Gcaud10208.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10208.t1
Unique Name	Gcaud10208.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	690

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_516_length_23259_cov_4.289667	contig	NODE_516_length_23259_cov_4.289667:6356..8425 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMF066CT
PFAMs	GIDA,GIDA_assoc
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00053,RC00209,RC00870
KEGG ko	ko:K03495
KEGG Reaction	R08701
GOs	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363
Evalue	1.72e-290
EggNOG OGs	COG0445@1\|root,KOG2311@2759\|Eukaryota
Description	mitochondrial tRNA wobble uridine modification
COG category	D
BRITE	ko00000,ko03016,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10208	Gcaud10208	Gracilaria caudata M_176_S67 male	gene	NODE_516_length_23259_cov_4.289667 6356..8425 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10208.t1.start1	Gcaud10208.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_516_length_23259_cov_4.289667 6356..6358 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10208.t1.CDS1	Gcaud10208.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_516_length_23259_cov_4.289667 6356..8425 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10208.t1.exon1	Gcaud10208.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_516_length_23259_cov_4.289667 6356..8425 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10208.t1.stop1	Gcaud10208.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_516_length_23259_cov_4.289667 8423..8425 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10208.t1	Gcaud10208.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_516_length_23259_cov_4.289667 6356..8425 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_516_length_23259_cov_4.289667:6356..8425+
coding sequence from alignment at NODE_516_length_23259_cov_4.289667:6356..8425+

mRNA sequence

>Gcaud10208.t1 ID=Gcaud10208.t1|Name=Gcaud10208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=690bp
MTSFICPIPLHQSPCHKQLASRLRPPSPAPRKRKPRPTALLRESKRVINW
HPKSYDVVVIGAGHSGCEAALAASNLNANTLLLTMNLDKIAWQPCNPAVG
GPAKSTLVHETDALGGWIGKIADRTYLQRRILNRSKGPAVWALRAQTDKR
EYSQMMTNVLNQRSLTPFLDIREGMVHDLIIGDNDHIVGVTTFFGAAFRT
KCVIITTGTFLQGTIWVGARSMPAGRAGELPATGLTQTLMDLGFETGRLK
TGTPPRVDSRSVNYSIMEPQPSDQQDHWFSFDPSEWNPRETMPCYLTRTS
PRTHQMIRENLHLTPKYGGFMESTGPRYCPSIEDKIVRFTDKLSHQIFIE
PEGRTIPELYIQGFSTGLPEDVQLEVLRTIPGLENATMVRPAYSVDYDYI
PATQLHTTLMTKNVDGLFFAGQVCGTTGYEEAASQGLISGINAARRALSL
DMISLSRESSFIGTMIDDLCTKPLREPYRVLTSRSEYRLILRADNADSRM
TPLGRSIGMIDDYRWELFEEKSKRIQGEMKRLLQTRVSGNSEDAEQLRKH
GASIKQSSTLADVLRQPALSYSCLQQAGLHGQLQNAYERERVETEVKYEG
YIKRQFDEIEKTKKAFSKRIPDIDYSCVNGLRLEAREKLTKIRPETIGQA
ARIGGVNPADIAVLNVFVEKMKVQNAGKSSGVKVGSTGD*

spliced messenger RNA

>Gcaud10208.t1 ID=Gcaud10208.t1|Name=Gcaud10208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at NODE_516_length_23259_cov_4.289667:6356..8425+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCCTTCATCTGTCCCATACCCCTCCATCAAAGCCCGTGCCACAA
GCAGCTCGCCTCCAGACTGCGTCCTCCCTCCCCCGCTCCGCGCAAGCGGA
AACCACGTCCCACAGCGCTGCTTCGCGAGTCAAAGCGCGTCATAAACTGG
CATCCAAAGAGCTACGATGTAGTGGTCATAGGAGCCGGCCATTCCGGCTG
TGAAGCGGCTCTGGCCGCATCAAATCTAAACGCGAACACGCTGTTACTTA
CCATGAATCTCGATAAGATTGCTTGGCAGCCGTGCAACCCGGCCGTGGGT
GGCCCGGCCAAGTCTACGTTGGTGCATGAGACCGATGCGTTGGGAGGTTG
GATAGGGAAAATTGCCGACAGGACGTATTTGCAGCGACGCATATTGAATC
GCTCAAAGGGTCCTGCCGTGTGGGCTTTGCGCGCGCAAACCGACAAGAGA
GAGTATTCTCAGATGATGACCAATGTGTTGAATCAGCGCTCATTGACACC
GTTTCTGGATATCAGAGAAGGAATGGTGCATGATTTAATCATCGGTGATA
ATGATCACATCGTTGGTGTTACTACCTTCTTCGGAGCTGCCTTTCGAACA
AAATGTGTCATCATCACTACTGGCACGTTTTTGCAGGGCACCATTTGGGT
TGGCGCGCGCAGCATGCCTGCAGGTCGCGCCGGGGAGCTCCCGGCTACTG
GGCTCACACAGACTTTGATGGACCTAGGCTTTGAGACAGGCAGATTGAAA
ACTGGTACGCCTCCTCGAGTTGATTCTCGGTCCGTCAACTACTCAATTAT
GGAGCCACAACCGTCTGATCAACAAGATCATTGGTTCAGTTTTGATCCAT
CTGAATGGAATCCGCGTGAAACCATGCCCTGTTATCTCACCCGAACGTCG
CCGCGCACTCATCAAATGATACGAGAAAACCTTCATCTCACACCCAAGTA
CGGTGGTTTTATGGAATCTACCGGACCTCGATATTGCCCCAGCATTGAGG
ATAAGATTGTGAGATTCACTGACAAGCTTTCGCATCAGATCTTTATTGAA
CCTGAAGGTCGAACCATTCCGGAGCTTTACATTCAGGGGTTTAGTACGGG
ACTTCCGGAAGATGTTCAACTTGAGGTTCTTCGCACCATTCCGGGATTGG
AAAACGCAACGATGGTGCGTCCTGCTTATAGCGTTGATTACGATTACATA
CCTGCCACCCAACTGCATACCACATTGATGACCAAGAACGTGGATGGGTT
GTTTTTTGCGGGACAGGTGTGCGGTACCACTGGTTACGAAGAAGCCGCAT
CGCAGGGGCTTATTTCAGGTATTAACGCTGCCAGACGCGCGCTTAGCTTG
GATATGATTTCGTTGTCGCGAGAAAGTTCATTTATTGGCACAATGATTGA
TGACCTTTGCACAAAACCTTTACGAGAGCCGTATCGCGTGCTCACGTCGC
GTTCAGAGTATCGTCTGATCCTGAGAGCGGATAACGCGGATAGTCGAATG
ACGCCGTTGGGTAGGTCAATTGGAATGATCGATGATTATCGATGGGAGTT
ATTCGAAGAGAAATCAAAACGAATTCAAGGCGAGATGAAACGACTGCTTC
AGACGCGTGTATCTGGAAACAGTGAGGATGCGGAACAACTTCGCAAGCAC
GGGGCATCGATAAAACAAAGCTCTACGTTGGCAGACGTGCTTAGACAACC
AGCACTGAGCTACAGCTGTTTGCAACAAGCAGGACTTCACGGACAACTTC
AAAACGCATATGAACGAGAGCGTGTGGAGACTGAAGTCAAATATGAAGGC
TACATCAAGCGACAGTTTGACGAGATTGAGAAGACGAAGAAAGCATTTTC
CAAACGAATACCCGACATTGATTATTCTTGCGTGAACGGATTGAGACTTG
AGGCGAGGGAAAAGTTGACAAAGATTCGTCCCGAGACGATTGGACAGGCA
GCTCGTATCGGAGGCGTCAATCCGGCTGATATTGCTGTGCTTAATGTTTT
TGTGGAGAAGATGAAGGTTCAGAATGCTGGCAAAAGTTCTGGAGTTAAGG
TGGGGTCTACAGGGGATTGA

protein sequence of Gcaud10208.t1

>Gcaud10208.t1 ID=Gcaud10208.t1|Name=Gcaud10208.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=690bp
MTSFICPIPLHQSPCHKQLASRLRPPSPAPRKRKPRPTALLRESKRVINW
HPKSYDVVVIGAGHSGCEAALAASNLNANTLLLTMNLDKIAWQPCNPAVG
GPAKSTLVHETDALGGWIGKIADRTYLQRRILNRSKGPAVWALRAQTDKR
EYSQMMTNVLNQRSLTPFLDIREGMVHDLIIGDNDHIVGVTTFFGAAFRT
KCVIITTGTFLQGTIWVGARSMPAGRAGELPATGLTQTLMDLGFETGRLK
TGTPPRVDSRSVNYSIMEPQPSDQQDHWFSFDPSEWNPRETMPCYLTRTS
PRTHQMIRENLHLTPKYGGFMESTGPRYCPSIEDKIVRFTDKLSHQIFIE
PEGRTIPELYIQGFSTGLPEDVQLEVLRTIPGLENATMVRPAYSVDYDYI
PATQLHTTLMTKNVDGLFFAGQVCGTTGYEEAASQGLISGINAARRALSL
DMISLSRESSFIGTMIDDLCTKPLREPYRVLTSRSEYRLILRADNADSRM
TPLGRSIGMIDDYRWELFEEKSKRIQGEMKRLLQTRVSGNSEDAEQLRKH
GASIKQSSTLADVLRQPALSYSCLQQAGLHGQLQNAYERERVETEVKYEG
YIKRQFDEIEKTKKAFSKRIPDIDYSCVNGLRLEAREKLTKIRPETIGQA
ARIGGVNPADIAVLNVFVEKMKVQNAGKSSGVKVGSTGD*

mRNA from alignment at NODE_516_length_23259_cov_4.289667:6356..8425+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10208.t1 ID=Gcaud10208.t1|Name=Gcaud10208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at NODE_516_length_23259_cov_4.289667:6356..8425+ (Gracilaria caudata M_176_S67 male)
ATGACGTCCTTCATCTGTCCCATACCCCTCCATCAAAGCCCGTGCCACAA
GCAGCTCGCCTCCAGACTGCGTCCTCCCTCCCCCGCTCCGCGCAAGCGGA
AACCACGTCCCACAGCGCTGCTTCGCGAGTCAAAGCGCGTCATAAACTGG
CATCCAAAGAGCTACGATGTAGTGGTCATAGGAGCCGGCCATTCCGGCTG
TGAAGCGGCTCTGGCCGCATCAAATCTAAACGCGAACACGCTGTTACTTA
CCATGAATCTCGATAAGATTGCTTGGCAGCCGTGCAACCCGGCCGTGGGT
GGCCCGGCCAAGTCTACGTTGGTGCATGAGACCGATGCGTTGGGAGGTTG
GATAGGGAAAATTGCCGACAGGACGTATTTGCAGCGACGCATATTGAATC
GCTCAAAGGGTCCTGCCGTGTGGGCTTTGCGCGCGCAAACCGACAAGAGA
GAGTATTCTCAGATGATGACCAATGTGTTGAATCAGCGCTCATTGACACC
GTTTCTGGATATCAGAGAAGGAATGGTGCATGATTTAATCATCGGTGATA
ATGATCACATCGTTGGTGTTACTACCTTCTTCGGAGCTGCCTTTCGAACA
AAATGTGTCATCATCACTACTGGCACGTTTTTGCAGGGCACCATTTGGGT
TGGCGCGCGCAGCATGCCTGCAGGTCGCGCCGGGGAGCTCCCGGCTACTG
GGCTCACACAGACTTTGATGGACCTAGGCTTTGAGACAGGCAGATTGAAA
ACTGGTACGCCTCCTCGAGTTGATTCTCGGTCCGTCAACTACTCAATTAT
GGAGCCACAACCGTCTGATCAACAAGATCATTGGTTCAGTTTTGATCCAT
CTGAATGGAATCCGCGTGAAACCATGCCCTGTTATCTCACCCGAACGTCG
CCGCGCACTCATCAAATGATACGAGAAAACCTTCATCTCACACCCAAGTA
CGGTGGTTTTATGGAATCTACCGGACCTCGATATTGCCCCAGCATTGAGG
ATAAGATTGTGAGATTCACTGACAAGCTTTCGCATCAGATCTTTATTGAA
CCTGAAGGTCGAACCATTCCGGAGCTTTACATTCAGGGGTTTAGTACGGG
ACTTCCGGAAGATGTTCAACTTGAGGTTCTTCGCACCATTCCGGGATTGG
AAAACGCAACGATGGTGCGTCCTGCTTATAGCGTTGATTACGATTACATA
CCTGCCACCCAACTGCATACCACATTGATGACCAAGAACGTGGATGGGTT
GTTTTTTGCGGGACAGGTGTGCGGTACCACTGGTTACGAAGAAGCCGCAT
CGCAGGGGCTTATTTCAGGTATTAACGCTGCCAGACGCGCGCTTAGCTTG
GATATGATTTCGTTGTCGCGAGAAAGTTCATTTATTGGCACAATGATTGA
TGACCTTTGCACAAAACCTTTACGAGAGCCGTATCGCGTGCTCACGTCGC
GTTCAGAGTATCGTCTGATCCTGAGAGCGGATAACGCGGATAGTCGAATG
ACGCCGTTGGGTAGGTCAATTGGAATGATCGATGATTATCGATGGGAGTT
ATTCGAAGAGAAATCAAAACGAATTCAAGGCGAGATGAAACGACTGCTTC
AGACGCGTGTATCTGGAAACAGTGAGGATGCGGAACAACTTCGCAAGCAC
GGGGCATCGATAAAACAAAGCTCTACGTTGGCAGACGTGCTTAGACAACC
AGCACTGAGCTACAGCTGTTTGCAACAAGCAGGACTTCACGGACAACTTC
AAAACGCATATGAACGAGAGCGTGTGGAGACTGAAGTCAAATATGAAGGC
TACATCAAGCGACAGTTTGACGAGATTGAGAAGACGAAGAAAGCATTTTC
CAAACGAATACCCGACATTGATTATTCTTGCGTGAACGGATTGAGACTTG
AGGCGAGGGAAAAGTTGACAAAGATTCGTCCCGAGACGATTGGACAGGCA
GCTCGTATCGGAGGCGTCAATCCGGCTGATATTGCTGTGCTTAATGTTTT
TGTGGAGAAGATGAAGGTTCAGAATGCTGGCAAAAGTTCTGGAGTTAAGG
TGGGGTCTACAGGGGATTGA

Coding sequence (CDS) from alignment at NODE_516_length_23259_cov_4.289667:6356..8425+

>Gcaud10208.t1 ID=Gcaud10208.t1|Name=Gcaud10208.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2070bp|location=Sequence derived from alignment at NODE_516_length_23259_cov_4.289667:6356..8425+ (Gracilaria caudata M_176_S67 male)
ATGACGTCCTTCATCTGTCCCATACCCCTCCATCAAAGCCCGTGCCACAA
GCAGCTCGCCTCCAGACTGCGTCCTCCCTCCCCCGCTCCGCGCAAGCGGA
AACCACGTCCCACAGCGCTGCTTCGCGAGTCAAAGCGCGTCATAAACTGG
CATCCAAAGAGCTACGATGTAGTGGTCATAGGAGCCGGCCATTCCGGCTG
TGAAGCGGCTCTGGCCGCATCAAATCTAAACGCGAACACGCTGTTACTTA
CCATGAATCTCGATAAGATTGCTTGGCAGCCGTGCAACCCGGCCGTGGGT
GGCCCGGCCAAGTCTACGTTGGTGCATGAGACCGATGCGTTGGGAGGTTG
GATAGGGAAAATTGCCGACAGGACGTATTTGCAGCGACGCATATTGAATC
GCTCAAAGGGTCCTGCCGTGTGGGCTTTGCGCGCGCAAACCGACAAGAGA
GAGTATTCTCAGATGATGACCAATGTGTTGAATCAGCGCTCATTGACACC
GTTTCTGGATATCAGAGAAGGAATGGTGCATGATTTAATCATCGGTGATA
ATGATCACATCGTTGGTGTTACTACCTTCTTCGGAGCTGCCTTTCGAACA
AAATGTGTCATCATCACTACTGGCACGTTTTTGCAGGGCACCATTTGGGT
TGGCGCGCGCAGCATGCCTGCAGGTCGCGCCGGGGAGCTCCCGGCTACTG
GGCTCACACAGACTTTGATGGACCTAGGCTTTGAGACAGGCAGATTGAAA
ACTGGTACGCCTCCTCGAGTTGATTCTCGGTCCGTCAACTACTCAATTAT
GGAGCCACAACCGTCTGATCAACAAGATCATTGGTTCAGTTTTGATCCAT
CTGAATGGAATCCGCGTGAAACCATGCCCTGTTATCTCACCCGAACGTCG
CCGCGCACTCATCAAATGATACGAGAAAACCTTCATCTCACACCCAAGTA
CGGTGGTTTTATGGAATCTACCGGACCTCGATATTGCCCCAGCATTGAGG
ATAAGATTGTGAGATTCACTGACAAGCTTTCGCATCAGATCTTTATTGAA
CCTGAAGGTCGAACCATTCCGGAGCTTTACATTCAGGGGTTTAGTACGGG
ACTTCCGGAAGATGTTCAACTTGAGGTTCTTCGCACCATTCCGGGATTGG
AAAACGCAACGATGGTGCGTCCTGCTTATAGCGTTGATTACGATTACATA
CCTGCCACCCAACTGCATACCACATTGATGACCAAGAACGTGGATGGGTT
GTTTTTTGCGGGACAGGTGTGCGGTACCACTGGTTACGAAGAAGCCGCAT
CGCAGGGGCTTATTTCAGGTATTAACGCTGCCAGACGCGCGCTTAGCTTG
GATATGATTTCGTTGTCGCGAGAAAGTTCATTTATTGGCACAATGATTGA
TGACCTTTGCACAAAACCTTTACGAGAGCCGTATCGCGTGCTCACGTCGC
GTTCAGAGTATCGTCTGATCCTGAGAGCGGATAACGCGGATAGTCGAATG
ACGCCGTTGGGTAGGTCAATTGGAATGATCGATGATTATCGATGGGAGTT
ATTCGAAGAGAAATCAAAACGAATTCAAGGCGAGATGAAACGACTGCTTC
AGACGCGTGTATCTGGAAACAGTGAGGATGCGGAACAACTTCGCAAGCAC
GGGGCATCGATAAAACAAAGCTCTACGTTGGCAGACGTGCTTAGACAACC
AGCACTGAGCTACAGCTGTTTGCAACAAGCAGGACTTCACGGACAACTTC
AAAACGCATATGAACGAGAGCGTGTGGAGACTGAAGTCAAATATGAAGGC
TACATCAAGCGACAGTTTGACGAGATTGAGAAGACGAAGAAAGCATTTTC
CAAACGAATACCCGACATTGATTATTCTTGCGTGAACGGATTGAGACTTG
AGGCGAGGGAAAAGTTGACAAAGATTCGTCCCGAGACGATTGGACAGGCA
GCTCGTATCGGAGGCGTCAATCCGGCTGATATTGCTGTGCTTAATGTTTT
TGTGGAGAAGATGAAGGTTCAGAATGCTGGCAAAAGTTCTGGAGTTAAGG
TGGGGTCTACAGGGGATTGA