Gcaud10191.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10191.t1
Unique NameGcaud10191.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3861_length_2852_cov_3.472293contigNODE_3861_length_2852_cov_3.472293:420..1037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10191Gcaud10191Gracilaria caudata M_176_S67 malegeneNODE_3861_length_2852_cov_3.472293 420..1037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10191.t1Gcaud10191.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3861_length_2852_cov_3.472293 420..1037 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10191.t1.stop1Gcaud10191.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3861_length_2852_cov_3.472293 420..422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10191.t1.CDS1Gcaud10191.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3861_length_2852_cov_3.472293 420..483 -
Gcaud10191.t1.CDS2Gcaud10191.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_3861_length_2852_cov_3.472293 611..874 -
Gcaud10191.t1.CDS3Gcaud10191.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_3861_length_2852_cov_3.472293 961..1037 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10191.t1.exon1Gcaud10191.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3861_length_2852_cov_3.472293 420..483 -
Gcaud10191.t1.exon2Gcaud10191.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_3861_length_2852_cov_3.472293 611..874 -
Gcaud10191.t1.exon3Gcaud10191.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_3861_length_2852_cov_3.472293 961..1037 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10191.t1.intron1Gcaud10191.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_3861_length_2852_cov_3.472293 484..610 -
Gcaud10191.t1.intron2Gcaud10191.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_3861_length_2852_cov_3.472293 875..960 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10191.t1.start1Gcaud10191.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3861_length_2852_cov_3.472293 1035..1037 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10191.t1 ID=Gcaud10191.t1|Name=Gcaud10191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=135bp
MQPPALPLPTDTEQLCALCAKPHDGRFGQGRFCGLACSKRVGALKRWGTR
RDDGRGVRKKRRAHAAGDACDVAVRRAHAPALEALTGERVSVKVRGVWHV
GVLQRYDWRRDRHWLRSSARGQWLSLRERALRFV*
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spliced messenger RNA

>Gcaud10191.t1 ID=Gcaud10191.t1|Name=Gcaud10191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=405bp|location=Sequence derived from alignment at NODE_3861_length_2852_cov_3.472293:420..1037- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCGCCGGCGCTGCCGCTGCCGACGGACACGGAGCAGCTGTGCGC
GCTGTGCGCGAAGCCGCACGACGGACGCTTCGGACAGGGCCGCTTCTGCG
GGCTGGCGTGCAGCAAGCGCGTGGGCGCGCTGAAGCGTTGGGGCACGCGC
CGCGATGACGGCCGCGGCGTGCGCAAGAAGCGACGCGCGCACGCAGCGGG
CGACGCGTGTGATGTGGCTGTACGTCGCGCGCACGCGCCGGCGCTCGAGG
CGCTAACGGGCGAGCGCGTGTCGGTGAAGGTGCGCGGCGTGTGGCACGTG
GGCGTGCTCCAGCGCTACGACTGGCGGCGCGATCGCCACTGGTTGCGCAG
CTCGGCGCGCGGGCAGTGGCTGAGCTTGCGCGAACGTGCACTGCGCTTTG
TGTAG
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protein sequence of Gcaud10191.t1

>Gcaud10191.t1 ID=Gcaud10191.t1|Name=Gcaud10191.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=135bp
MQPPALPLPTDTEQLCALCAKPHDGRFGQGRFCGLACSKRVGALKRWGTR
RDDGRGVRKKRRAHAAGDACDVAVRRAHAPALEALTGERVSVKVRGVWHV
GVLQRYDWRRDRHWLRSSARGQWLSLRERALRFV*
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mRNA from alignment at NODE_3861_length_2852_cov_3.472293:420..1037-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10191.t1 ID=Gcaud10191.t1|Name=Gcaud10191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=618bp|location=Sequence derived from alignment at NODE_3861_length_2852_cov_3.472293:420..1037- (Gracilaria caudata M_176_S67 male)
ATGCAACCGCCGGCGCTGCCGCTGCCGACGGACACGGAGCAGCTGTGCGC
GCTGTGCGCGAAGCCGCACGACGGACGGTAGGTTGAGCCGGAAGCGCGCA
AGGGCCATGCGGAGAAGAGGACGCTGACCACGTGGCGCGCCACGGCGTTG
CTCGCTTGCTCAGCTTCGGACAGGGCCGCTTCTGCGGGCTGGCGTGCAGC
AAGCGCGTGGGCGCGCTGAAGCGTTGGGGCACGCGCCGCGATGACGGCCG
CGGCGTGCGCAAGAAGCGACGCGCGCACGCAGCGGGCGACGCGTGTGATG
TGGCTGTACGTCGCGCGCACGCGCCGGCGCTCGAGGCGCTAACGGGCGAG
CGCGTGTCGGTGAAGGTGCGCGGCGTGTGGCACGTGGGCGTGCTCCAGCG
CTACGACTGGCGGCGCGATCGCCACTGGTGCGTTTTTTGGCTGCGCCGTT
TTTTGCTTGTGCGAGCGCGTGCGCGAGCACAGAAGCGATCGGCGCGCGCG
CTGACGTGGGTGTGTGTGTGTGTGTGTGTGTTTGTGTGAGCGCGTTCTCC
GCAGGTTGCGCAGCTCGGCGCGCGGGCAGTGGCTGAGCTTGCGCGAACGT
GCACTGCGCTTTGTGTAG
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Coding sequence (CDS) from alignment at NODE_3861_length_2852_cov_3.472293:420..1037-

>Gcaud10191.t1 ID=Gcaud10191.t1|Name=Gcaud10191.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=405bp|location=Sequence derived from alignment at NODE_3861_length_2852_cov_3.472293:420..1037- (Gracilaria caudata M_176_S67 male)
ATGCAACCGCCGGCGCTGCCGCTGCCGACGGACACGGAGCAGCTGTGCGC
GCTGTGCGCGAAGCCGCACGACGGACGCTTCGGACAGGGCCGCTTCTGCG
GGCTGGCGTGCAGCAAGCGCGTGGGCGCGCTGAAGCGTTGGGGCACGCGC
CGCGATGACGGCCGCGGCGTGCGCAAGAAGCGACGCGCGCACGCAGCGGG
CGACGCGTGTGATGTGGCTGTACGTCGCGCGCACGCGCCGGCGCTCGAGG
CGCTAACGGGCGAGCGCGTGTCGGTGAAGGTGCGCGGCGTGTGGCACGTG
GGCGTGCTCCAGCGCTACGACTGGCGGCGCGATCGCCACTGGTTGCGCAG
CTCGGCGCGCGGGCAGTGGCTGAGCTTGCGCGAACGTGCACTGCGCTTTG
TGTAG
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