name	NDOR1
PFAMs	FAD_binding_1,Flavodoxin_1,NAD_binding_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K15014
KEGG TC	2.A.57.1
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0010033,GO:0010181,GO:0016491,GO:0032553,GO:0035690,GO:0036094,GO:0036245,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045111,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071310,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901654,GO:1901655,GO:1901700,GO:1901701
Evalue	7.93e-111
EggNOG OGs	COG0369@1\|root,KOG1159@2759\|Eukaryota,38DM1@33154\|Opisthokonta,3BE84@33208\|Metazoa,3CRQ3@33213\|Bilateria,489XM@7711\|Chordata,48VQ1@7742\|Vertebrata,3JDBG@40674\|Mammalia,35JH4@314146\|Euarchontoglires,4MHXK@9443\|Primates
Description	Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe S cluster of CIAPIN1
COG category	C
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10228	Gcaud10228	Gracilaria caudata M_176_S67 male	gene	NODE_1214_length_12569_cov_4.255971 1855..3669 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10228.t1.stop1	Gcaud10228.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1214_length_12569_cov_4.255971 1855..1857 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10228.t1.CDS1	Gcaud10228.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1214_length_12569_cov_4.255971 1855..3669 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10228.t1.exon1	Gcaud10228.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1214_length_12569_cov_4.255971 1855..3669 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10228.t1.start1	Gcaud10228.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1214_length_12569_cov_4.255971 3667..3669 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10228.t1	Gcaud10228.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1214_length_12569_cov_4.255971 1855..3669 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1214_length_12569_cov_4.255971:1855..3669-
coding sequence from alignment at NODE_1214_length_12569_cov_4.255971:1855..3669-

mRNA sequence

>Gcaud10228.t1 ID=Gcaud10228.t1|Name=Gcaud10228.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=605bp
MTLTPVNCHVLYATATGTAEDVSQQLAQLLVQRGATLKSLSAIDEYPLAN
LPNDAARGDNFIFVVSTCGDGHVPITMRKFWAFIRRSSLPPAILSDLQFA
IFGLGDRAYVKFNAAARKLCTRLIDLGASLITPLALGDDSEQGGYDAQLL
PWTEKLLHILVPNSTSVSVSDAENVPRIEVRHLGRQIEHSTLKWRPGQAR
RKPSVATYPLHDSIVDRVQVLTNPDVLTDDKEVLHVQLDVSNCAAETGLL
TYEPGDIIHVMPRNSESAVDAFLELTGFDGDELINVSVRQSKRQFGGYHF
NIEMPCTLRQLASAQLDLAATPRRRFFNQLAPFATLDMEREKLLHFASME
GTEDLTQYAYREKRTILLVLRDFPSARPPLDCLIDMIPLLRPRAFSIASS
AQAHAGNIQICVSMVKYITPLRFMRTGVCSGFLKTLTKGDCVPIFLEKGT
SLRFNEKRPAVLVGPGTGVAPLRSYLSAGLSHSLPKLLFFGCRLKDGDFL
YEKDFNTFLQDGRLTQLITAFSRSEPSQKTYVQHKMEAHGKQVWELIHQK
GACVYVAGAAGDMPKAVRQAVVDISKTFGKLDEESCELYVRRMEAEGRLQ
MECW*

spliced messenger RNA

>Gcaud10228.t1 ID=Gcaud10228.t1|Name=Gcaud10228.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at NODE_1214_length_12569_cov_4.255971:1855..3669- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTCACCCCCGTTAACTGCCATGTTTTATACGCCACGGCTACTGG
CACTGCCGAAGACGTTTCACAACAACTTGCTCAACTGCTTGTTCAACGTG
GTGCAACACTGAAATCTTTGAGCGCAATCGATGAGTATCCATTGGCGAAC
CTTCCCAACGATGCAGCACGAGGCGATAACTTCATTTTCGTTGTATCAAC
ATGTGGCGATGGTCATGTACCGATAACAATGCGGAAGTTCTGGGCGTTTA
TTAGACGTTCCAGCCTTCCTCCAGCCATTCTATCAGACTTGCAGTTTGCC
ATATTCGGATTGGGTGACAGGGCGTACGTCAAATTCAATGCAGCTGCCAG
GAAGCTGTGTACCAGACTCATAGATCTCGGCGCTTCATTGATCACCCCGC
TCGCTCTTGGAGATGATAGTGAGCAGGGTGGATATGACGCTCAACTCCTT
CCGTGGACGGAAAAGCTGCTTCACATTCTCGTTCCTAACTCAACTTCTGT
CTCCGTAAGTGATGCCGAAAATGTGCCACGCATCGAGGTACGACATCTGG
GTCGCCAGATTGAGCATTCAACGCTAAAATGGCGCCCGGGACAAGCCAGA
CGTAAACCTTCGGTGGCTACATATCCGCTTCACGATTCGATTGTGGATCG
AGTGCAAGTGTTAACAAACCCTGATGTGTTAACTGACGATAAAGAAGTTC
TTCATGTTCAACTGGACGTTTCTAACTGCGCAGCTGAAACTGGCCTGCTC
ACATACGAACCTGGCGACATAATTCACGTCATGCCACGAAACAGTGAATC
CGCTGTTGACGCATTTTTAGAACTAACTGGTTTTGATGGCGACGAGCTAA
TCAATGTCTCTGTGCGACAAAGCAAACGTCAGTTTGGGGGCTATCATTTT
AACATCGAAATGCCTTGCACGTTGAGACAGTTGGCATCTGCACAACTTGA
CCTAGCAGCAACTCCACGACGAAGGTTCTTCAATCAACTGGCGCCATTTG
CCACTTTGGATATGGAAAGAGAGAAACTGTTGCACTTTGCATCAATGGAA
GGCACGGAAGATTTAACACAGTATGCCTATCGTGAGAAACGAACCATTCT
ATTGGTGTTGAGAGATTTTCCATCAGCACGTCCCCCTCTTGATTGCTTGA
TTGATATGATTCCTTTGTTGAGACCGCGAGCATTTTCAATCGCTTCCTCA
GCACAGGCTCATGCTGGTAACATTCAAATCTGCGTTTCGATGGTAAAGTA
TATCACGCCGTTACGATTCATGCGAACTGGAGTATGTTCCGGTTTTTTGA
AGACTTTGACAAAAGGAGATTGCGTGCCAATATTTCTAGAAAAAGGAACA
TCGCTACGGTTTAATGAGAAGCGACCAGCTGTGCTTGTCGGTCCGGGTAC
AGGTGTGGCGCCGTTGAGGTCGTACTTGAGTGCCGGTTTGTCTCACAGTT
TACCAAAACTGCTTTTCTTCGGTTGTCGTTTGAAGGATGGCGACTTTTTG
TATGAAAAGGACTTTAACACGTTCCTACAAGATGGAAGGTTAACACAGCT
CATTACGGCTTTTTCTCGCAGCGAGCCGTCGCAAAAGACATATGTGCAAC
ACAAAATGGAAGCGCATGGGAAACAAGTGTGGGAGCTAATTCATCAGAAG
GGCGCATGTGTTTATGTGGCTGGGGCTGCTGGAGACATGCCAAAGGCTGT
TCGACAAGCTGTTGTGGATATTAGTAAGACGTTTGGAAAGCTGGATGAAG
AAAGTTGTGAACTGTATGTGAGACGAATGGAGGCGGAGGGACGTCTGCAA
ATGGAATGTTGGTGA

protein sequence of Gcaud10228.t1

>Gcaud10228.t1 ID=Gcaud10228.t1|Name=Gcaud10228.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=605bp
MTLTPVNCHVLYATATGTAEDVSQQLAQLLVQRGATLKSLSAIDEYPLAN
LPNDAARGDNFIFVVSTCGDGHVPITMRKFWAFIRRSSLPPAILSDLQFA
IFGLGDRAYVKFNAAARKLCTRLIDLGASLITPLALGDDSEQGGYDAQLL
PWTEKLLHILVPNSTSVSVSDAENVPRIEVRHLGRQIEHSTLKWRPGQAR
RKPSVATYPLHDSIVDRVQVLTNPDVLTDDKEVLHVQLDVSNCAAETGLL
TYEPGDIIHVMPRNSESAVDAFLELTGFDGDELINVSVRQSKRQFGGYHF
NIEMPCTLRQLASAQLDLAATPRRRFFNQLAPFATLDMEREKLLHFASME
GTEDLTQYAYREKRTILLVLRDFPSARPPLDCLIDMIPLLRPRAFSIASS
AQAHAGNIQICVSMVKYITPLRFMRTGVCSGFLKTLTKGDCVPIFLEKGT
SLRFNEKRPAVLVGPGTGVAPLRSYLSAGLSHSLPKLLFFGCRLKDGDFL
YEKDFNTFLQDGRLTQLITAFSRSEPSQKTYVQHKMEAHGKQVWELIHQK
GACVYVAGAAGDMPKAVRQAVVDISKTFGKLDEESCELYVRRMEAEGRLQ
MECW*

mRNA from alignment at NODE_1214_length_12569_cov_4.255971:1855..3669-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10228.t1 ID=Gcaud10228.t1|Name=Gcaud10228.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at NODE_1214_length_12569_cov_4.255971:1855..3669- (Gracilaria caudata M_176_S67 male)
ATGACTCTCACCCCCGTTAACTGCCATGTTTTATACGCCACGGCTACTGG
CACTGCCGAAGACGTTTCACAACAACTTGCTCAACTGCTTGTTCAACGTG
GTGCAACACTGAAATCTTTGAGCGCAATCGATGAGTATCCATTGGCGAAC
CTTCCCAACGATGCAGCACGAGGCGATAACTTCATTTTCGTTGTATCAAC
ATGTGGCGATGGTCATGTACCGATAACAATGCGGAAGTTCTGGGCGTTTA
TTAGACGTTCCAGCCTTCCTCCAGCCATTCTATCAGACTTGCAGTTTGCC
ATATTCGGATTGGGTGACAGGGCGTACGTCAAATTCAATGCAGCTGCCAG
GAAGCTGTGTACCAGACTCATAGATCTCGGCGCTTCATTGATCACCCCGC
TCGCTCTTGGAGATGATAGTGAGCAGGGTGGATATGACGCTCAACTCCTT
CCGTGGACGGAAAAGCTGCTTCACATTCTCGTTCCTAACTCAACTTCTGT
CTCCGTAAGTGATGCCGAAAATGTGCCACGCATCGAGGTACGACATCTGG
GTCGCCAGATTGAGCATTCAACGCTAAAATGGCGCCCGGGACAAGCCAGA
CGTAAACCTTCGGTGGCTACATATCCGCTTCACGATTCGATTGTGGATCG
AGTGCAAGTGTTAACAAACCCTGATGTGTTAACTGACGATAAAGAAGTTC
TTCATGTTCAACTGGACGTTTCTAACTGCGCAGCTGAAACTGGCCTGCTC
ACATACGAACCTGGCGACATAATTCACGTCATGCCACGAAACAGTGAATC
CGCTGTTGACGCATTTTTAGAACTAACTGGTTTTGATGGCGACGAGCTAA
TCAATGTCTCTGTGCGACAAAGCAAACGTCAGTTTGGGGGCTATCATTTT
AACATCGAAATGCCTTGCACGTTGAGACAGTTGGCATCTGCACAACTTGA
CCTAGCAGCAACTCCACGACGAAGGTTCTTCAATCAACTGGCGCCATTTG
CCACTTTGGATATGGAAAGAGAGAAACTGTTGCACTTTGCATCAATGGAA
GGCACGGAAGATTTAACACAGTATGCCTATCGTGAGAAACGAACCATTCT
ATTGGTGTTGAGAGATTTTCCATCAGCACGTCCCCCTCTTGATTGCTTGA
TTGATATGATTCCTTTGTTGAGACCGCGAGCATTTTCAATCGCTTCCTCA
GCACAGGCTCATGCTGGTAACATTCAAATCTGCGTTTCGATGGTAAAGTA
TATCACGCCGTTACGATTCATGCGAACTGGAGTATGTTCCGGTTTTTTGA
AGACTTTGACAAAAGGAGATTGCGTGCCAATATTTCTAGAAAAAGGAACA
TCGCTACGGTTTAATGAGAAGCGACCAGCTGTGCTTGTCGGTCCGGGTAC
AGGTGTGGCGCCGTTGAGGTCGTACTTGAGTGCCGGTTTGTCTCACAGTT
TACCAAAACTGCTTTTCTTCGGTTGTCGTTTGAAGGATGGCGACTTTTTG
TATGAAAAGGACTTTAACACGTTCCTACAAGATGGAAGGTTAACACAGCT
CATTACGGCTTTTTCTCGCAGCGAGCCGTCGCAAAAGACATATGTGCAAC
ACAAAATGGAAGCGCATGGGAAACAAGTGTGGGAGCTAATTCATCAGAAG
GGCGCATGTGTTTATGTGGCTGGGGCTGCTGGAGACATGCCAAAGGCTGT
TCGACAAGCTGTTGTGGATATTAGTAAGACGTTTGGAAAGCTGGATGAAG
AAAGTTGTGAACTGTATGTGAGACGAATGGAGGCGGAGGGACGTCTGCAA
ATGGAATGTTGGTGA

Coding sequence (CDS) from alignment at NODE_1214_length_12569_cov_4.255971:1855..3669-

>Gcaud10228.t1 ID=Gcaud10228.t1|Name=Gcaud10228.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1815bp|location=Sequence derived from alignment at NODE_1214_length_12569_cov_4.255971:1855..3669- (Gracilaria caudata M_176_S67 male)
ATGACTCTCACCCCCGTTAACTGCCATGTTTTATACGCCACGGCTACTGG
CACTGCCGAAGACGTTTCACAACAACTTGCTCAACTGCTTGTTCAACGTG
GTGCAACACTGAAATCTTTGAGCGCAATCGATGAGTATCCATTGGCGAAC
CTTCCCAACGATGCAGCACGAGGCGATAACTTCATTTTCGTTGTATCAAC
ATGTGGCGATGGTCATGTACCGATAACAATGCGGAAGTTCTGGGCGTTTA
TTAGACGTTCCAGCCTTCCTCCAGCCATTCTATCAGACTTGCAGTTTGCC
ATATTCGGATTGGGTGACAGGGCGTACGTCAAATTCAATGCAGCTGCCAG
GAAGCTGTGTACCAGACTCATAGATCTCGGCGCTTCATTGATCACCCCGC
TCGCTCTTGGAGATGATAGTGAGCAGGGTGGATATGACGCTCAACTCCTT
CCGTGGACGGAAAAGCTGCTTCACATTCTCGTTCCTAACTCAACTTCTGT
CTCCGTAAGTGATGCCGAAAATGTGCCACGCATCGAGGTACGACATCTGG
GTCGCCAGATTGAGCATTCAACGCTAAAATGGCGCCCGGGACAAGCCAGA
CGTAAACCTTCGGTGGCTACATATCCGCTTCACGATTCGATTGTGGATCG
AGTGCAAGTGTTAACAAACCCTGATGTGTTAACTGACGATAAAGAAGTTC
TTCATGTTCAACTGGACGTTTCTAACTGCGCAGCTGAAACTGGCCTGCTC
ACATACGAACCTGGCGACATAATTCACGTCATGCCACGAAACAGTGAATC
CGCTGTTGACGCATTTTTAGAACTAACTGGTTTTGATGGCGACGAGCTAA
TCAATGTCTCTGTGCGACAAAGCAAACGTCAGTTTGGGGGCTATCATTTT
AACATCGAAATGCCTTGCACGTTGAGACAGTTGGCATCTGCACAACTTGA
CCTAGCAGCAACTCCACGACGAAGGTTCTTCAATCAACTGGCGCCATTTG
CCACTTTGGATATGGAAAGAGAGAAACTGTTGCACTTTGCATCAATGGAA
GGCACGGAAGATTTAACACAGTATGCCTATCGTGAGAAACGAACCATTCT
ATTGGTGTTGAGAGATTTTCCATCAGCACGTCCCCCTCTTGATTGCTTGA
TTGATATGATTCCTTTGTTGAGACCGCGAGCATTTTCAATCGCTTCCTCA
GCACAGGCTCATGCTGGTAACATTCAAATCTGCGTTTCGATGGTAAAGTA
TATCACGCCGTTACGATTCATGCGAACTGGAGTATGTTCCGGTTTTTTGA
AGACTTTGACAAAAGGAGATTGCGTGCCAATATTTCTAGAAAAAGGAACA
TCGCTACGGTTTAATGAGAAGCGACCAGCTGTGCTTGTCGGTCCGGGTAC
AGGTGTGGCGCCGTTGAGGTCGTACTTGAGTGCCGGTTTGTCTCACAGTT
TACCAAAACTGCTTTTCTTCGGTTGTCGTTTGAAGGATGGCGACTTTTTG
TATGAAAAGGACTTTAACACGTTCCTACAAGATGGAAGGTTAACACAGCT
CATTACGGCTTTTTCTCGCAGCGAGCCGTCGCAAAAGACATATGTGCAAC
ACAAAATGGAAGCGCATGGGAAACAAGTGTGGGAGCTAATTCATCAGAAG
GGCGCATGTGTTTATGTGGCTGGGGCTGCTGGAGACATGCCAAAGGCTGT
TCGACAAGCTGTTGTGGATATTAGTAAGACGTTTGGAAAGCTGGATGAAG
AAAGTTGTGAACTGTATGTGAGACGAATGGAGGCGGAGGGACGTCTGCAA
ATGGAATGTTGGTGA