Gcaud1020.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1020.t1
Unique Name	Gcaud1020.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_137_length_44725_cov_4.465632	contig	NODE_137_length_44725_cov_4.465632:11926..14974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1020	Gcaud1020	Gracilaria caudata M_176_S67 male	gene	NODE_137_length_44725_cov_4.465632 11926..14974 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1020.t1	Gcaud1020.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_137_length_44725_cov_4.465632 11926..14974 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1020.t1.start1	Gcaud1020.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_137_length_44725_cov_4.465632 11926..11928 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1020.t1.CDS1	Gcaud1020.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_137_length_44725_cov_4.465632 11926..12860 +
Gcaud1020.t1.CDS2	Gcaud1020.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_137_length_44725_cov_4.465632 14848..14852 +
Gcaud1020.t1.CDS3	Gcaud1020.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_137_length_44725_cov_4.465632 14964..14974 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1020.t1.exon1	Gcaud1020.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_137_length_44725_cov_4.465632 11926..12860 +
Gcaud1020.t1.exon2	Gcaud1020.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_137_length_44725_cov_4.465632 14848..14852 +
Gcaud1020.t1.exon3	Gcaud1020.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_137_length_44725_cov_4.465632 14964..14974 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1020.t1.intron1	Gcaud1020.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_137_length_44725_cov_4.465632 12861..14847 +
Gcaud1020.t1.intron2	Gcaud1020.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_137_length_44725_cov_4.465632 14853..14963 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1020.t1.stop1	Gcaud1020.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_137_length_44725_cov_4.465632 14972..14974 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_137_length_44725_cov_4.465632:11926..14974+
coding sequence from alignment at NODE_137_length_44725_cov_4.465632:11926..14974+

mRNA sequence

>Gcaud1020.t1 ID=Gcaud1020.t1|Name=Gcaud1020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=317bp
MENAPVSPTQSNPLPRQNVDHDPSRASTLELTLITLALFSLMLITLQPSA
RKSSQTHRGQLPATVGLWLIVASLFAYMLTTTALALGWMRLISLDALVTI
VFPLTASLLQVPIDTISDYLLRSLLRRKWEFNEYLRLNQKNFAYVKVGYE
CGQDSHSRVWDSNFDGQCLLNKCKARLFIYRLPQVQYSFSNVRWFMSAMR
HRLKHKLMSVLHQHGDHSCDCSHEQEYEAASHEHTRRQWDGVRIGHTRNA
VELQVTRFGGTFRVWNAVSSGSWLIQKPWMLYLENQDQVLEGLSLITEII
AFGDLVLFLRREKNRT*

spliced messenger RNA

>Gcaud1020.t1 ID=Gcaud1020.t1|Name=Gcaud1020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=951bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:11926..14974+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACGCGCCCGTTTCGCCCACACAATCGAACCCGTTGCCGCGACA
GAATGTGGATCATGATCCATCACGAGCAAGCACGCTGGAGCTCACTCTCA
TTACATTGGCGCTGTTCTCGCTCATGCTCATCACGCTGCAGCCATCCGCC
AGAAAGAGCAGTCAGACACACCGAGGACAGCTGCCGGCTACGGTGGGCTT
GTGGCTCATCGTTGCGTCACTGTTCGCGTACATGCTCACAACAACCGCGC
TGGCGCTCGGCTGGATGCGACTTATCTCGCTAGACGCGCTGGTCACAATC
GTGTTTCCGCTCACCGCGTCGCTGCTTCAGGTGCCCATCGACACCATATC
CGACTATCTGCTACGCTCTTTGCTGCGCCGCAAATGGGAATTCAACGAGT
ATCTGCGCCTGAACCAAAAGAACTTTGCGTACGTCAAGGTGGGCTATGAG
TGCGGGCAGGATTCGCATTCGCGCGTTTGGGACAGTAACTTTGATGGCCA
ATGCTTGCTGAACAAGTGCAAGGCGAGGCTGTTCATCTACCGGCTGCCTC
AGGTTCAGTACTCGTTCTCGAACGTTCGGTGGTTTATGTCCGCGATGAGG
CACCGGCTGAAACACAAGCTAATGTCGGTGCTGCATCAACATGGCGACCA
CTCGTGCGACTGCTCACATGAGCAGGAGTATGAGGCGGCGTCACACGAGC
ACACGCGGCGGCAATGGGACGGCGTTCGCATTGGACACACGCGAAACGCG
GTAGAGCTACAAGTGACTCGCTTTGGCGGCACGTTCCGCGTGTGGAACGC
GGTGTCGTCCGGGTCGTGGCTGATCCAAAAGCCATGGATGCTGTACCTGG
AGAACCAGGACCAGGTGCTGGAGGGGCTGAGTCTCATCACCGAGATCATT
GCCTTCGGCGACCTGGTGCTGTTCCTGCGGAGGGAAAAAAACCGAACGTA
A

protein sequence of Gcaud1020.t1

>Gcaud1020.t1 ID=Gcaud1020.t1|Name=Gcaud1020.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=317bp
MENAPVSPTQSNPLPRQNVDHDPSRASTLELTLITLALFSLMLITLQPSA
RKSSQTHRGQLPATVGLWLIVASLFAYMLTTTALALGWMRLISLDALVTI
VFPLTASLLQVPIDTISDYLLRSLLRRKWEFNEYLRLNQKNFAYVKVGYE
CGQDSHSRVWDSNFDGQCLLNKCKARLFIYRLPQVQYSFSNVRWFMSAMR
HRLKHKLMSVLHQHGDHSCDCSHEQEYEAASHEHTRRQWDGVRIGHTRNA
VELQVTRFGGTFRVWNAVSSGSWLIQKPWMLYLENQDQVLEGLSLITEII
AFGDLVLFLRREKNRT*

mRNA from alignment at NODE_137_length_44725_cov_4.465632:11926..14974+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1020.t1 ID=Gcaud1020.t1|Name=Gcaud1020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3049bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:11926..14974+ (Gracilaria caudata M_176_S67 male)
ATGGAGAACGCGCCCGTTTCGCCCACACAATCGAACCCGTTGCCGCGACA
GAATGTGGATCATGATCCATCACGAGCAAGCACGCTGGAGCTCACTCTCA
TTACATTGGCGCTGTTCTCGCTCATGCTCATCACGCTGCAGCCATCCGCC
AGAAAGAGCAGTCAGACACACCGAGGACAGCTGCCGGCTACGGTGGGCTT
GTGGCTCATCGTTGCGTCACTGTTCGCGTACATGCTCACAACAACCGCGC
TGGCGCTCGGCTGGATGCGACTTATCTCGCTAGACGCGCTGGTCACAATC
GTGTTTCCGCTCACCGCGTCGCTGCTTCAGGTGCCCATCGACACCATATC
CGACTATCTGCTACGCTCTTTGCTGCGCCGCAAATGGGAATTCAACGAGT
ATCTGCGCCTGAACCAAAAGAACTTTGCGTACGTCAAGGTGGGCTATGAG
TGCGGGCAGGATTCGCATTCGCGCGTTTGGGACAGTAACTTTGATGGCCA
ATGCTTGCTGAACAAGTGCAAGGCGAGGCTGTTCATCTACCGGCTGCCTC
AGGTTCAGTACTCGTTCTCGAACGTTCGGTGGTTTATGTCCGCGATGAGG
CACCGGCTGAAACACAAGCTAATGTCGGTGCTGCATCAACATGGCGACCA
CTCGTGCGACTGCTCACATGAGCAGGAGTATGAGGCGGCGTCACACGAGC
ACACGCGGCGGCAATGGGACGGCGTTCGCATTGGACACACGCGAAACGCG
GTAGAGCTACAAGTGACTCGCTTTGGCGGCACGTTCCGCGTGTGGAACGC
GGTGTCGTCCGGGTCGTGGCTGATCCAAAAGCCATGGATGCTGTACCTGG
AGAACCAGGACCAGGTGCTGGAGGGGCTGAGTCTCATCACCGAGATCATT
GCCTTCGGCGACCTGGTGCTGTTCCTGCGGAGGGAGTACGTCATGGACGA
GCTGCGCGCGGGCAAGGGCGGGCTGAAGCGGTGGCACAGCCAGAGCGGGC
AGACGGGGGTGATCCACCGCTCGTTCATCGAGCAGCTGCACCTGGTGGAC
TGGAAGCCGCGCAACTTCCGGCGCTCGGCAAGTGGCGGCTACAACAGCGC
GGAGAACCTCAGCCGGCTGTTCTTCGTGCTGATCCGCAAGTCGCGCCACC
TGAAGGCGCGCATTGCACGGCGGCCGTTCGAGCCGCGCGCGCGCTCGGCG
CATCGGCTGGTGGACGAGTTGCGGCACAGCCGCGCGCGCGATTTCGGCGC
GTTCGAGAGGGAGCTGCATGCGCTGGTGGACGAGTGGCTGGTGTCGTGGG
GCTGCGAGCGCGAGAAGCTGAACCGCGCGCGGCGCGCGACGCTGGGGCGC
CTCCAGTGGCCGTCGCCGGCGCACATGTCCGACTCCACTTGACGTTGAAC
TTTTGACGAGGTCAAAGCTTGCGCGTCGCGTCCTGCCACAGCAGCACCGC
CATGAGCACGCCGCGCTCGGTGCGCAGCAGCGCCACGGCGCCGTGCGTGT
GCAGCTCGTCGAACAGCTGCGCGGTGCCCTTGCCGCCGTCGGCGCGCTGC
GTCAAGAACTTGCTCATCAGCTCGTCCACGGCGATATTCGTGCTCGCGCC
GTCCAGCACCTCCACCTCCAGCACCGCGCGGTGCGGCAGCGCCTCCGGCG
TCTCCGGCCCGCCGCCGCCCTGCGCCACCTGCTCGATGTGGCGGCACGCC
AACCCGTACAGATTGTCACTCCAATACAGCGACTTCAGAGTCATCATGCG
TCGGTTCACGTTGAGGTACACAAGCGCTCTTTTCGCCGCCTTCTTCAGCT
CGTTGCCGCTGGATCCGCGATGCATTGTGATCAACTGCCTCCACAGTTTG
CAACGAAAACGACAACACGCTCTTCACTAACGTGCTTATATACTGCAACA
GCCTCTGAGTTACCCTTGTAGAGGCTCTAACATCGAAGCTATtcaaatct
ccactcccgtgctcaaatctcaaatcttgaatctTGCACCCGTTGTGAGT
CATAATATTAAAATCTATCGCTATTCTAATATGTATTTTCTACCCTTGTA
ATATCTCGTCAAACACTTTCAAATCGTTCAAACCTCCTCAATTCAACCGC
TTACCCTTGTAAAACTCTGAGCGGTTGAATTGAGGAGCTGGAATGATTTG
AAAGTGTTCGACAACGAATCAGCGAAGCTCTGAGCAGAGCTTGTCTTTAT
TCTAACATTAAGGGGCATCTAAGAAGCATCTCCGTTTGCTTCCGACAGAT
AAGGTTTACCATCTACGAAGGGTACCTCCATCGCTTACAGCATTTCAAAA
AGTGAGCTTTTTAAAACATCTCGACAATGTCTAAGCATTCCCGTTCATTC
CTTACCTGATTCCCCACAAAGAGCTGTTGCAAACTCGCAATGCTTCGTGC
CTCTCTTCCTTCCGGTCGTCATAGTATCTTCTCAGAGCACTGCGTGCAGC
ACTAGTCGCTCGCACTGGAGTAGAACCTTTTTTATAGGTGTTGGATATGC
TCAGAACGTGGCTGTTCTAAATACACGCGCTTGTCTGGGTACACAAGCGC
GTGTATTTGGAACATCCACGTCTACCCAAAAACAGCGAATTCACGCTTCA
TCCAGCCTGCCAAAATGATTCGTAGTCATGCTCTTAAACATTCCAGAATT
GCTTTATGCCGTTGCGCGCATTGAGAAGCTCGGAGGTTTTCCTGTTTTGC
TCTTCGGTTTTTGTTAAAGATCGAGTCCGAATCTTCGAGAACAAAGATCA
AATCGGTCCGGAGTGCGGTCAAGGCGTCCAACAAAAGCTAATTGCCAAAA
TCGGAGTCAGTGGTGCTGAGAAAATCGTGCCGGCTTTCCCATTCCATGCG
ATCAGAAGATATGTATTTTCGTTTGCGAGGCAAGCTGTGTCTTGTAAACC
AATCTCTTGTCGATGGTTGAAGAAAAAGTATGTTTTTTAAACAGGCTCTC
GGAAGGATAACAGAGTCAGGATCTCGAGTGATATGCTGACCTTTATGACC
CGACATTTCTTGTCCATGAAACGCTATATACTGAAAAGACCGAACGTAA

Coding sequence (CDS) from alignment at NODE_137_length_44725_cov_4.465632:11926..14974+

>Gcaud1020.t1 ID=Gcaud1020.t1|Name=Gcaud1020.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=951bp|location=Sequence derived from alignment at NODE_137_length_44725_cov_4.465632:11926..14974+ (Gracilaria caudata M_176_S67 male)
ATGGAGAACGCGCCCGTTTCGCCCACACAATCGAACCCGTTGCCGCGACA
GAATGTGGATCATGATCCATCACGAGCAAGCACGCTGGAGCTCACTCTCA
TTACATTGGCGCTGTTCTCGCTCATGCTCATCACGCTGCAGCCATCCGCC
AGAAAGAGCAGTCAGACACACCGAGGACAGCTGCCGGCTACGGTGGGCTT
GTGGCTCATCGTTGCGTCACTGTTCGCGTACATGCTCACAACAACCGCGC
TGGCGCTCGGCTGGATGCGACTTATCTCGCTAGACGCGCTGGTCACAATC
GTGTTTCCGCTCACCGCGTCGCTGCTTCAGGTGCCCATCGACACCATATC
CGACTATCTGCTACGCTCTTTGCTGCGCCGCAAATGGGAATTCAACGAGT
ATCTGCGCCTGAACCAAAAGAACTTTGCGTACGTCAAGGTGGGCTATGAG
TGCGGGCAGGATTCGCATTCGCGCGTTTGGGACAGTAACTTTGATGGCCA
ATGCTTGCTGAACAAGTGCAAGGCGAGGCTGTTCATCTACCGGCTGCCTC
AGGTTCAGTACTCGTTCTCGAACGTTCGGTGGTTTATGTCCGCGATGAGG
CACCGGCTGAAACACAAGCTAATGTCGGTGCTGCATCAACATGGCGACCA
CTCGTGCGACTGCTCACATGAGCAGGAGTATGAGGCGGCGTCACACGAGC
ACACGCGGCGGCAATGGGACGGCGTTCGCATTGGACACACGCGAAACGCG
GTAGAGCTACAAGTGACTCGCTTTGGCGGCACGTTCCGCGTGTGGAACGC
GGTGTCGTCCGGGTCGTGGCTGATCCAAAAGCCATGGATGCTGTACCTGG
AGAACCAGGACCAGGTGCTGGAGGGGCTGAGTCTCATCACCGAGATCATT
GCCTTCGGCGACCTGGTGCTGTTCCTGCGGAGGGAAAAAAACCGAACGTA
A