Gcaud1022.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1022.t1
Unique Name	Gcaud1022.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	514

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_137_length_44725_cov_4.465632	contig	NODE_137_length_44725_cov_4.465632:20478..22131 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1022	Gcaud1022	Gracilaria caudata M_176_S67 male	gene	NODE_137_length_44725_cov_4.465632 20478..22131 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1022.t1	Gcaud1022.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_137_length_44725_cov_4.465632 20478..22131 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1022.t1.stop1	Gcaud1022.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_137_length_44725_cov_4.465632 20478..20480 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1022.t1.CDS1	Gcaud1022.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_137_length_44725_cov_4.465632 20478..20509 -
Gcaud1022.t1.CDS2	Gcaud1022.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_137_length_44725_cov_4.465632 20622..22131 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1022.t1.exon1	Gcaud1022.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_137_length_44725_cov_4.465632 20478..20509 -
Gcaud1022.t1.exon2	Gcaud1022.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_137_length_44725_cov_4.465632 20622..22131 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1022.t1.intron1	Gcaud1022.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_137_length_44725_cov_4.465632 20510..20621 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1022.t1.start1	Gcaud1022.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_137_length_44725_cov_4.465632 22129..22131 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_137_length_44725_cov_4.465632:20478..22131-
coding sequence from alignment at NODE_137_length_44725_cov_4.465632:20478..22131-

mRNA sequence

>Gcaud1022.t1 ID=Gcaud1022.t1|Name=Gcaud1022.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=514bp
MNVLHLLPLFALLAGQARAFTNLHHAVSSGASPTILRGRTLITLPDNLDA
TAFLATPFVAAPPPPPNQGVRMLEFSAELTRDVVIFDELQENSVSIESCS
RSAPQKKASITLNGAVLDVSDFQPGTAFAINVEDWETNCGQVQPVEGVDD
SDDVLFYTIDGVSSAHQSVTLQMSIVPGSQVVPRVDVQISDELPSLVTLP
KSVVLDDGPLFAATDSLLFSVRNSAVNQTLPFISRPTISHTMNVQVAPGA
QLELDASISASLYKISLRRFYKTEFRWTQSFKAHLDAHFVADLGISGERS
GSVFSRPIPKIGFSKKIWLVGRVRLGAFAKVDWVLDAQLDAGLEAEFSSA
YHLKQRVTAQLIPLRYKAKNLLPANSGSTGRASLNFLNREGENGIRGFVG
VRPALAVMLKFGSRGLEGNVGAKLGLQAHTTIKKPPFQPFTGRGLKIGSC
DICHNLRGSLSIKGKELSLKLLKNGRVKKNQTLVAHLFTIELGTVCALPD
AFCGAIGVPPGCV*

spliced messenger RNA

>Gcaud1022.t1 ID=Gcaud1022.t1|Name=Gcaud1022.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:20478..22131- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTGCTCCATTTGCTTCCATTATTTGCGCTTCTCGCAGGGCAAGC
CCGGGCGTTTACAAATTTGCACCACGCCGTCTCTTCCGGTGCCTCTCCCA
CAATCCTGCGTGGTCGCACTCTCATCACCCTTCCCGATAACCTCGACGCT
ACCGCCTTTCTAGCTACCCCGTTTGTCGCCGCACCACCGCCGCCACCCAA
TCAGGGCGTCCGCATGCTGGAGTTTTCTGCGGAGCTTACCAGAGACGTCG
TAATCTTCGACGAGCTTCAGGAAAACTCTGTGAGCATCGAGTCTTGTTCC
CGTTCCGCACCGCAGAAGAAAGCCTCCATCACGCTCAACGGCGCCGTCCT
TGACGTCTCTGACTTCCAGCCGGGTACCGCATTTGCAATCAACGTCGAAG
ATTGGGAGACAAACTGTGGCCAAGTGCAGCCCGTTGAAGGCGTCGATGAT
TCTGATGATGTCCTGTTCTATACCATCGACGGCGTTTCGTCTGCCCACCA
GAGCGTCACTTTACAAATGAGCATTGTACCTGGTTCCCAAGTTGTCCCCC
GAGTCGATGTACAGATCAGCGATGAGCTACCGTCTTTGGTCACGTTGCCC
AAGTCCGTCGTGTTAGATGACGGCCCGTTATTCGCCGCCACTGACTCCCT
TCTGTTCTCCGTGCGCAATTCTGCTGTCAATCAAACCTTGCCTTTCATCT
CGCGTCCCACTATTTCACACACCATGAACGTGCAAGTCGCGCCCGGTGCT
CAATTAGAACTCGACGCTTCCATATCCGCCAGCTTATACAAAATCTCGCT
GAGGCGCTTCTACAAGACAGAATTCCGCTGGACGCAGAGCTTTAAAGCAC
ATCTTGACGCGCACTTCGTCGCCGATCTCGGCATTAGCGGAGAGCGAAGC
GGTTCAGTGTTCAGCAGGCCCATCCCTAAGATAGGCTTTTCCAAGAAGAT
CTGGCTCGTTGGGCGTGTTCGTCTGGGCGCGTTTGCCAAAGTAGATTGGG
TTCTTGACGCTCAGCTGGATGCAGGACTGGAGGCTGAATTCAGTTCGGCT
TATCATCTCAAGCAACGTGTGACCGCGCAGCTTATTCCGCTGCGTTACAA
AGCCAAGAATCTCCTTCCTGCGAACTCGGGCAGTACCGGAAGAGCAAGCC
TCAATTTCTTAAACCGCGAAGGCGAAAATGGTATCAGGGGTTTTGTGGGC
GTGCGCCCGGCGCTTGCTGTCATGCTCAAATTTGGTAGCAGGGGTCTTGA
AGGCAATGTCGGAGCCAAGCTAGGATTGCAAGCCCACACCACCATTAAGA
AACCCCCATTCCAACCATTTACCGGACGTGGATTGAAGATTGGCAGCTGC
GATATTTGCCATAATCTGAGAGGCTCTCTAAGTATTAAGGGAAAAGAGCT
ATCTCTTAAATTGCTCAAGAATGGCCGAGTGAAGAAGAATCAGACCCTCG
TGGCACACTTATTCACCATTGAACTGGGTACCGTTTGCGCGTTGCCGGAT
GCCTTCTGTGGTGCGATAGGTGTACCACCGGGATGTGTGTAA

protein sequence of Gcaud1022.t1

>Gcaud1022.t1 ID=Gcaud1022.t1|Name=Gcaud1022.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=514bp
MNVLHLLPLFALLAGQARAFTNLHHAVSSGASPTILRGRTLITLPDNLDA
TAFLATPFVAAPPPPPNQGVRMLEFSAELTRDVVIFDELQENSVSIESCS
RSAPQKKASITLNGAVLDVSDFQPGTAFAINVEDWETNCGQVQPVEGVDD
SDDVLFYTIDGVSSAHQSVTLQMSIVPGSQVVPRVDVQISDELPSLVTLP
KSVVLDDGPLFAATDSLLFSVRNSAVNQTLPFISRPTISHTMNVQVAPGA
QLELDASISASLYKISLRRFYKTEFRWTQSFKAHLDAHFVADLGISGERS
GSVFSRPIPKIGFSKKIWLVGRVRLGAFAKVDWVLDAQLDAGLEAEFSSA
YHLKQRVTAQLIPLRYKAKNLLPANSGSTGRASLNFLNREGENGIRGFVG
VRPALAVMLKFGSRGLEGNVGAKLGLQAHTTIKKPPFQPFTGRGLKIGSC
DICHNLRGSLSIKGKELSLKLLKNGRVKKNQTLVAHLFTIELGTVCALPD
AFCGAIGVPPGCV*

mRNA from alignment at NODE_137_length_44725_cov_4.465632:20478..22131-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1022.t1 ID=Gcaud1022.t1|Name=Gcaud1022.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1654bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:20478..22131- (Gracilaria caudata M_176_S67 male)
ATGAATGTGCTCCATTTGCTTCCATTATTTGCGCTTCTCGCAGGGCAAGC
CCGGGCGTTTACAAATTTGCACCACGCCGTCTCTTCCGGTGCCTCTCCCA
CAATCCTGCGTGGTCGCACTCTCATCACCCTTCCCGATAACCTCGACGCT
ACCGCCTTTCTAGCTACCCCGTTTGTCGCCGCACCACCGCCGCCACCCAA
TCAGGGCGTCCGCATGCTGGAGTTTTCTGCGGAGCTTACCAGAGACGTCG
TAATCTTCGACGAGCTTCAGGAAAACTCTGTGAGCATCGAGTCTTGTTCC
CGTTCCGCACCGCAGAAGAAAGCCTCCATCACGCTCAACGGCGCCGTCCT
TGACGTCTCTGACTTCCAGCCGGGTACCGCATTTGCAATCAACGTCGAAG
ATTGGGAGACAAACTGTGGCCAAGTGCAGCCCGTTGAAGGCGTCGATGAT
TCTGATGATGTCCTGTTCTATACCATCGACGGCGTTTCGTCTGCCCACCA
GAGCGTCACTTTACAAATGAGCATTGTACCTGGTTCCCAAGTTGTCCCCC
GAGTCGATGTACAGATCAGCGATGAGCTACCGTCTTTGGTCACGTTGCCC
AAGTCCGTCGTGTTAGATGACGGCCCGTTATTCGCCGCCACTGACTCCCT
TCTGTTCTCCGTGCGCAATTCTGCTGTCAATCAAACCTTGCCTTTCATCT
CGCGTCCCACTATTTCACACACCATGAACGTGCAAGTCGCGCCCGGTGCT
CAATTAGAACTCGACGCTTCCATATCCGCCAGCTTATACAAAATCTCGCT
GAGGCGCTTCTACAAGACAGAATTCCGCTGGACGCAGAGCTTTAAAGCAC
ATCTTGACGCGCACTTCGTCGCCGATCTCGGCATTAGCGGAGAGCGAAGC
GGTTCAGTGTTCAGCAGGCCCATCCCTAAGATAGGCTTTTCCAAGAAGAT
CTGGCTCGTTGGGCGTGTTCGTCTGGGCGCGTTTGCCAAAGTAGATTGGG
TTCTTGACGCTCAGCTGGATGCAGGACTGGAGGCTGAATTCAGTTCGGCT
TATCATCTCAAGCAACGTGTGACCGCGCAGCTTATTCCGCTGCGTTACAA
AGCCAAGAATCTCCTTCCTGCGAACTCGGGCAGTACCGGAAGAGCAAGCC
TCAATTTCTTAAACCGCGAAGGCGAAAATGGTATCAGGGGTTTTGTGGGC
GTGCGCCCGGCGCTTGCTGTCATGCTCAAATTTGGTAGCAGGGGTCTTGA
AGGCAATGTCGGAGCCAAGCTAGGATTGCAAGCCCACACCACCATTAAGA
AACCCCCATTCCAACCATTTACCGGACGTGGATTGAAGATTGGCAGCTGC
GATATTTGCCATAATCTGAGAGGCTCTCTAAGTATTAAGGGAAAAGAGCT
ATCTCTTAAATTGCTCAAGAATGGCCGAGTGAAGAAGAATCAGACCCTCG
TGGCACACTTATTCACCATTGAACTGGGTACCGTTTGCGCGTTGCCGGAT
GCCTTCTGTGGTAATTCACTCACTTGTCGAAGGTGCTCTTCCGTTGACAT
GTGCCCTTCTGGTTACACCTGCCTTGACGGAGAATGCGTTCGTCTACGCT
TGCCTGGTCAACCATGCCGAAGGTGCGATAGGTGTACCACCGGGATGTGT
GTAA

Coding sequence (CDS) from alignment at NODE_137_length_44725_cov_4.465632:20478..22131-

>Gcaud1022.t1 ID=Gcaud1022.t1|Name=Gcaud1022.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1542bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:20478..22131- (Gracilaria caudata M_176_S67 male)
ATGAATGTGCTCCATTTGCTTCCATTATTTGCGCTTCTCGCAGGGCAAGC
CCGGGCGTTTACAAATTTGCACCACGCCGTCTCTTCCGGTGCCTCTCCCA
CAATCCTGCGTGGTCGCACTCTCATCACCCTTCCCGATAACCTCGACGCT
ACCGCCTTTCTAGCTACCCCGTTTGTCGCCGCACCACCGCCGCCACCCAA
TCAGGGCGTCCGCATGCTGGAGTTTTCTGCGGAGCTTACCAGAGACGTCG
TAATCTTCGACGAGCTTCAGGAAAACTCTGTGAGCATCGAGTCTTGTTCC
CGTTCCGCACCGCAGAAGAAAGCCTCCATCACGCTCAACGGCGCCGTCCT
TGACGTCTCTGACTTCCAGCCGGGTACCGCATTTGCAATCAACGTCGAAG
ATTGGGAGACAAACTGTGGCCAAGTGCAGCCCGTTGAAGGCGTCGATGAT
TCTGATGATGTCCTGTTCTATACCATCGACGGCGTTTCGTCTGCCCACCA
GAGCGTCACTTTACAAATGAGCATTGTACCTGGTTCCCAAGTTGTCCCCC
GAGTCGATGTACAGATCAGCGATGAGCTACCGTCTTTGGTCACGTTGCCC
AAGTCCGTCGTGTTAGATGACGGCCCGTTATTCGCCGCCACTGACTCCCT
TCTGTTCTCCGTGCGCAATTCTGCTGTCAATCAAACCTTGCCTTTCATCT
CGCGTCCCACTATTTCACACACCATGAACGTGCAAGTCGCGCCCGGTGCT
CAATTAGAACTCGACGCTTCCATATCCGCCAGCTTATACAAAATCTCGCT
GAGGCGCTTCTACAAGACAGAATTCCGCTGGACGCAGAGCTTTAAAGCAC
ATCTTGACGCGCACTTCGTCGCCGATCTCGGCATTAGCGGAGAGCGAAGC
GGTTCAGTGTTCAGCAGGCCCATCCCTAAGATAGGCTTTTCCAAGAAGAT
CTGGCTCGTTGGGCGTGTTCGTCTGGGCGCGTTTGCCAAAGTAGATTGGG
TTCTTGACGCTCAGCTGGATGCAGGACTGGAGGCTGAATTCAGTTCGGCT
TATCATCTCAAGCAACGTGTGACCGCGCAGCTTATTCCGCTGCGTTACAA
AGCCAAGAATCTCCTTCCTGCGAACTCGGGCAGTACCGGAAGAGCAAGCC
TCAATTTCTTAAACCGCGAAGGCGAAAATGGTATCAGGGGTTTTGTGGGC
GTGCGCCCGGCGCTTGCTGTCATGCTCAAATTTGGTAGCAGGGGTCTTGA
AGGCAATGTCGGAGCCAAGCTAGGATTGCAAGCCCACACCACCATTAAGA
AACCCCCATTCCAACCATTTACCGGACGTGGATTGAAGATTGGCAGCTGC
GATATTTGCCATAATCTGAGAGGCTCTCTAAGTATTAAGGGAAAAGAGCT
ATCTCTTAAATTGCTCAAGAATGGCCGAGTGAAGAAGAATCAGACCCTCG
TGGCACACTTATTCACCATTGAACTGGGTACCGTTTGCGCGTTGCCGGAT
GCCTTCTGTGGTGCGATAGGTGTACCACCGGGATGTGTGTAA