Gcaud10226.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10226.t1
Unique Name	Gcaud10226.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	306

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_481_length_24272_cov_4.615152	contig	NODE_481_length_24272_cov_4.615152:22732..23877 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703751.1
Preferred name	YIPF3
PFAMs	Yip1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00688,ko:K15149
KEGG Reaction	R02111
KEGG Pathway	ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708
Evalue	2.25e-12
EggNOG OGs	KOG3114@1\|root,KOG3114@2759\|Eukaryota
EC	2.4.1.1
Description	Rab GTPase binding
COG category	S
CAZy	GT35
BRITE	ko00000,ko00001,ko01000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10226	Gcaud10226	Gracilaria caudata M_176_S67 male	gene	NODE_481_length_24272_cov_4.615152 22732..23877 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10226.t1	Gcaud10226.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_481_length_24272_cov_4.615152 22732..23877 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10226.t1.stop1	Gcaud10226.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_481_length_24272_cov_4.615152 22732..22734 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10226.t1.CDS1	Gcaud10226.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_481_length_24272_cov_4.615152 22732..22770 -
Gcaud10226.t1.CDS2	Gcaud10226.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_481_length_24272_cov_4.615152 22863..22906 -
Gcaud10226.t1.CDS3	Gcaud10226.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_481_length_24272_cov_4.615152 23043..23877 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10226.t1.exon1	Gcaud10226.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_481_length_24272_cov_4.615152 22732..22770 -
Gcaud10226.t1.exon2	Gcaud10226.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_481_length_24272_cov_4.615152 22863..22906 -
Gcaud10226.t1.exon3	Gcaud10226.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_481_length_24272_cov_4.615152 23043..23877 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10226.t1.intron1	Gcaud10226.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_481_length_24272_cov_4.615152 22771..22862 -
Gcaud10226.t1.intron2	Gcaud10226.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_481_length_24272_cov_4.615152 22907..23042 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10226.t1.start1	Gcaud10226.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_481_length_24272_cov_4.615152 23875..23877 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_481_length_24272_cov_4.615152:22732..23877-
coding sequence from alignment at NODE_481_length_24272_cov_4.615152:22732..23877-

mRNA sequence

>Gcaud10226.t1 ID=Gcaud10226.t1|Name=Gcaud10226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=306bp
MTASTTAASSAPPSSNPFDAAYAPVATGEGGAANPFALYDDGVSDDGADT
GGWENEPAGTRSEPRFYHPRFYAAYFDINVADLTTRLFRALLPYKPLLGW
ADGDEDEMGGTSVPDLYAPVWVTTTLVLALSMGAKCAEFLANVFRKKETT
SLKPSISTLEFSRLWRAASVLYFYVFVFPVVLTLFQCLFAKRSLTQSSVR
SHPLVGTVMVYGYSMTPVVVAACVATLPIRTAQIASMAAAFCIGAFVIML
NLWRDVSVQHRSLTYFVRLLAVLAHAAVARSQLLFREPHLYTRIKQKILM
VLFRL*

spliced messenger RNA

>Gcaud10226.t1 ID=Gcaud10226.t1|Name=Gcaud10226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_481_length_24272_cov_4.615152:22732..23877- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCGTCCACGACAGCCGCGTCCTCGGCGCCGCCGTCGTCCAATCC
GTTCGACGCCGCGTACGCGCCCGTCGCTACCGGAGAAGGTGGCGCTGCGA
ATCCGTTCGCGTTATACGACGACGGCGTCTCTGACGACGGTGCTGACACC
GGCGGCTGGGAGAATGAGCCCGCGGGAACACGATCTGAGCCGCGCTTTTA
TCATCCTCGCTTTTATGCCGCTTACTTCGACATAAACGTCGCAGACTTAA
CTACGCGGCTGTTTCGCGCGCTGTTGCCGTACAAACCGCTACTGGGCTGG
GCCGATGGCGACGAGGACGAGATGGGCGGTACTTCTGTGCCGGACCTTTA
CGCACCGGTTTGGGTTACTACCACGCTGGTACTCGCACTTTCCATGGGCG
CAAAGTGTGCAGAGTTCCTGGCAAATGTGTTCCGCAAGAAGGAAACCACG
TCTTTGAAGCCGTCTATATCAACATTGGAGTTTTCGCGCTTGTGGCGCGC
TGCATCCGTTCTTTATTTCTATGTGTTTGTGTTTCCTGTCGTGCTTACGT
TGTTTCAATGTCTGTTTGCAAAGCGCTCCCTAACACAATCTTCGGTCAGA
TCGCACCCGCTCGTGGGTACTGTTATGGTGTACGGATATTCCATGACTCC
TGTTGTTGTGGCCGCATGCGTAGCTACTTTGCCCATCCGCACGGCGCAGA
TTGCTTCTATGGCTGCGGCGTTTTGTATTGGAGCCTTCGTCATTATGCTC
AACCTATGGCGGGATGTGTCTGTTCAACATCGATCGCTTACATACTTTGT
GCGCTTGCTTGCCGTTTTGGCACATGCTGCCGTTGCTCGTTCACAACTTC
TTTTTCGTGAACCGCACCTATATACCAGGATCAAGCAAAAGATACTCATG
GTGCTCTTCCGGTTGTAA

protein sequence of Gcaud10226.t1

>Gcaud10226.t1 ID=Gcaud10226.t1|Name=Gcaud10226.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=306bp
MTASTTAASSAPPSSNPFDAAYAPVATGEGGAANPFALYDDGVSDDGADT
GGWENEPAGTRSEPRFYHPRFYAAYFDINVADLTTRLFRALLPYKPLLGW
ADGDEDEMGGTSVPDLYAPVWVTTTLVLALSMGAKCAEFLANVFRKKETT
SLKPSISTLEFSRLWRAASVLYFYVFVFPVVLTLFQCLFAKRSLTQSSVR
SHPLVGTVMVYGYSMTPVVVAACVATLPIRTAQIASMAAAFCIGAFVIML
NLWRDVSVQHRSLTYFVRLLAVLAHAAVARSQLLFREPHLYTRIKQKILM
VLFRL*

mRNA from alignment at NODE_481_length_24272_cov_4.615152:22732..23877-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10226.t1 ID=Gcaud10226.t1|Name=Gcaud10226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at NODE_481_length_24272_cov_4.615152:22732..23877- (Gracilaria caudata M_176_S67 male)
ATGACAGCGTCCACGACAGCCGCGTCCTCGGCGCCGCCGTCGTCCAATCC
GTTCGACGCCGCGTACGCGCCCGTCGCTACCGGAGAAGGTGGCGCTGCGA
ATCCGTTCGCGTTATACGACGACGGCGTCTCTGACGACGGTGCTGACACC
GGCGGCTGGGAGAATGAGCCCGCGGGAACACGATCTGAGCCGCGCTTTTA
TCATCCTCGCTTTTATGCCGCTTACTTCGACATAAACGTCGCAGACTTAA
CTACGCGGCTGTTTCGCGCGCTGTTGCCGTACAAACCGCTACTGGGCTGG
GCCGATGGCGACGAGGACGAGATGGGCGGTACTTCTGTGCCGGACCTTTA
CGCACCGGTTTGGGTTACTACCACGCTGGTACTCGCACTTTCCATGGGCG
CAAAGTGTGCAGAGTTCCTGGCAAATGTGTTCCGCAAGAAGGAAACCACG
TCTTTGAAGCCGTCTATATCAACATTGGAGTTTTCGCGCTTGTGGCGCGC
TGCATCCGTTCTTTATTTCTATGTGTTTGTGTTTCCTGTCGTGCTTACGT
TGTTTCAATGTCTGTTTGCAAAGCGCTCCCTAACACAATCTTCGGTCAGA
TCGCACCCGCTCGTGGGTACTGTTATGGTGTACGGATATTCCATGACTCC
TGTTGTTGTGGCCGCATGCGTAGCTACTTTGCCCATCCGCACGGCGCAGA
TTGCTTCTATGGCTGCGGCGTTTTGTATTGGAGCCTTCGTCATTATGCTC
AACCTATGGCGGGATGTGTCTGTTCAACATCGATCGCTTACATACTTTGT
GCGCTTGCTTGCCGTTTTGGCACATGCTGCCGTTGGTACAGCCCTCACTT
TCATCTTCTTTCTGCGATGATTCGTCATTCTTTCAACTACTTCCAACCAA
GCCCAACCTGCCTGAACATCTCCGCTCGTTGCTTCCGTATTGTACACTTG
TAATGCACGTGCTTTGTAAAGCTCGTTCACAACTTCTTTTTCGTGAACCG
CACCTATATACCAGGGTACGCCTCCATGACATTTGTGGTAATGTCTGCCT
CGGTTAGAACAACATGGAGAATTGTCCACACTCATTACTGACGCAACGTC
GTGTCAGATCAAGCAAAAGATACTCATGGTGCTCTTCCGGTTGTAA

Coding sequence (CDS) from alignment at NODE_481_length_24272_cov_4.615152:22732..23877-

>Gcaud10226.t1 ID=Gcaud10226.t1|Name=Gcaud10226.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=918bp|location=Sequence derived from alignment at NODE_481_length_24272_cov_4.615152:22732..23877- (Gracilaria caudata M_176_S67 male)
ATGACAGCGTCCACGACAGCCGCGTCCTCGGCGCCGCCGTCGTCCAATCC
GTTCGACGCCGCGTACGCGCCCGTCGCTACCGGAGAAGGTGGCGCTGCGA
ATCCGTTCGCGTTATACGACGACGGCGTCTCTGACGACGGTGCTGACACC
GGCGGCTGGGAGAATGAGCCCGCGGGAACACGATCTGAGCCGCGCTTTTA
TCATCCTCGCTTTTATGCCGCTTACTTCGACATAAACGTCGCAGACTTAA
CTACGCGGCTGTTTCGCGCGCTGTTGCCGTACAAACCGCTACTGGGCTGG
GCCGATGGCGACGAGGACGAGATGGGCGGTACTTCTGTGCCGGACCTTTA
CGCACCGGTTTGGGTTACTACCACGCTGGTACTCGCACTTTCCATGGGCG
CAAAGTGTGCAGAGTTCCTGGCAAATGTGTTCCGCAAGAAGGAAACCACG
TCTTTGAAGCCGTCTATATCAACATTGGAGTTTTCGCGCTTGTGGCGCGC
TGCATCCGTTCTTTATTTCTATGTGTTTGTGTTTCCTGTCGTGCTTACGT
TGTTTCAATGTCTGTTTGCAAAGCGCTCCCTAACACAATCTTCGGTCAGA
TCGCACCCGCTCGTGGGTACTGTTATGGTGTACGGATATTCCATGACTCC
TGTTGTTGTGGCCGCATGCGTAGCTACTTTGCCCATCCGCACGGCGCAGA
TTGCTTCTATGGCTGCGGCGTTTTGTATTGGAGCCTTCGTCATTATGCTC
AACCTATGGCGGGATGTGTCTGTTCAACATCGATCGCTTACATACTTTGT
GCGCTTGCTTGCCGTTTTGGCACATGCTGCCGTTGCTCGTTCACAACTTC
TTTTTCGTGAACCGCACCTATATACCAGGATCAAGCAAAAGATACTCATG
GTGCTCTTCCGGTTGTAA