Gcaud10189.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10189.t1
Unique NameGcaud10189.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length41
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3352_length_3599_cov_12.318700contigNODE_3352_length_3599_cov_12.318700:201..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10189Gcaud10189Gracilaria caudata M_176_S67 malegeneNODE_3352_length_3599_cov_12.318700 201..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10189.t1Gcaud10189.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3352_length_3599_cov_12.318700 201..443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10189.t1.CDS1Gcaud10189.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3352_length_3599_cov_12.318700 201..316 -
Gcaud10189.t1.CDS2Gcaud10189.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_3352_length_3599_cov_12.318700 437..443 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10189.t1.exon1Gcaud10189.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3352_length_3599_cov_12.318700 201..316 -
Gcaud10189.t1.exon2Gcaud10189.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_3352_length_3599_cov_12.318700 437..443 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10189.t1.intron1Gcaud10189.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_3352_length_3599_cov_12.318700 317..436 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10189.t1.start1Gcaud10189.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3352_length_3599_cov_12.318700 441..443 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10189.t1 ID=Gcaud10189.t1|Name=Gcaud10189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=41bp
LLVLLRILTIGTAGFFSFEVDQIFYGQMRALHVMKKALVLA
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spliced messenger RNA

>Gcaud10189.t1 ID=Gcaud10189.t1|Name=Gcaud10189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=123bp|location=Sequence derived from alignment at NODE_3352_length_3599_cov_12.318700:201..443- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTGTCCTCCTCAGAATCCTCACTATCGGTACCGCTGGTTTCTTCTC
CTTCGAGGTTGATCAAATCTTCTATGGACAAATGCGCGCGTTGCATGTTA
TGAAGAAAGCGTTAGTGCTGGCG
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protein sequence of Gcaud10189.t1

>Gcaud10189.t1 ID=Gcaud10189.t1|Name=Gcaud10189.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=41bp
LLVLLRILTIGTAGFFSFEVDQIFYGQMRALHVMKKALVLA
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mRNA from alignment at NODE_3352_length_3599_cov_12.318700:201..443-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10189.t1 ID=Gcaud10189.t1|Name=Gcaud10189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp|location=Sequence derived from alignment at NODE_3352_length_3599_cov_12.318700:201..443- (Gracilaria caudata M_176_S67 male)
CTGCTTGGTAAAGTTCCAAGTACCACTGCGATTGCCTCCTCTCTTTGTTG
GTTTCTTAGTTTCTAATTTCTTCTTTCTACTCTGGGTCTTTACGGTATCG
TCCTCGTCTTCGGTTACATCTTGACAGTCCTCCTCAGAATCCTCACTATC
GGTACCGCTGGTTTCTTCTCCTTCGAGGTTGATCAAATCTTCTATGGACA
AATGCGCGCGTTGCATGTTATGAAGAAAGCGTTAGTGCTGGCG
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Coding sequence (CDS) from alignment at NODE_3352_length_3599_cov_12.318700:201..443-

>Gcaud10189.t1 ID=Gcaud10189.t1|Name=Gcaud10189.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=123bp|location=Sequence derived from alignment at NODE_3352_length_3599_cov_12.318700:201..443- (Gracilaria caudata M_176_S67 male)
CTGCTTGTCCTCCTCAGAATCCTCACTATCGGTACCGCTGGTTTCTTCTC
CTTCGAGGTTGATCAAATCTTCTATGGACAAATGCGCGCGTTGCATGTTA
TGAAGAAAGCGTTAGTGCTGGCG
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