Gcaud10202.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10202.t1
Unique NameGcaud10202.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length28
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2532_length_5388_cov_4.314329contigNODE_2532_length_5388_cov_4.314329:977..1325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10202Gcaud10202Gracilaria caudata M_176_S67 malegeneNODE_2532_length_5388_cov_4.314329 977..1325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10202.t1Gcaud10202.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2532_length_5388_cov_4.314329 977..1325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10202.t1.CDS1Gcaud10202.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2532_length_5388_cov_4.314329 977..1003 -
Gcaud10202.t1.CDS2Gcaud10202.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2532_length_5388_cov_4.314329 1081..1120 -
Gcaud10202.t1.CDS3Gcaud10202.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2532_length_5388_cov_4.314329 1212..1221 -
Gcaud10202.t1.CDS4Gcaud10202.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_2532_length_5388_cov_4.314329 1321..1325 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10202.t1.exon1Gcaud10202.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2532_length_5388_cov_4.314329 977..1003 -
Gcaud10202.t1.exon2Gcaud10202.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2532_length_5388_cov_4.314329 1081..1120 -
Gcaud10202.t1.exon3Gcaud10202.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2532_length_5388_cov_4.314329 1212..1221 -
Gcaud10202.t1.exon4Gcaud10202.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_2532_length_5388_cov_4.314329 1321..1325 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10202.t1.intron1Gcaud10202.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2532_length_5388_cov_4.314329 1004..1080 -
Gcaud10202.t1.intron2Gcaud10202.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2532_length_5388_cov_4.314329 1121..1211 -
Gcaud10202.t1.intron3Gcaud10202.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_2532_length_5388_cov_4.314329 1222..1320 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10202.t1.start1Gcaud10202.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2532_length_5388_cov_4.314329 1323..1325 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10202.t1 ID=Gcaud10202.t1|Name=Gcaud10202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=28bp
MTASLVLLRPIGTTQLRLAPVTCGTRHX
back to top

spliced messenger RNA

>Gcaud10202.t1 ID=Gcaud10202.t1|Name=Gcaud10202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=82bp|location=Sequence derived from alignment at NODE_2532_length_5388_cov_4.314329:977..1325- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCATCGCTGGTGCTCTTGAGACCTATTGGAACAACTCAATTGCG
ACTCGCACCTGTCACCTGCGGAACCCGCCACA
back to top

protein sequence of Gcaud10202.t1

>Gcaud10202.t1 ID=Gcaud10202.t1|Name=Gcaud10202.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=28bp
MTASLVLLRPIGTTQLRLAPVTCGTRHX
back to top

mRNA from alignment at NODE_2532_length_5388_cov_4.314329:977..1325-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10202.t1 ID=Gcaud10202.t1|Name=Gcaud10202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=349bp|location=Sequence derived from alignment at NODE_2532_length_5388_cov_4.314329:977..1325- (Gracilaria caudata M_176_S67 male)
ATGACGTACGTATCCCACAACATGCAACGCTTGTACTGCTCCTGCAACTG
AGAATGGCCACGCCGCTAACGTTGACCCACATTCTGTATTGCTCACTATG
TCAGGGCATCGCTGGTACAGGAGTCCATCCAGACCAGGTTTCGATCGGCT
GCCGATCTTCAGAATTGCCGAATCGACCCCTCGGAAACGTGCCTCCTTCG
TGGAGGTGCTCTTGAGACCTATTGGAACAACTCAATTGCGACTCGGTAAG
TTGCACGGTGTTCGGAACTGTTGAAGAGTTTAATCTTTCAACTGACTAAC
GGGTTTGTTTCTCTCACTACAGCACCTGTCACCTGCGGAACCCGCCACA
back to top

Coding sequence (CDS) from alignment at NODE_2532_length_5388_cov_4.314329:977..1325-

>Gcaud10202.t1 ID=Gcaud10202.t1|Name=Gcaud10202.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=82bp|location=Sequence derived from alignment at NODE_2532_length_5388_cov_4.314329:977..1325- (Gracilaria caudata M_176_S67 male)
ATGACGGCATCGCTGGTGCTCTTGAGACCTATTGGAACAACTCAATTGCG
ACTCGCACCTGTCACCTGCGGAACCCGCCACA
back to top